RNA id: TU458941


Basic Information

Item Value
RNA id TU458941
length 1339
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G387208
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14934704 ~ 14936042 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTTGTCAAAAGTCAAAGCAGAGTCAAAAGTAATGCCTAAATTTCTAACATGTGAATGAAGATTACTAGATAGAGGTCCCAGTTTACTGGCCACAACCTCTGTAAAAGCAGGGGAGCCAAAAATTAAGACCTCAGTCTTAGACTCATTTAACTGGAGGAAGTTGGCAGACATCCACTGTTTAACATCTCTCAGACAATCAAACagacactgtaaactggagacatcCTTAGGATGCAAGGGAACATAACACTGAGTATCATCTGCGTAACAGTGGTATGAGACATTGTGCTTCTTGAATATAGCATACAAAGGAAGcatgtataaagaaaataaaacaggaccCAGAATTGAGCCCTGTGGAACCCCATACAAAACTGGTGCACAAGATGATGAATATTTGCCAGTCTCTACCGAGAAAGTTCGATCATTTAAATAAGATACAAACCAATTTAAAGCATGACCTTGTATCCCAATTTGCTCTAAGCGATTTAAAAGAATGCCATGATCAAGAGTGTCAAATGCCGCACTAAGATCCAGCAAAATTAAAACTGCACAGTTGCCGGAATCGACAATCAACAATAAGTCATTTAATACTTTTAGCAATGCAGATTCTGTACTGTGTTGAGGTCTGAAACCAGACTGATATTTATCGAAATTACCATTTTCCTGTAGAAAAGAAGAAAGCTGATTAAACACAACCTTCTCCAAGACTTTTGATAAAAACGGTAATTTAGAGATGGGGcggtaattatttaaaactgttggATCAAGATTTGGTTTTTTGAGTAGCGGCTGCACAGTGGCATGCTTAAAATAAGATGGGACTATTCCACTGATTAAACTGCTATTAATTATAGACAATAAACTAGGACTAATAATGTCGAATGTCTCTAATAAAAGACGAGGAGGAACAACATCCAATGAACAAAAAGTGGGCttcattttatgaataatttgcACCAGGTAACTGTGAGACACTGGagtaaattcatataaatatgtaGGAGTTGATGTGGACTGAGGGAAGTCCAAAGAGGAAGGAACAATACATGATCTTATAACATCAATCTTGTCAGTAAAAAACTTAAGAAAGTTTTCACAGGCCATAGGAGACGGATCAGGATATAAATTAGACATAGGATTTAGCACACTATTAatagtattaaataatatttttggacTATGAGCGTTTTTAGCAATGAGATCAGAGAAATAATTCGCCTTTACAATCTTAACAGTTTTTTGATATTGAATCATACACTCTTTAACGCAATCATATGATATTTGTAATTTATCCCTCTTCCACTTCCTTTCCGcttttctccatttctgtctAAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458926 lncRNA upstream 9839 14834919 ~ 14924865 (+) True G387196
TU458927 lncRNA upstream 66003 14856268 ~ 14868701 (+) True G387197
TU458889 lncRNA upstream 218649 14708856 ~ 14716055 (+) True G387160
XR_004577415.1 lncRNA upstream 750653 14152144 ~ 14184051 (+) False LOC117596237
TU458144 lncRNA upstream 759279 14170058 ~ 14175425 (+) True G386495
TU459148 lncRNA downstream 227342 15163384 ~ 15233645 (+) False c27h11orf88
TU459154 lncRNA downstream 246271 15182313 ~ 15204882 (+) False LOC113531625
TU459156 lncRNA downstream 246271 15182313 ~ 15204587 (+) False LOC113531625
TU459153 lncRNA downstream 267421 15203463 ~ 15204587 (+) True LOC113531625
XR_003403270.2 lncRNA downstream 267459 15203501 ~ 15204268 (+) False LOC113531625
XM_034300511.1 mRNA upstream 18206 14862358 ~ 14916498 (+) True arhgef12b
XM_026921636.2 mRNA upstream 73960 14858557 ~ 14860744 (+) True tlcd5b
XM_034300876.1 mRNA upstream 73960 14858557 ~ 14860744 (+) False tlcd5b
XM_026921630.2 mRNA upstream 78763 14811102 ~ 14855941 (+) False mcama
XM_026921632.2 mRNA upstream 78763 14811104 ~ 14855941 (+) True mcama
XM_026922535.2 mRNA downstream 161026 15097068 ~ 15138075 (+) True drd2b
XM_026921448.2 mRNA downstream 290303 15226345 ~ 15233692 (+) True c27h11orf88
XM_026921447.2 mRNA downstream 298877 15234919 ~ 15242995 (+) True layna
XM_034300431.1 mRNA downstream 298877 15234919 ~ 15242995 (+) False layna
XM_026922534.2 mRNA downstream 308963 15245005 ~ 15261736 (+) True sik2a
TU457943 other upstream 1106556 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 1110649 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 3623851 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 4555039 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 5166668 9765740 ~ 9768036 (+) True G384178
XR_004577401.1 other downstream 425316 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 1098781 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 1212318 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 1610099 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 1719627 16655669 ~ 16657113 (+) True LOC113531241

Expression Profile