RNA id: TU458097


Basic Information

Item Value
RNA id TU458097
length 2782
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G386458
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14073248 ~ 14076060 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tagcGAAGCATGTGCCTATAGTCATTTACAAACAGCACAGAAACAAAGGGATTGTCTTCTAAGGGACTGGTCAGCAGGTAGGACATTTACAATCATGCATTAAGACATGTGAAAGGATTGCAAATGGCATCACACACTTCTGAATAGCAACTTATGTTAAGGGCATAAAGATAGAATTGAAACTAGAGAattgtgtaatgaaataattttcacTCAAAGAAAACAAGGGGACAGATCAAtatgatccaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaggcaacattCAGAAAATCCATTACACATTTCAAGAAAATATccaacaaaataattttatcctccactttttttttttttaaaacagctttTCTAAACTACTCTACTTTTTTTTGGATTCGCATTAAAATTGATTCGAATTAAAAACTCAGgtttccatcatcatcatcatcatcatcatcataaaactgagaaatgtatttatataagcAACAAGTAATAAAAGATGCTTTAAATATGAAGTATTGCTTTTCTGAAACACATCCTTTGTATAGCATAATTAATCTTAACTAAACTGGTGAACTGATGTTTGGGGTTTAACACTAAATTATGGCTAAAGATGAAATCATTTGACctgctatttatttataagtgaAATGTTGCTCAGTTCAGTTGTGGAGTTTGTCTGGTGTTTTGAGTGAGGCGTGATATTTACATGGATGATTAGTGCAAAGGCACGTTAGTGGTTGGACAGCGTGTGTTGGGGAACGGCTAGCGAAAGAGACAAGATAAAAATGGTTGCTTGTGTCGGATGAGCCTAATATATTATTAAAAAAAAGCAACGGCAAAATCAGAAACACGTCAACATTAACTCAAAATGGTTCCTCGTTCTTCACatgcttgttgctgattggacaCAGCATATGCGTATGACTACTtctattaagaagaaaataaaagaattgcaCTTTTTCAAACTGTTATCCAGTTactctagcaaaaaaaaaaattaatttgaaattaCTTATGTTACAATACTAAAGAATAATTCTTTCTTCTGAAAAACGTGGCTTCCTTTAGGTGAGATTTTCAGCATACTCATATAATGCCATGCAAAGATaacagcatatttaaaaaaaagcatatgaaTGCCTTTgataaaattaaacatgaataaacGCATCAAGTAAGATTCATTTAGGTTCATATTTTCCTCTTACTCTTTCCGGGTTTATCAGACCGATGAGCCAATTATTGTTGATATGTTTCTGATTTGTTGTGTTATTGGCTTTGCTGTTGTGATTTCTGATTTGCTgctgcattgttttttgtttttttttttgttaatgcatTTGCACTTACAGGCCACCACCCTGGTGCTTTCTAAAGACGGGAAACATCTGCGAAAGCAAAAGGTCGGCATTAATCCTGACACATAAGGGAAATGAAGGGACATTAAGGCAGTCTACTATGAGAgcaggtgaagaaaaaaaaaaaaaaatgaaagagcaAGGCAAAAGCAAAAGCTGCTGAAACCATCATACTCGTAAAAGTTCCTTTCTCTTATTCTAACCATCTACAACAGACGATTAAATAATTGCACTGTCGAATGTGAACACTAACATGGACGATTTGTTACAGAATCATATCGCACTTCATATGTGGCATTAGCCAACAGGCTTAAAGACTAAAGACAAATGATATGTAATGCAACACAGACAAGAGGAATGAATTTCTGAGTAACGTATTAAAAATTTTGCAGGAACCTCCCCAAGCTATTTCATGTCCAaataaaatgaagcaataaTGTTTTGAGGTAATAGATTACACATGATAAAActaagtcctttttttttttacatcacattttaaataaggTTGTAATTGTATGTGTGAATTTCATGAATGCTGTACATTCTGTCATTCAGTCTACCTGTACGTGAACCAACGTGAAAATCTGAGAGGTGATGAATCAGTCCCAATCGGAGAATCCATCGACGACGGCTCTTTCCGTTTCAGTTGTGACTGGAGCATCGTCCAGCCAAATCCAGGCCTTggagtctttttttcttttattaaatgaCTCTCACACCTACTGGCATCTAGgtagcacacatacacactacatgtcctacaaaaaagcaaaaatctgtgtcaaaaaaaaaaaaatctagattaTAAATCATCGCCTAGCAGTCTGCTGGCTTTCCAGGTCATTCTCTAGACGCCAGTCCATTTGAAATCTGATAGTGCCACTACACGAGCttcaaaaaagcaaaacaaaaaagagcaacaacaagaaaaaaaaagcaaacacagtCAGGAACGCTATGGACAATTATCATAGGTGATATGAATAAGAAAGTGGGATATTCTGTGTGCAACTGACAAAAACggtgctggaaaaaaaataaaaaatcaaacgTGATGTTTGAATGATAATACACATACATTCTGTCACTCGTTCCGtctcttttcttcacatattttGTGGCACATGGGGAAGGGGGAGTTTAGGCAAAGTGCTTCCGTACTGAATATAAGGGTCCTACAAGCATTTACACAGTAGATACAGGCACTTGAAAGTCTTTGGTTGGAGTGACCCAACATTGCAGAGATTCGCATCACAGTTTGTTGTCACCTTCCTCCTGGGTTCAATAGGTGACGAGTTTTTCACTTTCCCCTCCTCCACGTCCGATATGGTTTATTCCAGATTCTCCAGTCTGACGCTGAACGAGTTCAGTCCATATTTTCCATATTATGATCATTCTTATCCCTCTGACAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458124 lncRNA upstream 14745 14058228 ~ 14058503 (+) True G386476
TU458110 lncRNA upstream 35326 14037683 ~ 14037922 (+) True G386462
TU458096 lncRNA upstream 40007 14032835 ~ 14033241 (+) True G386457
TU458055 lncRNA upstream 83932 13988556 ~ 13989316 (+) True G386416
TU458025 lncRNA upstream 111539 13961413 ~ 13961709 (+) True G386386
TU458138 lncRNA downstream 54111 14130171 ~ 14130627 (+) True G386490
XR_004577415.1 lncRNA downstream 76084 14152144 ~ 14184051 (+) False LOC117596237
XR_004577416.1 lncRNA downstream 76084 14152144 ~ 14154142 (+) True LOC117596237
TU458144 lncRNA downstream 93998 14170058 ~ 14175425 (+) True G386495
TU458889 lncRNA downstream 632796 14708856 ~ 14716055 (+) True G387160
XM_026922387.2 mRNA upstream 183981 13876835 ~ 13889267 (+) True rcc1l
XM_034300462.1 mRNA upstream 198339 13870651 ~ 13874909 (+) False ncf1
XM_034300461.1 mRNA upstream 198341 13870651 ~ 13874907 (+) True ncf1
XM_026922443.2 mRNA upstream 262694 13806887 ~ 13810554 (+) True pex12
XM_026921694.2 mRNA downstream 10582 14086642 ~ 14093355 (+) True rad51d
XM_026921486.2 mRNA downstream 672378 14748438 ~ 14756063 (+) True nup88
XM_026921634.2 mRNA downstream 716073 14792133 ~ 14795940 (+) True mis12
XM_026921630.2 mRNA downstream 735042 14811102 ~ 14855941 (+) False mcama
XM_026921632.2 mRNA downstream 735044 14811104 ~ 14855941 (+) True mcama
TU457943 other upstream 245100 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 249193 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 2762395 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 3693583 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 4305212 9765740 ~ 9768036 (+) True G384178
XR_004577401.1 other downstream 1285298 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 1958763 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 2072300 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 2470081 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 2579609 16655669 ~ 16657113 (+) True LOC113531241

Expression Profile