RNA id: TU459555


Basic Information

Item Value
RNA id TU459555
length 1734
RNA type TUCP
GC content 0.39
exon number 3
gene id LOC113531248
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16034823 ~ 16038605 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCGCAAGAGAAAGTAATACGTAACCACATATTACAAACCATGACCTCTGAGCATGTTGAACAAAAATCAGTCAGGTGTAGTCTAGTCCCTAAtgaaatctgattaaaaaaaaatcaaaatacaaaAGGGAATGAGTCCAAATAAAGTTATGAATAATTCAGGAAGACCACCCACTGTGAACTACTGGATGATAAAGGGGAAGAAGTCAGAACATGAATACACACTGAaaactgtatgtttttgtttttaattttatggaaGGTAATGCTAAAGGCCTCAGTAAACACACCCAGCCACAAATTCTCACACTAAGCACACTTCCGTCTCTCACATACATAGacacattatacacaataaGAGTTTGGATGTATAGTATTATGCTGTAAAATTagaacacacaacaaaaaaaggcaCATCTATGTCAAACTTCTAAAAACTACAAACAAGTGTCTCACTTATTGTGATTTTCATCAAACCTTCTTCTGCTGGTGTAGCCTGCACAAACCACATCAGCTAAAGTTGTACTGACAGTCATGTAAACAAAGACTTGATTTTGCAGCAAGAGAAAGCGAAAGTATAAATTCTGCAGGAAATCCCCTGCTTGTTTTTTCCCTACAAAAACTAACTTCCCCAGCATTAACAGCAgctttaacaggagtgtgtgtgtgtgagagagacagagttctTTACTGAGTGTCAGGTGCTGCCAAGAAGGATCGAAGTCATGAGCCATTCCACGACAAAGCCAAAGTGTCCAGGTTGCCATCAGGAAGTTGTAACGATTTCGGAAGGGCAGAGTGTTGCGTGCCCATTGTGTTCCAAACAAAAACGTCGTGTGTTTCGCTTCTGCAGGGATTGTCAGAGAGAGTGGCCATGCAGCACTTCACCAAACAGCAGCTGCACACTGCCAAACTGCGCTCTCCGTGCTGCTCTGCTCTCCGACAAACGGATCAGTGATCCCAACAGTTCGGCAAAGGGATGCCCCTATTTCAGGGCCTGTCCTAAGTGCAATGCCCTGCTCACACACAACGGACAAGGCTGCCCCAACATTGAATGCCCTGAGTGCTTCCACAGAATTCTGCTTCCGTTGTCTTCGCCCAAGCTGCTTTCTCACAGGCTTCAATCTAGCTTTCCTAGGGGATAGGCACAGGATGAATGTAGTTCCACAGGTTGAACAATGTACTATAGTAGATAACAGCCAGAGTCTGATGGCACTTCGTTAGTAGAGTCAGTCTGTAGGAGGTAAAATTTctaacatacaaataaatacaatttcacACTTGAGCTACAGACACATATAGGTTTTGCAGACAAGGCGTTAGAACTCTGCAAGAGGGTTCAGTCTCTCGGAGTAGGGTTGGAAATCTTTAAAATACAGTTTAGGTCATATTGTGCTTCTttgatataaaaatgatttcactgtttttaattaaaatatatttaaataatggtAAAATGAATCTTTTGTTGATATGTGGTATGTGAGCAAATATGATTTCTGTGTACAAAGGTAAATGTTTTGGATAAATCTGTAAAATGGTGAATGCTAGGAAAACCCAAGTAACCTATTAAagagaattttaaaattaaattgtggttttattttatcatgcttAAATTTTTTAACTTTGAGTCATAAATACACCACTTTCCAGAATGCAAATGAATGATTGATGGAATAATACAATTTGTACATTGATATGCTATAGAAAATAAAGACCAGAAAAAGTCCAC

Function

GO: NA

KEGG:

id description
ko04612 Antigen processing and presentation
ko05332 Graft-versus-host disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459553 lncRNA upstream 47781 15942086 ~ 15987042 (+) False G387707
TU459551 lncRNA upstream 47781 15971935 ~ 15987042 (+) True G387707
TU459537 lncRNA upstream 93762 15938930 ~ 15941061 (+) True G387704
TU459501 lncRNA upstream 223163 15807549 ~ 15811660 (+) False LOC113531170
TU459498 lncRNA upstream 230900 15797594 ~ 15803923 (+) True G387675
TU459763 lncRNA downstream 54861 16093466 ~ 16094779 (+) False si:ch211-284e13.4
TU459774 lncRNA downstream 58760 16097365 ~ 16097567 (+) True G387896
TU459824 lncRNA downstream 103405 16142010 ~ 16142239 (+) True G387933
TU459814 lncRNA downstream 104337 16142942 ~ 16210315 (+) False lrch2
TU459828 lncRNA downstream 178432 16217037 ~ 16217667 (+) True G387937
XM_026921721.2 mRNA upstream 14353 16008522 ~ 16020470 (+) True slc12a9
XM_026921759.2 mRNA upstream 27725 16003620 ~ 16007098 (+) True LOC113531196
XM_026921700.2 mRNA upstream 53401 15943731 ~ 15981422 (+) True mink1
XM_026921701.2 mRNA upstream 53401 15943731 ~ 15981422 (+) False mink1
XM_026921702.2 mRNA upstream 53401 15943731 ~ 15981422 (+) False mink1
XM_026921712.2 mRNA downstream 2109 16040714 ~ 16056993 (+) True gucy2d
XM_026921713.2 mRNA downstream 2109 16040714 ~ 16056993 (+) False gucy2d
XM_034300912.1 mRNA downstream 3273 16041878 ~ 16056993 (+) False gucy2d
XM_026921780.2 mRNA downstream 19508 16058113 ~ 16063703 (+) True si:ch211-284e13.6
XM_026921796.2 mRNA downstream 28598 16067203 ~ 16069808 (+) True LOC113531220
XR_004577401.1 other upstream 667576 15361358 ~ 15367247 (+) True fkbp6
TU457943 other upstream 2206675 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 2210768 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 4723970 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 5655158 10378213 ~ 10379665 (+) True G384593
trnam-cau_49 other downstream 109755 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 507536 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 617064 16655669 ~ 16657113 (+) True LOC113531241
LOC117596262 other downstream 1236894 17275499 ~ 17276968 (+) True LOC117596262
TU460579 other downstream 1239285 17277890 ~ 17280519 (+) True LOC113531069

Expression Profile