RNA id: XM_034300806.1


Basic Information

Item Value
RNA id XM_034300806.1
length 5411
RNA type mRNA
GC content 0.46
exon number 17
gene id radx
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 17390866 ~ 17412842 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGAATTTCATACACGAAGAAGAGACCAAACTGTTCGGCGCTAATAAAACCCGGAAGTAaatagtttgtttttctttacaaGTTTGGTTTATCTGAGTATACAGTTAAGAAGCTGGGTTTATTGTTATATAGAATGGGTTAATAACTAAAcattaaatgtgcatttttttcttttgttgaataaaatgtaagaatATGTGAGATAAATAGTTGAGTTATAACGGAGCTGGTAACAGAAGTCAGGATTAGCCGCTGTGAGGAAGCTAATGTTATGTAAGCTAATGTTTCAGGCTCGGTTCTGGCTGAATGGCGAACCGGAAGAATTCTGAGTCTGGGGGTGAGTCTGAGTTGTTGTCTGCTTTAGAGCAGCTCAGCTCGTCCAGGACGCTCCGCTTTAAACCCGTTTCCCCGCTGCGTGTCGCCGTGCTCGCGCTTGACCGCTATCTGGTTGACGCGCGCGCCGCTCCCGACAGCGACAGCAACAGCTACAGCTACGACGTGACGATCACCGACGGAACATGGCGCGTGAAGTGCTGGCTGGCGCCGGGACTGAACCGCATGGTCCAGGTGAACTCTCTCCGGTGCGGGTCGCGCGCTCTGATCGCGCACCTGTCTCTTGTTCACGACGAGACGCGGCTCCGgcgcagctgtgtgtgtatagaggAGGCGCGATCCGATTCCTCCGATCCCGATATTTTACTCGCGATAAAAGACCCGGATGCGATACGGTGGTGGACGCACGAGTCTGTCGGTTCTTCTGTGATGCCTCTCGCTGATGTTCCTCTGCAGTACAACAGAAGACATTACTTATCGCTGTGGAACAATGAAGATCCGCACGGCGCGCTGTGGCTTCCCTTCACTCCTCCACCGGATGTAGCGATAGACGtatcTAAGATTTCTCTTCTGGGAGATTTGGATGTGTTCTTGGCCTCATCCAGAAGGCCGTTTCCTCTGCTGGTCCGAGTGCTGCACAGATCTCGTTTAAGGTACTACGGAAAACCTGGACAAAACATCGACTTCCCCTTTCAGgCGTACTTCGAGGTGGCTGATCAGAGCGGAGTCATGTCCATGGTCCTGTGGAATGACCTGTGTCCGGAGTGGTATCAGCGGCTGGTGGTGGGTTCAGTTCTTTACCTGCAGCATTACAAACTGAAACGCAGCTACCAGAACCGCTCCAGACCTCAGCTCAGCACGCTGCCTCTCATCTCCTTCAGCTCCACAGAGATCTGCTTGAACCCTCGAAGTCCGTCAGCCGTCATCACTGTGATTCCTCCTAAAAGCGTTCAGCCTCAATGGAGCTTACCCGAGGTCACCTACAATTTCTctaccagATGTGAAGTCGAGAGTCTGGCCAGGAACCAGGCCTGTGACATCATCGGCCTGGTGACGTACGTCAGCCGCGTCGAGCGAATCAGAAACAGAGCAAATACAGtcccGGAGAAGTTCTGGACGTACCGGTGGGTTCATGCAGTGGATGGAACCTCAGACTCTCCCTTCATCCTGGAGATTTTTGCCTCTTCTCAGCCCGAGATCTTTAACAACATCTCTCCCATGACGTATGTCGTGTGTACTCACATGCGTGTGTGTCGGGAGACGGGTTCTGCTCTTTACCTGACCAGCAGCACAGAGACTCAGCTCTTCGTCACAGGCTGCCACAGGAAACAGCCGTATGTGTCTGACCCGAAGGTCAAAGCCTTCATCCAGTGGACGAAGACTCTGAAGGACAGTGTAGTACTGAGGAAGACCACAGTGGGGGGGCAGTACTGTTACCCCCCTCCCCCACCCACCTTCACACCAAATACCACCAGCAACGGAGCGAGTGAAGGAGCGTCTCCATCGTTAATGGCCGTAGGAGACCTACGGAAGGAGCTAGAGAGTCTGCAGTATCGAGAACACAGGAGAGTGGCAGTACAGGGCCACATCACTGCTGTGCAATACCACCGGTGGCCACCGGAGGCGCCTCACACCACGCCTCAGAGCGAACAACGACCGGTGGAGCATGACCCAGTGGGCGTGGCCAGAGGCTCCACCTCTTCCTTTGGCACCGGAGCACAGCGACAGGGCGAGACGTCCTCGGCGTCGTCACGAAGTGAAGTCGCAAATTCTCCTAAGCGGAGGAGAGTTGAGCAagGAGTGCAGAGGCAGTACTGGACCAGAGCCAAGCGGCAGTTAGAaagaCAGGTAAAGCCAGCAGATCTTCATGAGGATGAGGAGACCAAAAGAAGGTCTGATGAAGAGGACAGTGAAGGACTTTCCACGCCGTCACCTCAGCCTGCAGACAACAGTGAGACAGGAAGCCCCCCCGACACACAGCAATCTTCCACTCAGCCTGTTGCATCATGGGAGAGCAGCGCGTGGCCGTTACTTAAGCAGGACGTCACGGATCACGTGCGCTGCGCCTCTCTGGATCGTGAGAGTGTTCCGGAAAAATTCCGATTCGACGACCGAGACGTGCTCCTACACAGGGTCAACCTCAGCCCCGCGAAGTGGAGCCCGGACCTTCCATCAGACACCAACtcggacacacacactcctgtaaacTTCACAGGATACCTCACTCTCACATTACTGGGGTTAAATCAGCAGGCAGCGGTCGACTCCCTCTTCCTCCCCGTGTTTTGTGCCGAGGATCCGCGGGCAGTAGGGACGTCCTACGGTCTCCATGACAACACACTGATGTCATGCCTTTCCACAGGTCGTGTCTGTACTCAGGCCAACTTttcaccagAGACATTATTGAGCTCGGCATCGGCTCTGGAGGACGAgcgcgtggtgtgtgtgttggacgtGTGTCTGCTGGGTGAGAACCGGCTGGAGATGATCTGCTCTAAAGTGTACAGGACAGCAGATATCATCACTCCTGTgaaaaaaaaaggagggcgAGCCTGCAGTGACACTGGAGTGACACGAAGAGTTCTGGAGTGCAGAAGGgcagaaagaaaagagcagcGCTTTCTGATGGAGAAGTCTCAGTGCAACTTCCACTTCACTCAGCAGGGCGGAGAGCAGGGCGGGAAATAAGTGCCCTAAACCACAGTGAAGCCCAGGAgaacggacacacacacacacacacacacacacacacacacacacacgtgtatatatATGCAATCGTACATATGATGCTGGAGATGCTTTAAATTCGGTCCACAGTGGAGTTTAAAATATGAGGACATTCTACATCACGGAAACGTAAAggacagaaagtgtgtgtgtgtgtgtgtgtgtgtttgtgttaagttTTTCAATAGTCTGTACAATttacactgttaaaaataattacattcgACTCGATTCAGGTACGTCCCCCAGCCGTTCTATTCACACGGTGATGGAATGTGAATACAGTAGAACACTATGAGAAAAGCTGCGTGGAAAACACATCAGTAAATACATTTCACACAACGTTGATGTGGACTCGAGCGTAGACGCAGAATTTCCCCCTCCGATCAAGTCAACATACAGAATTAAACAGAAATGATCCACATTCATTTCAGCAAAGCTCAGttttaacacaacacacacgggCCCTGATTCAGTACTGTTCCTAACACACCATGACTCGCTTCCTCACGCCACTCCACGTTGATTAAATTCACTTTTAATGCAAGTGAAACTAGTTATAACATTCTCAAAGATTTACCAGTTTCAGAAGGTAAACCCTTTAAACCCAGCAACTAGAGTTGGTTAGAAATGTAAACAGAGCAATGAagtactttaaatatatatcatttCTGACAACTGTACATGTAGTTAGCAAGTCTGCTAATTAGCACACAAGCGAATGGACTGCACAAAACGGTGGCtgatcagaaaagaaaaacagtgaggGTGTGTTAAGGACagtactgaaacacacagacagtatttTTCCACCAGCACAGCGCCGAAGCCAGGGCTAGTCTGAAACAAACAGAACTGAAAATCCATCGCTAATGCTAACCTTTGAGCAGTTACAAAGAATCAAAACATATCCTGTGCACATTTCTGATCTTTTGTGTTCTGTATATAGATTCTGCATAAATTCTTGTGATGGGcgattcataaaaaaaaagattcgcTCATTTTGAGTGACACTCTCAGTAAAAAAGGCAAATCGATTCGGAAACATGAGAAAATGTGGATTAAACTGATCGTATTATACAAATATTGTAGAATAATATGAAACCATGAATGAGTCgtgaatcaaatgaataaaaaaaactaatcttTGATTCATTTTAAGGAGTCGTTTGAAAGATTTGAATCGCTTAAATTGATCATAATGCCCATCGCTAGCAAGAACGTGATCGACCCGAAATTTGAGCTAGAAACCATCCAGATCTGTTACTAATGGTTTAAATCTCAAATCAAAAAATCCACTTATCTTGATCTCAGTGTAATCCTGGcttctttaataatttattttacgTAAGACATCATTTTATAGAgtgacattagctagctaatcacTCTATTAGCTTGTTACATCTAGCTACTTCATTGACAACcgctgtatagtgtatagtatatataatatatatatatcgctaACCAGCTAGCTGTATTAAACAACATGTGTATGTTATGGAattgttagctaactagctgtgTAGCTATCGTACTCCCATGCAGACAGCACCTGGAACctattattatataaatcaattatttttaaCGATTTAAATATAAAGAGCCAATTAATTTAAATCTGGATCATTAGCATTTACGGCTGTGTGATTATAGCATGACGTTACCGCGACAGCGACGTGAAATTGTGGATAAATTCAGCTAGACAAACAGCTTCGGCTCCGTGTTGGTGGAAAAAAAGTCTAACAGATACTAAATTCAACTGAAAATTCTACAGAATCCTCGGAGTTACAGAATTTTCTTCTAAAAATTTTAGAATCCTTAGACTTTGAACTCAAACTTCTggtattttctaaaaaaaattttttgaaaCCATAGACATTCAAATCAGAGTTCTGGAATTTTCAAAAATTTTTAGAATCCTTGAGCTTTGAACTCAAACTTCtagaattttcaaaaaaaaaaaacaaaactgaatctGTGGACTTTCAACTCAGAGTTACAGAATTTTCATCTAAAAATTCTAGAATCCTCAGACCTTGACCTCAAAATTTTGgatttttctaaaaattttAGAATCCTTAGGCTTTGAACTCAAAATTCTagaattttctaaaaaaaaaaaaaaatttgaatctgAATCTTTCAAATCGGGGCTCTGTAATTTTCTAAGCACTCTAGAGTCCTTGGAGTTTGAACTCCCAGTTTGGGAATTTtctacaaatttaaaaatcctTGGACTTGAAACTCGGAGTTCCAGAATCTTCTAGATTCAAAATTCTTCGAATGTTGGACTGGAATTATCTAAAAAATTGTAGAACCCGagtaggcaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577452.1 lncRNA upstream 61632 17327564 ~ 17329234 (+) True LOC117596270
TU460533 lncRNA upstream 161622 17210017 ~ 17229244 (+) True G388507
TU460537 lncRNA upstream 188249 17194324 ~ 17202617 (+) True G388508
TU460543 lncRNA upstream 220187 17170453 ~ 17170679 (+) True G388514
TU460477 lncRNA upstream 334956 17049087 ~ 17055910 (+) False G388468
TU460583 lncRNA downstream 42653 17455495 ~ 17461055 (+) False hmgn7
TU460654 lncRNA downstream 161885 17574727 ~ 17620017 (+) True G388619
TU460684 lncRNA downstream 274162 17687004 ~ 17738681 (+) True G388640
TU460700 lncRNA downstream 338357 17751199 ~ 17751441 (+) True G388656
TU460703 lncRNA downstream 341735 17754577 ~ 17754895 (+) True G388658
XM_026922200.2 mRNA upstream 1440 17349263 ~ 17389426 (+) False npas2
XM_026922193.2 mRNA upstream 1440 17349264 ~ 17389426 (+) True npas2
XM_034300804.1 mRNA upstream 1440 17353836 ~ 17389426 (+) False npas2
XM_026922198.2 mRNA upstream 1440 17363131 ~ 17389426 (+) False npas2
XM_034300805.1 mRNA upstream 1440 17364074 ~ 17389426 (+) False npas2
XM_026921906.2 mRNA downstream 42652 17455494 ~ 17461069 (+) True hmgn7
XM_034300655.1 mRNA downstream 136751 17549593 ~ 17573276 (+) True brwd3
XM_026910413.2 mRNA downstream 163617 17576459 ~ 17581767 (+) True chmp1b
XM_026910377.2 mRNA downstream 173249 17586091 ~ 17594361 (+) True cnga2b
XM_034300961.1 mRNA downstream 183353 17596195 ~ 17625334 (+) True LOC113524235
TU460613 other upstream 46067 17341425 ~ 17344799 (+) False vma21
TU460582 other upstream 101385 17282044 ~ 17289481 (+) True rpl36a
TU460579 other upstream 110347 17277890 ~ 17280519 (+) True LOC113531069
XR_003403218.2 other upstream 110538 17278467 ~ 17280328 (+) False LOC113531069
LOC117596262 other upstream 113898 17275499 ~ 17276968 (+) True LOC117596262
TU460649 other downstream 183377 17596219 ~ 17602819 (+) False LOC113524235
XR_004577427.1 other downstream 188469 17601311 ~ 17601510 (+) True LOC117596240
TU460676 other downstream 246886 17659728 ~ 17662430 (+) False LOC117596208
TU460702 other downstream 338736 17751578 ~ 17757363 (+) False LOC113524245
TU460701 other downstream 340644 17753486 ~ 17757363 (+) False LOC113524245

Expression Profile