RNA id: TU457977


Basic Information

Item Value
RNA id TU457977
length 1569
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G386350
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13891003 ~ 13892625 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cgttttcatttctttaatggTCAGAGAAGAAATAGGTCacccttttattttttaacactgaTAAATACATGGTTTCTGCTAATCAGAtctaacaggaaaaaaaaaaaaaaaaaaaaaaaaaaagcttgtgggaaaaaaaacatccattcgTGCGTTAAGACCAACAAATGTGACCCTTTTAAAAAGAGATTCCTTCCAAGGAGCAATTATTCTTCCCCACTTTTTTCACATCAGTAAGAACAGTAAGATCTTTAGGAAAGACCTTAAATAAAGTGCAGACTGGGGTGAGAGAGTTGAAGGCCTAAACTAACGCCAGTGTCCTTAACACTTAGACCCCCAACTAACATTCAATGAAGGACTGTAATTCCTCACGTCTTGTCGTTTGAAAAATGCTGAACGGTAAAAACTCGATAAAGAAACTAAAGTATTGTGTGCCATTTCTTTCGCTTCCTTTAGAAGAAGACAGCTTCACACGTGAAAAGGGggaagaaaatgtcaaaaaatagTGTACAGTAAATTGCACAATCCATTCTCTAGTTTTTcagttgaaattaaaaatgaagaagTGATATAGTGACTACATTTTTCCCCTCTATTCAGAAAAGCACAAGAGCCAGGTCAGCCGTGCTGTGTTTGATTACAATCTGATAAATCTCCGCCCCGGACTGACGCTGACTCTGAGCTGGAGCACAGAAACCCATTGATTGTAGTTTGGatacaagaaaaacaacaacttatTCATAATTCAGTGACTTGGCATTGAAAACGAGAACACAGGATTTAGGTGAAACGGGGGCAAATGAGAAAACCGGTTTcacaaacagatgaaaaaaagctttttttttttcccctcataaaTTGAACTTGTGATCAATCCATATCACTAAAACAAATTGCacgcaaaaaaacaaaaacacactcgaGGAGTCAGTTTAGGCCTAAAGTGACTTGGCACAGTAAGAGAAGAGGGATGGGCAATGAAATAAACGTTTGTACAAAAACGTTTGTGGCGTACATTCTTGGCCTTCTGTTAAAGAGGACCGGTTGCTAATACACTGTGGTTATTTGCAATGAATCAGGAATCGTTTTGGTGAGgaggagtggaaaaaaaaaatattcccagCCCACGTCTCAGTAGGCCTTGTTGTCATGGTGAAATGGGGTCTggagaaagtttaaaaaaaaaaaaaaaaaaaaaaaaaaggggttatAAGGAAGAGggggagaaaggagaaaaatctAACACTGCAGTCACACTAGCTGAGGGTCCCTGTAGAAAAGGATGCACTCTGGAGCAGGAGGCTGAGGGACAGGTATTGGCACAATCAGTCTAATGAAAGTGGGAGAGTGCAACTAAAGCAACCCagctagctctctctctctctctctctctctctctctcacgcacaaacacacactcacacacacctttcattCTCACAAAGCTCTTGGCACTTTTGAAAATGATAATCTAGCAGGGACTCGGAGAGGCTCGTGTCCAATCTCACTGTCCTGTGCTCTCATTGGTCCTCAAGGCTCCGATCACACTCTGGATGTTCTCCTCTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU457975 lncRNA upstream 14810 13875938 ~ 13876193 (+) True G386348
TU457960 lncRNA upstream 35909 13854858 ~ 13855094 (+) True G386342
TU457948 lncRNA upstream 48357 13842343 ~ 13842646 (+) True G386330
TU457869 lncRNA upstream 111864 13687263 ~ 13779139 (+) True G386265
TU457894 lncRNA upstream 153318 13728187 ~ 13737685 (+) True G386284
XR_004577400.1 lncRNA downstream 9359 13901984 ~ 13903993 (+) True LOC117596231
TU457998 lncRNA downstream 31195 13923820 ~ 13924243 (+) True G386359
TU458000 lncRNA downstream 33763 13926388 ~ 13926592 (+) True G386361
TU458013 lncRNA downstream 51084 13943709 ~ 13943939 (+) True G386374
TU458014 lncRNA downstream 51643 13944268 ~ 13944481 (+) True G386375
XM_026922387.2 mRNA upstream 1736 13876835 ~ 13889267 (+) True rcc1l
XM_034300462.1 mRNA upstream 16094 13870651 ~ 13874909 (+) False ncf1
XM_034300461.1 mRNA upstream 16096 13870651 ~ 13874907 (+) True ncf1
XM_026922443.2 mRNA upstream 80449 13806887 ~ 13810554 (+) True pex12
XM_026922444.2 mRNA upstream 80449 13807507 ~ 13810554 (+) False pex12
XM_026921694.2 mRNA downstream 194017 14086642 ~ 14093355 (+) True rad51d
XM_026921486.2 mRNA downstream 855813 14748438 ~ 14756063 (+) True nup88
XM_026921634.2 mRNA downstream 899508 14792133 ~ 14795940 (+) True mis12
XM_026921630.2 mRNA downstream 918477 14811102 ~ 14855941 (+) False mcama
XM_026921632.2 mRNA downstream 918479 14811104 ~ 14855941 (+) True mcama
TU457943 other upstream 62855 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 66948 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 2580150 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 3511338 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 4122967 9765740 ~ 9768036 (+) True G384178
XR_004577401.1 other downstream 1468733 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 2142198 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 2255735 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 2653516 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 2763044 16655669 ~ 16657113 (+) True LOC113531241

Expression Profile