RNA id: TU460079


Basic Information

Item Value
RNA id TU460079
length 4420
RNA type TUCP
GC content 0.44
exon number 3
gene id cdc42ep2
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16546110 ~ 16555546 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGCGCGCGCGGCGCAGCACCGTCTCCGCTGCTCGGGTTGTTATTTTCCGCACACAGCGCGTGAGGAGGAAATATCAGAGTCCCGGTCACAGGCGCTGCAGGGGGGCAGACACGCGGGGGCTCGCGCTCCGGGCTGCTGGAGACTCATCTGCTCTCAGGACAGAAGTGAAAACCCGGACAGAGCGCGCGCAAGAATGGAGTGACAGAAGGGATGGAATTTGATCTCATTAGCATCTCTTGGTGTGGAATTTTAGTGGGAATGCTCGACCTGAAGACCTGTCGCTCCTAGGATCTGGGTCTGCAGTGCTTCTGGTTCCTCATCTCGCCtcgtctttctttctctctgcacgGTGTTGCGCGAGCTGTCTCTGTGTTGCTCCGGGGGACACTCGGTGGCCACCATGTCCTCCAAAGCACCCATCTACCTGAAGCGCCGGAGCCGCAAAGGCAAGAAAGAGAAGCTGCGCGACCTCCTCTCATCCGACATGATCAGCCCTCCGCTGGGCGACTTTCGCCACACCATTCACATCGGGAGCGGCGCTGGCGGCGACAACCTCTTCGGCGACCTTCTCCTTCCTCCAGGGCAAGTTCCACCTGTTACCCGGGCATCAAGACCAGCAAGGGGCAATCCAGTGGAGCTGCGCTGCCACTGAGAGTTCACCGCTGCTCAAGAACGctctttcacttcctgttatCGGAGGAGTGCAGGCACTTACGCTTCCGCCCTCAGCCCCTGTTGCGTCACAGCCTCTCGCCCCTGCCATGGCTCCGCCCCCAAAACCTCCCAGACTGCACCTGGAGTCGCCCCAAACGTCACTTCCTGGCTCCCCGAAGCGCTCTCCTGATCACGAACAGCCTTGTGTTGCAACAGAGGAAAAGGAAAGCGAGGAAAAACAAGGAGAGAAAGACGACGAGCATCCGTATCTGTCTCACGCTGGCTCCCTGCTCTCGCTCCACTTGGACCTGGGGCCGTCCATCCTAGAGGACGTCCTACAGATCATGGACACTCAGAGGATGGGAGGAATCGGTGGAGGATTCACGCCAAACGGACGACAACAGGAGTTTTCAAGGCtacagagaatttttttttttcttttcttcatccaTTATGGGAGATAAAAAATACTGACAGCTTTTATGACTTCCTGGTCTTCCTCCTCACTCTCCTGAGCCactgattaaatattaattaatcttTCAAACCAGATCTACAGCCTAGACTGCAATTTCTGACGTAGCGTGTGTGTCTGGATCAGTTTTTCAGTCGAGGGATTAACTACAGGGGAAGAAAAACGACCTTCTCTCAGCACTGAGAATGACATCACCTTTCTCCTCGCTGGTGTTGCCAACTTCTGAACAAATACACGCACCTCTCCTATGATTCcgctcctttttctttttttaaactagagGAGCTCGCATTATGTCCAAGAACTACGAAAAAGGAAAGGTATCTCAGTTAAAgaccaagaggaaaaaaaaaacctgcgtATGTCTTCCATCTTAGTGGAAATGTGAAAAGACTTGGAACGTTGCACCTTTGGCTTTGCTGGATGTTTCTGCACTCCCTCAGGCTGGGACAGTTGATCCCTGTTTTGAGTTCGATCCTTTTTTAGACGGAGGTGTGAGGATCAGTTTGTCACTGAAACCACAGCTTGGGTTTGCGTTTTATACGGAGCCCCAGAGATTTATCATATTAACATATTCGAGCGTTAGAGGGGAATTCCACACGGGTTTTTTCACAATTCAGCTTGGTGAGATGTAAACAAGGTCCTGTAGtgggcttttttaaaaaaaaaatgctccattCTAGAGAAACTTAGTGACTCTGGTTTATTTATACTGGGCCActtttatcaaactggatataaaaaaatatttcataacaaGTTCATGGGGTATTGCACAAGAAGcctggtattcatgaaaatccagttctTTAGGAAAATGGTTGTATGTTTTTCACTCCtgagtttgtttaaatttacataTGAAGAGACTCATTAATGTGATTGGCTGCAAATCGTGAAAGAAAGTGATCCagaacaaatccataaatgatACCAAACATGACTAGCtgttcaattaggacaaaagtaaacagaaaaatgattttaacttCTAGTGGAGTTCACATACTTATGAACGTGAAAAAGTAACAGACGGATACTTtggaaaaagtgaaaagggacGTAAAAATGTAATACTTTTTCTATTTTGGAAGTTGCCATAATTCAACAATCTTATTACAATGAACTAATTTCTTAATGAAATACCTTAACACCTTAAAGATCGGATTCCATTTGGCAGAATCTAGCAATCTCAACCTGATTATCTTGCTAAAGTAAGAGATATACCCAAGCAcctaaaaaaaacctctttaagGGCTCAAACGTGGGCAGGAAGGGTGGGCGGTTCGGTCAGTTGTGAGGTTCAGAGGTTGTTGGTTATATTTtgcattcataaaaaaaaaacaacaacaacaacaacactggaGCGTTTGTACTTATATGTTCTTTCCTCTGTACATCCTGACACTTTAATAAATTATTCTTAGCAAAAAGTGAATTGTGACATATCACagtttgtgacaatatccatttgggggcggggcttgatGTCAGTGGGCGTGAAGTACAACGGTAGCAATGCTAGTGATCATTCATTCTgtccatttatttcttttaatatacCATCAGAATGCTAAGTAAATGGTGTGGAAGTAAATATTGCAGGGATTAGGAGAGGGAAAAGACtcttatggagtggataatggtCGTAGCAGCCGTGTTGAGGATACAGCAAAttagaaatgcgtgcgcaccacagTGACCACCAGGCAAAGAAGGAACCATGAAAAAAGTGTCTTCCTTTTCCAACTTTTTGGGCAAGATTTAGGTCTTTTTTTTAGGTCTCTGCACATCACTGACCGTTTTGGTGCAGCACCTTTCTTTGAAGGACGCTGGTTCTATTCACATTTAGCCAGAAGCTAACAGCTGAATGTGCAACGATATGCAGAACCTAAAAACATCTGTAAAAAATCTGTAATATGAAAGAGAGACGAGTATCACTCGTATTAGTGCTAGGACCTACAAAGGTCAAATGCAAAGGTGACAAAGGTGAAATGccaatgaacatttttaatgttcacttaaaagaaacatttagcTGTCAGGTTTCTCTAGAAtgttgtatttaatatattttctgtCATTAAAAACTCTAAACGACTACTTTTCATGCATTCACGTTGTATAAAACAGGTTGGAAAATCTGTGGAATTCCTCTTTAAGACTTTTGCTAGTGTAAGACGCAGGGTAAAGAGCGAGGTCATGTGACACTTGGTGTACTTTAAGTCAACAGTGAGTAGATCATTACCATATTAACCGACTCAAGGTGAAATCGTTAAAGGAACGAGCACTGATTTAAGCTTATGAGGCGTAAAGAATGTTCCGGCTCAAAGCCTTACTGCTATAACGTCCCGCTACGTGACGAACACTGTATTTCCTGTATTACTTAGCAATAACAGATATTAgcaacatattattattattattactgttattattgttcATAATAGCGCTATATCTTATCATGAGGGCATCCTTATTCATGATGACATCACACTGAAGACTTAATTATCCACGattctttttatcttttcatgATTAATCTCAGTGAGAACGTCTGCGCCTGTCCTGTACTCGTCTCGACTATTATGGGATGGGAGATACAGAAAGTCTATTTTTAGTCACGCACAAACACTTTTCTCTTCGGAAAATGTGATTAGATGTTCAGAAGTAAAGGACACATCGTGAGCCAAGCTAGCGTGATAGCagctgtggagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgggtgcactGTGTACTAGTGTGAAGCTTGCGTGTCAACACAATGACAGTTACTATGGTTGTGTTGTCATAAATCCACATAGAGGCCTTGAGGAGTGAAGCATCATGggaaggaggagaggagtgtCGACAGCTTGTGCAAGTTCTACAAAgttctttttttgctttctgtcCAAACCCTGAAAATgtgccttttctctctctctctctctctctctctctccaacctgtgaattttctttctctgcGAATGGTCTTTCTCtgcgttatttatttattcccagATTCATGAATTTGAAACACTACACATCTAAACCACAGATAAGCTGAGATAGAGGTCTGTAACTATTTGTTTTATGCAGTACGCAAACGTAATGGTTACACTTCTGTAATCACtctccctgacacacacacacacacaccactctcaaCTGATCGTACAGAAAACTTTCCCTCTGCTGCTGTTGTGTACATGAGCTCCCAGTCCACTGAATAATGAGAATTCTATAATAAGATATAGttataaaatatcaataaaggA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460063 lncRNA upstream 96474 16449464 ~ 16449667 (+) True G388145
TU459867 lncRNA upstream 185140 16350041 ~ 16361001 (+) True G387973
TU459830 lncRNA upstream 325322 16218765 ~ 16220819 (+) True G387939
TU459829 lncRNA upstream 327910 16217763 ~ 16218231 (+) True G387938
TU459828 lncRNA upstream 328474 16217037 ~ 16217667 (+) True G387937
XR_004577438.1 lncRNA downstream 113473 16669005 ~ 16670716 (+) True LOC113531478
TU460179 lncRNA downstream 295856 16851388 ~ 16856409 (+) True G388236
TU460231 lncRNA downstream 444204 16999736 ~ 17002362 (+) True G388276
TU460466 lncRNA downstream 479927 17035459 ~ 17036456 (+) False G388463
TU460467 lncRNA downstream 479927 17035459 ~ 17036456 (+) True G388463
XM_034300818.1 mRNA upstream 17564 16454172 ~ 16528577 (+) False LOC113531476
XM_034300820.1 mRNA upstream 17564 16472460 ~ 16528577 (+) False LOC113531476
XM_034300819.1 mRNA upstream 17564 16475823 ~ 16528577 (+) True LOC113531476
XM_034300821.1 mRNA upstream 19486 16475823 ~ 16526655 (+) False LOC113531476
XM_026921709.2 mRNA upstream 103013 16395346 ~ 16443128 (+) False ltbp3
XM_026921763.2 mRNA downstream 6678 16562210 ~ 16575004 (+) True dpf2
XM_034300824.1 mRNA downstream 37894 16593426 ~ 16623299 (+) False myo1ca
XM_034300823.1 mRNA downstream 44152 16599684 ~ 16623299 (+) True myo1ca
XM_026921715.2 mRNA downstream 44153 16599685 ~ 16623299 (+) False myo1ca
XM_034300822.1 mRNA downstream 49209 16604741 ~ 16623299 (+) False myo1ca
trnam-cau_49 other upstream 397709 16148360 ~ 16148432 (+) True trnam-cau_49
TU459555 other upstream 507536 16034823 ~ 16038605 (+) True LOC113531248
XR_004577401.1 other upstream 1178894 15361358 ~ 15367247 (+) True fkbp6
TU457943 other upstream 2717993 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 2722086 13821788 ~ 13824055 (+) True G386294
TU460111 other downstream 100137 16655669 ~ 16657113 (+) True LOC113531241
LOC117596262 other downstream 719967 17275499 ~ 17276968 (+) True LOC117596262
TU460579 other downstream 722358 17277890 ~ 17280519 (+) True LOC113531069
XR_003403218.2 other downstream 722935 17278467 ~ 17280328 (+) False LOC113531069
TU460582 other downstream 726512 17282044 ~ 17289481 (+) True rpl36a

Expression Profile