RNA id: XM_034300431.1


Basic Information

Item Value
RNA id XM_034300431.1
length 2077
RNA type mRNA
GC content 0.45
exon number 6
gene id layna
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15234919 ~ 15242995 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAAAGAGACTCCGCCCACGATCAGCAGTCTAATTTAATTAATCTGAACTTAATTAACGCGCTCGCGTGACTGAAacccctcacacactcctccctgATTTCCTGCGTGCAGTGTGCGGAGACAACACAGGGTTCatacactgctacacacacacacacatacacacacacggagaaccTCACTCAATCTGTGGACTGTCCatttgtagaaatgtatttaatgtttcatgtttaaaataCGCATTTCATCTGTAATGGAAGCCTGAGAAGAAACAGTGAAATGGATGTGAGGAGAGTTTTAGCTTTTTCAGCGCTGATGCTCAGTGTGTCGACTTCAGGATCCAAAGTGCTTGGTGGCCAGAATATATGCAAGCGGGGCACCAACATACCCTGCTACAAAATCGGCTACTTCGAGGACAGCTGGCGTAAATTAAACTTCGAGGAGGCCCAGCGGGCATGCAGGAGTGACGGAGGAGACCTGCTCAGCATCGAGTCAGCGGCTGAGCAGAATCTCATTGAGGGCTTAATTCAGGAGCTGAAAGCTTCAGATGGTGACTTTTGGATCGGTCTACGCAGAGAGCCAAAGTATGAGGAGAGCAGCACTGACTGCGAGTCTCAGTACTATTGGCTGGATGGAAGTCGATCAAATTTCAGGAACTGGCACACGGATGAGCCCTCCTGTGGTTACgaggtgtgtgttgtgatgtaCCACCAACCATCAGCTTCATCAGATGAGGGAAACAAGTACATGTTCCAGTGGAATGACGACAACTGTGAGACAAAGAACAATTTCATCTGCAAGTATACCAAAGATATCTTTataacaacaacgacaacagaAGTAGCCAGGAACCCCTCAGTGACGGTTCACGATGATGGGATGAGTGTTGTGGCTGCTGAACATACAGCAAATGGAGTTTTCTGCTTCAAGCTGTTCACAAAAAGGAGAAGAAAGCAAACAGAGACTCCTGCAGATAAGCATGGGACCTGGGCCCCAGGAGATCGATGCAGCAGCCCAAGTCCAGATGTGTACAACGTGATCCGAAGGCAGCACGAGACCGACCTGAGTGACACTCGGCCTCACACCAAGAACACCTCGTTCCTGGGCTCCTCCCCAGACACACCGACTGACGAGTATGACAATCTGGGAGGCCACGACACTGAGAGCGGCTTTGTCACGCTGGCCAGCACCGAGAGTGGCTTCATCACCAATGACATCTACGAGTCCTACCAGAACCGTTCCAGCAGCAGGTACCACGGAGAACACAGCTGGCTGGATAACGAGCTGTACGGCTACTGAACAAGACTTTGTGCTCTCAGAATATTTGTGATGAAAGAGGCCTTGGGTCTTGGATGTCCTCAGACATTTCAAAGACTTCAGCAGGAAATCAAGGACTGATTTCTTTTGTCCATGTAAATGGGCACCTAGATGACAAACGGCAGTGAGATTGTCATCTTGCAATCAGTTTAGCATAATTACTGATTTAGTCTCCTATGGTAGGCAACAACAAAAAGGCTCAGAGTCTCAGATAATCCAAGATAGTTATCAGCTCCCAGTTTCTGtaaatacaaagacatttcaAAAGACATTTCAGAAGATCAAGACACTTGATCAAGTGTGCACTCCTGTATTCGCATGGAATGACtgttaaaacatgaaaaatgacaTTGACGTGACTTCTTTAAAGATTTGCTTGAGAAATTCTTATTTCCTCTGACTGACTGCTTGTGGAAACTGGGCTTTTACAGACCTTTTAGGGaaatgcattataaaatatatgtagtgtctgtctttttttctgaatgggGTTGCATAAGTTGATGTCAGCCTAAGGCCCTTTGAATTGTCCATGTCTCCAAGAGAACCTAGTGGAAACAGTTCAATTAAATCTATGTAATGGTACTGATACTTTGTGCATAAAATTATTCTGTATGTGCTTGTGCCTCATCGTATTGGGTTTGCATGGACCGGTTATGCTGCTTTCCTTCATATTGCATATTCTCAGCATTGGCCTTAAGGATTAAAATGTGATCTTATGATGCTGACTTGTAAGCCTTAAACTGgaacaaaataaatg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459148 lncRNA upstream 1274 15163384 ~ 15233645 (+) False c27h11orf88
TU459161 lncRNA upstream 16809 15215977 ~ 15218110 (+) True G387386
TU459157 lncRNA upstream 27022 15205754 ~ 15207897 (+) True G387383
TU459154 lncRNA upstream 30037 15182313 ~ 15204882 (+) False LOC113531625
TU459156 lncRNA upstream 30332 15182313 ~ 15204587 (+) False LOC113531625
TU459165 lncRNA downstream 18646 15261641 ~ 15274079 (+) False sik2a
TU459163 lncRNA downstream 23112 15266107 ~ 15269909 (+) True G387388
TU459288 lncRNA downstream 111555 15354550 ~ 15361017 (+) False zgc:193711
TU459304 lncRNA downstream 127567 15370562 ~ 15370773 (+) True G387504
TU459313 lncRNA downstream 147624 15390619 ~ 15390835 (+) True G387513
XM_026921448.2 mRNA upstream 1227 15226345 ~ 15233692 (+) True c27h11orf88
XM_026922535.2 mRNA upstream 96844 15097068 ~ 15138075 (+) True drd2b
XM_034300511.1 mRNA upstream 318421 14862358 ~ 14916498 (+) True arhgef12b
XM_026921636.2 mRNA upstream 374175 14858557 ~ 14860744 (+) True tlcd5b
XM_026922534.2 mRNA downstream 2010 15245005 ~ 15261736 (+) True sik2a
XM_034300939.1 mRNA downstream 4387 15247382 ~ 15261736 (+) False sik2a
XM_026921543.2 mRNA downstream 61608 15304603 ~ 15309671 (+) False gig2p
XM_034300759.1 mRNA downstream 62901 15305896 ~ 15309671 (+) True gig2p
XM_026922277.2 mRNA downstream 71112 15314107 ~ 15321357 (+) True si:dkey-71l1.1
TU457943 other upstream 1406771 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 1410864 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 3924066 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 4855254 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 5466883 9765740 ~ 9768036 (+) True G384178
XR_004577401.1 other downstream 118363 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 791828 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 905365 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 1303146 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 1412674 16655669 ~ 16657113 (+) True LOC113531241

Expression Profile