RNA id: TU458927


Basic Information

Item Value
RNA id TU458927
length 1309
lncRNA type read_through
GC content 0.39
exon number 2
gene id G387197
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14856268 ~ 14868701 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTAtgcagcactgacactggagcaagattatattgtaaatatcCCTGTGTACgttgttaatatagaaatgataacttaGCAGAAagagcatataaaaaaaaaacctgtgatttgctttgcagctggAAGTACTGTCACAACTGCTGAACGCCTAAAGATAGAGAATATAGGACATACATTAATTATATCAACATTACCAACAAAGGATTTTtgctatttgtatctgtttaggcAGGCTATTTTACTTAAATATGGCAAACAGACTTCAGTGCCCATATGGTCTGCCCCTATGAGGTCTGTAAGACAGCTCAGGCTTAATTTAAGCTCCATTTTCATGGGTGGAGTGtgaagtTGGATGTgatttatgtgtttttctttctggagCTCTTCTGTTGCTGATTGGATTTTTAAGCGTCCCAAAGAGCTCTCAGGCCTGTAAAAACTAGTGCTGTGGAGTAATCTCCAGCGGGCAGGCCGCTCATGTCAGCCAAACATGAACCAAATGGCTCTTATTTATCTCTCGTTTTTCCAGCACATGTTCACTCATCAACAGACTTTTAACAGACTACTGTTTGATAGAGCAGAGGATGGTGGAGCGAATCCAATCTGCCTGCCAAGCTGCTTAGATCTGGAAGAGGGATTTTTTTGCAACTCATATGGAGAATAAATCCTGACAGCTTGGGAAATTATGATATTTACAATTCTGTTGTGTAATACTGAGATTGTGGGGCTGCGGctatttgtcttgtttttgacTGTCTAACATgtattaaatcacattttcaaatGTCAGAACTTtggaatacaaaaaaaatctatctttGAATAAGTATTTACCAGTGGTAGAATCAAGAAATATATCCTTAGCTATAATTATAACTAAACGTAAGATCGACAGCAGTGTCTCCCTGGCAACGCAAACAACTCCTCTGCAGTGCTAGTGCTAGAAAAGCGTGCAGGAATGACAGTGGATCTTCCACagcacttttgtttttacacaagtCATGAGTCATGAACgttgtgtggtgtgttggtgtattttgTGCATACTTCTAGGAGCATGGTCCTcacagaaaatggaaaaatatggtAAGATTGTGGTTTATGTGTGCTGCACTGCTACTTCACCCTTCCAACTGGTTTGAAAAGCTACACTGATCAACCGAGCATGgcattgtaaaatgtaaaagcagCATTTGGTTTCATAATTATAGATTAAAGTGCACTTTCCTCCATTGTCCTCTTATTTAAGTGACTACTGTCATGCAGCAGTGAGCATCATTTAACCATTTAGGGTTGTGAGTTTTGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458889 lncRNA upstream 140213 14708856 ~ 14716055 (+) True G387160
XR_004577415.1 lncRNA upstream 672217 14152144 ~ 14184051 (+) False LOC117596237
TU458144 lncRNA upstream 680843 14170058 ~ 14175425 (+) True G386495
XR_004577416.1 lncRNA upstream 702126 14152144 ~ 14154142 (+) True LOC117596237
TU458138 lncRNA upstream 725641 14130171 ~ 14130627 (+) True G386490
TU458941 lncRNA downstream 66003 14934704 ~ 14936042 (+) True G387208
TU459148 lncRNA downstream 294683 15163384 ~ 15233645 (+) False c27h11orf88
TU459154 lncRNA downstream 313612 15182313 ~ 15204882 (+) False LOC113531625
TU459156 lncRNA downstream 313612 15182313 ~ 15204587 (+) False LOC113531625
TU459153 lncRNA downstream 334762 15203463 ~ 15204587 (+) True LOC113531625
XM_026921630.2 mRNA upstream 327 14811102 ~ 14855941 (+) False mcama
XM_026921632.2 mRNA upstream 327 14811104 ~ 14855941 (+) True mcama
XM_026921631.2 mRNA upstream 327 14811108 ~ 14855941 (+) False mcama
XM_026921633.2 mRNA upstream 327 14811472 ~ 14855941 (+) False mcama
XM_026921634.2 mRNA upstream 60328 14792133 ~ 14795940 (+) True mis12
XM_026922535.2 mRNA downstream 228367 15097068 ~ 15138075 (+) True drd2b
XM_026921448.2 mRNA downstream 357644 15226345 ~ 15233692 (+) True c27h11orf88
XM_026921447.2 mRNA downstream 366218 15234919 ~ 15242995 (+) True layna
XM_034300431.1 mRNA downstream 366218 15234919 ~ 15242995 (+) False layna
XM_026922534.2 mRNA downstream 376304 15245005 ~ 15261736 (+) True sik2a
TU457943 other upstream 1028120 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 1032213 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 3545415 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 4476603 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 5088232 9765740 ~ 9768036 (+) True G384178
XR_004577401.1 other downstream 492657 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 1166122 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 1279659 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 1677440 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 1786968 16655669 ~ 16657113 (+) True LOC113531241

Expression Profile