RNA id: XR_004577394.1


Basic Information

Item Value
RNA id XR_004577394.1
length 421
lncRNA type inter_gene
GC content 0.44
exon number 3
gene id LOC117596226
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13351048 ~ 13363588 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAGGattgagagagtgaaagaacaGGAGAAATAACAGCAGGATAAAAGCTGGAGGAAGGGCCATGCCAGCTCCACATGTGGTGAAAATATCTCTCTGCTGCCTGCAAGAGCAATGTTCCCtgcttgttttcattttatggtTGTATACACAATGCTGCCAAAGCCACAGTGAGGAAAAGAGTGGGGAAGAGAAGGGGAGAGATCAATCAGGAATGAAGAAGAGATAGACAAACAAGCCCACTCATGGTATGCAAGAGGAGGACGTGATGCATCAGAGATCTTGCAACGATTAACTGTAAACTGTGAGTTTCCCGTTTGGATGCTTGTAAACTCCATAACTGTAATAAAAGTGATATGTTCCAGTAAAGTAGACTCCAGTCTCAGCAATACTGTAGGACCTGCATTTCTCAGTGAGTGACC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU457585 lncRNA upstream 62796 13286963 ~ 13288280 (+) True G385998
TU457602 lncRNA upstream 137098 13213519 ~ 13213978 (+) True G386015
TU457591 lncRNA upstream 164147 13186706 ~ 13186929 (+) True G386004
TU457472 lncRNA upstream 198869 13151992 ~ 13152207 (+) True G385892
TU457385 lncRNA upstream 354860 12995045 ~ 12996216 (+) True G385823
TU457730 lncRNA downstream 115106 13477414 ~ 13477778 (+) True G386136
TU457741 lncRNA downstream 145090 13507398 ~ 13508005 (+) True G386147
TU457843 lncRNA downstream 292700 13655008 ~ 13658088 (+) True G386246
TU457869 lncRNA downstream 324955 13687263 ~ 13779139 (+) True G386265
TU457894 lncRNA downstream 365879 13728187 ~ 13737685 (+) True G386284
XM_026922454.2 mRNA upstream 66045 13273885 ~ 13285031 (+) True adora2b
XM_026921946.2 mRNA upstream 78414 13201804 ~ 13272662 (+) True specc1
XM_034300956.1 mRNA upstream 330937 12996258 ~ 13020139 (+) True ttll11
XM_034300429.1 mRNA upstream 550341 12790901 ~ 12800735 (+) True zgc:63972
XM_026921567.2 mRNA downstream 155162 13517470 ~ 13522726 (+) True c27h11orf54
XM_034300709.1 mRNA downstream 160709 13523017 ~ 13529674 (+) False LOC113531575
XM_034300710.1 mRNA downstream 161306 13523614 ~ 13631816 (+) False LOC113531575
XM_026922381.2 mRNA downstream 161307 13523615 ~ 13529673 (+) True LOC113531575
XM_026922383.2 mRNA downstream 161321 13523629 ~ 13529674 (+) False LOC113531575
XR_003403209.2 other upstream 2040223 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 2971411 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 3583040 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 3979546 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 3979939 9371060 ~ 9371137 (+) True LOC113531672
TU457909 other downstream 459480 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 463542 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 1999050 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 2672515 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 2786052 16148360 ~ 16148432 (+) True trnam-cau_49

Expression Profile