RNA id: TU459824


Basic Information

Item Value
RNA id TU459824
length 230
lncRNA type inter_gene
GC content 0.60
exon number 1
gene id G387933
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16142010 ~ 16142239 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

aacacacacccggagcagtgggcagcctttttttgctgcggcgcccggggagcagttgggggttcggtgccttgctcaagggtctcacctcagtcgtggtattgagggtgggagagagcgctggtcattcactccccccacctacaatccctgccggacctgagactcgaacccacgaccttcaggttcaccttcgggttgcaagtccgactctctatccattaggccac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459774 lncRNA upstream 44443 16097365 ~ 16097567 (+) True G387896
TU459763 lncRNA upstream 47231 16093466 ~ 16094779 (+) False si:ch211-284e13.4
XR_003403226.2 lncRNA upstream 103904 16035231 ~ 16038106 (+) False LOC113531248
TU459553 lncRNA upstream 154968 15942086 ~ 15987042 (+) False G387707
TU459551 lncRNA upstream 154968 15971935 ~ 15987042 (+) True G387707
TU459814 lncRNA downstream 703 16142942 ~ 16210315 (+) False lrch2
TU459828 lncRNA downstream 74798 16217037 ~ 16217667 (+) True G387937
TU459829 lncRNA downstream 75524 16217763 ~ 16218231 (+) True G387938
TU459830 lncRNA downstream 76526 16218765 ~ 16220819 (+) True G387939
TU459867 lncRNA downstream 207802 16350041 ~ 16361001 (+) True G387973
XM_026921768.2 mRNA upstream 10221 16120792 ~ 16131789 (+) True LOC113531200
XM_026921730.2 mRNA upstream 23958 16108565 ~ 16118052 (+) True LOC113531178
XM_034300470.1 mRNA upstream 23958 16108565 ~ 16118052 (+) False LOC113531178
XM_034300471.1 mRNA upstream 23958 16108565 ~ 16118052 (+) False LOC113531178
XM_026921710.2 mRNA upstream 45826 16077089 ~ 16096184 (+) True si:ch211-284e13.4
XM_034300716.1 mRNA downstream 743 16142982 ~ 16208908 (+) True lrch2
XM_034300717.1 mRNA downstream 743 16142982 ~ 16208908 (+) False lrch2
XM_034300718.1 mRNA downstream 743 16142982 ~ 16208908 (+) False lrch2
XM_034300719.1 mRNA downstream 743 16142982 ~ 16208908 (+) False lrch2
XM_034300562.1 mRNA downstream 78735 16220974 ~ 16239151 (+) True zgc:163098
TU459555 other upstream 103405 16034823 ~ 16038605 (+) True LOC113531248
XR_004577401.1 other upstream 774763 15361358 ~ 15367247 (+) True fkbp6
TU457943 other upstream 2313862 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 2317955 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 4831157 11297980 ~ 11310853 (+) False ajm1
trnam-cau_49 other downstream 6121 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 403902 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 513430 16655669 ~ 16657113 (+) True LOC113531241
LOC117596262 other downstream 1133260 17275499 ~ 17276968 (+) True LOC117596262
TU460579 other downstream 1135651 17277890 ~ 17280519 (+) True LOC113531069

Expression Profile