RNA id: TU457662


Basic Information

Item Value
RNA id TU457662
length 1809
lncRNA type inter_gene
GC content 0.36
exon number 2
gene id LOC117596226
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13351048 ~ 13363588 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGTTCTGACTTATTATAACATACTCTCCATGTCGTATTTCCACTCTTGCTTTATATTCCTCTGTGTGAAGTACAGACTCTCCAGTCCCCCAGACCTCAGATGTTCCCAGCATTTTAGAACTTTTCAGGACAGCACATCCTATCCTTTCAGCATTTTCCTTCTTTCAGGCCATGCCAGCTCCACATGTGGTGAAAATATCTCTCTGCTGCCTGCAAGAGCAATGTTCCCtgcttgttttcattttatggtTGTATACACAATGCTGCCAAAGCCACAGTGAGGAAAAGAGTGGGGAAGAGAAGGGGAGAGATCAATCAGGAATGAAGAAGAGATAGACAAACAAGCCCACTCATGGTATGCAAGAGGAGGACGTGATGCATCAGAGATCTTGCAACGATTAACTGTAAACTGTGAGTTTCCCGTTTGGATGCTTGTAAACTCCATAACTGTAATAAAAGTGATATGTTCCAGTAAAGTAGACTCCAGTCTCAGCAATACTGTAGGACCTGCATTTCTCAGTGAGTGACCTTCTTATGCTGAATGAAAAGCCTGATTCATATAAAGAgccaaagcaaaaacaaacctgTCTGTGGTGGCATAGAGAAAGGAAGTTAATCCTCTGGGCAAAGAAACAGAACTTTCATTAAGTTTGTCCTTTATGTCTTATGACTTGGCAAAAGCATGATATACATTACAAAATGCGACACCACTTCCTCATGCTTGTAGCAGGAATGCACCAATCCccctttttccatttcattacaAGACCCGGCTGATATCTGACACAGACATCCTTTCGGGAGCAAAGCTGACTCTCTGCAATCTTCTAATGTAAAACCTAAGAGGAGAGTTTTAAGACAACGTGTCCCCGTGTTCATGTGCAAGATCTTTCTTGCTTCAGTCAATATAAAAACCTGATCAGATGAGAAGTCAAACCTGATCTGATTTGACAACAATCAAGGATTTgttgatatatattatatactatggTGAAAAAATTTAGGACTGTCTTATATGGTACCATATTGTAACCAATATTAAAGGCAGcaaggaaaaatataatattccacatacactttttttaaaacatatttacagattCGCAGCTTTATGGCATCAAACACTGCTTACTTTCCAACACTGAATCACTAGTTGATATCCTTCTGAATATCAGCCCACTTTCCAAAAATTATTTTAGCATGATATACTCATGCCAACTGATATATTGATTAGTTCacagaattttaaatttttaacaaaactgaaGCAACAATGGGAAAGCAAACTTAACTCACAATTTTCAGAGGAAATATGGCAAGGTATTATAAATAAGATTCACGCATCCTCAATTAGTTTACGAGATACATTGATTCAATTTAAAGTAGTCCTTCTGCCTTCActggaaaaaagcaaaattagtaaaaaattTTCCTTGTATGATAGGTGTGGAGTTGGAATAATCGTTAATCATATACATGCATGTTTCTTATCCAAAACCTGTTAACTACTGgcaattaatatttaattttctctcaGGAGGTCTGCATATATCCATTAATCCTTCCCTATTCTAGGGATATTTGGTTTAACTACACCAGAACTCTTAGATTACTAagctaaaaatatgaatttaaactgaattttttttgctgtttgaggtttttcttctttcttcctcgTTCTCATTTAATACTATACCTGGCTTTGTGAGGCCAAAATTATgttatagaatagaatattttattctattactcttactttagttcattttttttactcctctCTCAGAAATCCTTTCATCTGGTTTT

Function

GO:

id name namespace
GO:0050878 regulation of body fluid levels biological_process
GO:0051180 vitamin transport biological_process
GO:0001775 cell activation biological_process
GO:0030168 platelet activation biological_process
GO:0009611 response to wounding biological_process
GO:0007596 blood coagulation biological_process
GO:0007599 hemostasis biological_process
GO:0050817 coagulation biological_process
GO:0042060 wound healing biological_process
GO:0005520 insulin-like growth factor binding molecular_function

KEGG:

id description
ko04610 Complement and coagulation cascades

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU457585 lncRNA upstream 73285 13286963 ~ 13288280 (+) True G385998
TU457602 lncRNA upstream 147587 13213519 ~ 13213978 (+) True G386015
TU457591 lncRNA upstream 174636 13186706 ~ 13186929 (+) True G386004
TU457472 lncRNA upstream 209358 13151992 ~ 13152207 (+) True G385892
TU457385 lncRNA upstream 365349 12995045 ~ 12996216 (+) True G385823
TU457730 lncRNA downstream 113826 13477414 ~ 13477778 (+) True G386136
TU457741 lncRNA downstream 143810 13507398 ~ 13508005 (+) True G386147
TU457843 lncRNA downstream 291420 13655008 ~ 13658088 (+) True G386246
TU457869 lncRNA downstream 323675 13687263 ~ 13779139 (+) True G386265
TU457894 lncRNA downstream 364599 13728187 ~ 13737685 (+) True G386284
XM_026922454.2 mRNA upstream 76534 13273885 ~ 13285031 (+) True adora2b
XM_026921946.2 mRNA upstream 88903 13201804 ~ 13272662 (+) True specc1
XM_034300956.1 mRNA upstream 341426 12996258 ~ 13020139 (+) True ttll11
XM_034300429.1 mRNA upstream 560830 12790901 ~ 12800735 (+) True zgc:63972
XM_026921567.2 mRNA downstream 153882 13517470 ~ 13522726 (+) True c27h11orf54
XM_034300709.1 mRNA downstream 159429 13523017 ~ 13529674 (+) False LOC113531575
XM_034300710.1 mRNA downstream 160026 13523614 ~ 13631816 (+) False LOC113531575
XM_026922381.2 mRNA downstream 160027 13523615 ~ 13529673 (+) True LOC113531575
XM_026922383.2 mRNA downstream 160041 13523629 ~ 13529674 (+) False LOC113531575
XR_003403209.2 other upstream 2050712 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 2981900 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 3593529 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 3990035 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 3990428 9371060 ~ 9371137 (+) True LOC113531672
TU457909 other downstream 458200 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 462262 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 1997770 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 2671235 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 2784772 16148360 ~ 16148432 (+) True trnam-cau_49

Expression Profile