RNA id: XM_026921486.2


Basic Information

Item Value
RNA id XM_026921486.2
length 2403
RNA type mRNA
GC content 0.53
exon number 17
gene id nup88
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14748438 ~ 14756063 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCGCCCTGCGacgacacacatacacacaaggaAAAATGGCGACGCTGGCCGCGGACCGTTGGAGGGATGAGCTGCCTGGCCACGAAATATTCTGTAAACTACAAGAGAGCCGGATTTTGGAGCCACAGGGAACGAGCAGAAGGATAGTTAAAAACCTTACGTTTTGCCTGAATGGAGATTTGTTTGTGTGGGATAATGTAAAGAGCGTGTTTTATACAACAAACCTACGGCTGCTCAACTCTGAGCTTACTTCCCACACGGCGAAATACCAGACTTTGATGTGCATCAACCCACCACTATTTGAAGTGTGTCAGGTTCTGCTCAGTCCCACTCAGTATCATGTGGCTCTCATTGGTCAGCGTGGGGCAACAGTGCTGGAGTTACCCCAACGCTGGGGCAAGAAGTCAGAATTCGAAGGTGGACGCCTCGAGATCAACTGCAAGACGATTCCTGTGGCTGAGCGCTTCTTCACCAGCTCGACCTCCGTGACCCTGCGCCAAGCTGCTTGGTACCCCAGCGAGACGGAGGAGCCCCACCTAGTACTGCTCACCTCAGACAACACCATCAGGTTCTACAGTCTTAAGGAGCCCCAGACTCCAGCGCGAGTGCTTCCAGTGTCTCAGTCTGACGAGGAGAGCACCATCCACCCAAGAGGGCGCTCCTATGCAGCCTCTCTAGGCGAGATCGCGGTGGCGTTTGACTTTGGGCCGTTAGTCGACGCCCCTCGCCACCTCACCGGCACGCGGCTGAAGGAAGACCTGCTGGTTTACCCGTTATACATCCTCTACGGGAACGGAGAAACATTTCTGAGTTACACGTCTCTCACCTACGTtaatctgGGGAAGCTCCTGGGTCCTCTACCCATGTACCCTGCCGCGGAGGATAACTACGGCTACGACGCCTGCGCCGTGCTCTGTCTACCCTGCGTGCCCAACATCCTGGTGATCGCCACTGAAGCAGGAATCCTCTATCACTGCGTCGTGTTAGAggcagaggaggaagaggatggtGGAGCTGTGGAGAGGTGGTCCCGAGGATCAGAGACAGTGCCATCGCTCTATGTATTCGAGTGCGTAGAGCTGGAGCTCACTCTCAAACTGGCCGCTGGGGAAGAAGAGGACCCAACAGATTCGGACTTCACCTGCCCGATCCGATTACACGGAGaccCCCTGTGTCAGCACAGGTACCACTGTACACACGAGGCAGGCGTTCACAGTGTAGGACTCGCGTGGTTCAACAAACTCCACAAGTTCCTCCAGTCAGatGAGGAGGATAAGGACAGCCTGCAGGAACTGGCAGCTGAGCAGCGCTGCATAGTCGAGCACATCCTCTGCACCAAACCCCTCACAAGCAGtttaccAGCTCCTGTTCGTGGATTCTGGATCGTGTCCGATCTGTCTCTGGGTGCCACAATGATCTGCATCACCAGCTCTTACGAGTGTCTCCTGCTTCCTTTGCTTAGTTCTATACgtcctccctctcctcctctgttGTGTTCGCGGGTGGGAGTGGAGGAGGGGTCTGTAAGCTCCCCGCTGCGTGGACTGGCTCATGACTCGTTTGAGCAGCACATCAGGAACATACTGGCACGCAGCTCCACCAATCCGCTCATGCTCAGgtcagGGGATAAGGACTCCTCTACTCCCACTCCAGAGTGTCTGCAGCTACTGAGCAGAGCCACGCAGGTCTTTCGGGAGGAGTACATCCTCAAGCTGGACCTGGCCCGTGAGGAAATGCAGAAAAGGGTCAAACTGCTGACCAGCCAGAAGAACAAGCAGCTGGAGGACCTCACAATGTGCCGGGAGGAGAGAAAGAGCCTGAGGGAGGCAGCAGAGCGCCTGGCCGACAAGTACGAGGACGCTAAATATCGGCAGGAAGCCATTATGAACAGgaTGAAACATGTGCTGGGTAGCCTGCGCAGTCAGCTTCCAGTGCTGTCCGACAGCGAAAAGGACATGAAGAAAGAGCTGCAGACCATCAACGACCAGCTGCGACACCTCGGAAACAGCATCACACAGGTGAACATGAAGAAGGATTACCAGAAGAAGCAGATGGATAAAGGCTCGTCTTCAGCTCGAGCCACCATAACTCTAAATGCCCACCAGAGGAAGTGTGTTCAGGGCGTCTTAAAAGAACAGGGTGAACACATTGCTGACATGATGAAGCAGATCAAAGACATCAAGAACCATTTCAATTTCTGAAGAGCAGTAGTGAGAAGTAATCGCTGACCGCATACCACAAAGCACTATATTCAGCTCGCAGTGCCGAATTATCTTTGCAGCTTGTACAATGACTCTGAGGGTAAAAGATAAGCTCGACACGTTTGTATACAGTAGCTTTTATATGTTGTGTGTACAAGTGTAACAATCTGTTggaggaaataaaatgtttttgtacatttaa

Function

GO: NA

KEGG:

id description
K14318 NUP88; nuclear pore complex protein Nup88

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458889 lncRNA upstream 32383 14708856 ~ 14716055 (+) True G387160
XR_004577415.1 lncRNA upstream 564387 14152144 ~ 14184051 (+) False LOC117596237
TU458144 lncRNA upstream 573013 14170058 ~ 14175425 (+) True G386495
XR_004577416.1 lncRNA upstream 594296 14152144 ~ 14154142 (+) True LOC117596237
TU458138 lncRNA upstream 617811 14130171 ~ 14130627 (+) True G386490
TU458926 lncRNA downstream 78856 14834919 ~ 14924865 (+) True G387196
TU458927 lncRNA downstream 100205 14856268 ~ 14868701 (+) True G387197
TU458941 lncRNA downstream 178641 14934704 ~ 14936042 (+) True G387208
TU459148 lncRNA downstream 407321 15163384 ~ 15233645 (+) False c27h11orf88
TU459154 lncRNA downstream 426250 15182313 ~ 15204882 (+) False LOC113531625
XM_026921694.2 mRNA upstream 655083 14086642 ~ 14093355 (+) True rad51d
XM_026922387.2 mRNA upstream 859171 13876835 ~ 13889267 (+) True rcc1l
XM_034300462.1 mRNA upstream 873529 13870651 ~ 13874909 (+) False ncf1
XM_034300461.1 mRNA upstream 873531 13870651 ~ 13874907 (+) True ncf1
XM_026922443.2 mRNA upstream 937884 13806887 ~ 13810554 (+) True pex12
XM_026921634.2 mRNA downstream 36070 14792133 ~ 14795940 (+) True mis12
XM_026921630.2 mRNA downstream 55039 14811102 ~ 14855941 (+) False mcama
XM_026921632.2 mRNA downstream 55041 14811104 ~ 14855941 (+) True mcama
XM_026921631.2 mRNA downstream 55045 14811108 ~ 14855941 (+) False mcama
XM_026921633.2 mRNA downstream 55409 14811472 ~ 14855941 (+) False mcama
TU457943 other upstream 920290 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 924383 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 3437585 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 4368773 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 4980402 9765740 ~ 9768036 (+) True G384178
XR_004577401.1 other downstream 605295 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 1278760 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 1392297 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 1790078 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 1899606 16655669 ~ 16657113 (+) True LOC113531241

Expression Profile