RNA id: XM_026921495.2


Basic Information

Item Value
RNA id XM_026921495.2
length 5191
RNA type mRNA
GC content 0.48
exon number 22
gene id pkn3
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7412105 ~ 7434020 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGAAAGAAGGGAAAAACTTTCCAAAGTACCGGTAACAATGTGTCAGTCACTTGTAGCCTCCGTGTTTGAGAGGCAGCTGGTAGTTGTCATGTGTGGGCGAGATTTTCCACCGTGCTCCTTtcagttgaattgaatttaatttcgacatgttttgttttatttaagcaCGAATAAGTTAGTCAGGAGGACGGCTCCTCTTCAAGCTAGGTAACTTATTTGGCTAGTCATTCAACAAACAAACCGAAACCGCCTGCTTtgcttgacacacacacaagagagagagagagagagagagagagagatggcggGTGTAACACTTCAGAGCGGCTGCTTGCGGGGTCTGCCTGAGGGTGACCTGCTCGACCCGGTGTTCCAGCAGCGGCTAGAAGACGCCCGTGCCCTGCTCAGGCAAGAGATCCAGCGAGAACTGAAGATCAAGGAGGCAGCAGAGCGGCTGCGGCGCGCTGTCACCAACAAGAAGAGTGCCGCTGATGTGGAGGGTCAACTACGTGCCTCCACTCGCAAACTGGAGCAGCTTCACTGGGAACTTCAGGAGCTGAATGCACGCGCCAtggctacagagagagagaccaccCCAGATGCTGCCATTTCTCCAGACCCATGCCACTGGGAGGACTCCACATCTCCTCTGGGCAGTCGCATCCGCACCCTGAGGAAACAGCTCAACATGGAGTTGAAGGTGAAGCAAGGAGCCGAAAACATCATCCAGATGTATGCCAGCTGTTCAGTCAAGGACCGAAAGATGCTGTCCACAGCCCAGCAGATGCTGCAGGATAGTAGGACCAAAATCGAGCTGCTGCGCATGCAGATTGTTAAAGTGACTCAGGCCAGAGAGGGAGAGCGCGAGGCCTCAGAAACAGACGGTCGGCCTTCGGAGACCATCAGCCCCCTGGAGCTGAGGATGGAGGAGCTTCGGCATCACCTGAGGATTGAGGCTGCAGTGGCTGAAGGGGCCAAGAACGTGGTGAGGCAGCTTGGAGGCCGCAGAGTTCAAGACCGCCGTGCCCTGGCTGAGGCTCAAGCTCGTCTGCAGGAGTCCTCTCAGAAGCTGGATCTTCTGCGTCTGTCTCTGGAGCGGAGGCTCACGGAGCTTCCTCCAGACCACCCCAAACTGTCTGACATTAAAGAGGAGCTGACTGTGGGAACCTCACCCAACCTGGGCCTGCAGAGGAACCGCCAGCGCTCTTCATCATCTGCCTCCTCATCTTCATTCTTCAAACCCGCCAGTCTTACagGTCGGCTGGAAGTCAGATTAATGGGCTGTCAGGATCTGTTGGAATCTGTGCCAGGCCGCTGTCGTGTGGCTTGTGCTTCCTCCTCCCCCAGCAGCCCCTCTGAAGCCAAGTCCCTGAGAATGAGGACGGGCCTGTCCACACGCAGCACCAATGGCAAGATGGCCAAAACCGATGAACTGTCCACGGAAATCAGTGCAGTGTTGAAGGTGGACAACCGGATGGTGGGTCACACAAACTGGCGGCCTGTGGGCAAAGAAGCCTGGGACCAAAGCTTCAGCATCGAACTGGAGAGGTCTCGGGAGCTGGAGATCGGTGTGTATTGGCGAGATTGGAGAGCTTTGTGTGCTGTGAAGTTCCTGCGTCTGGAAGACTTTCTGGATAACCAGCGGCATGGCATGTGCCTTTACCTGGAACCACAAGGCACACTGTTCACTGAGGTGAGATTCATCAACCCTGTCATTGAGCGGCACCCGAAGCTACAGCGACAGAAGCGTATATTCCCTAAAGAGAaagGTAAAAACTTCTTACGGGCGGCACAGATGAACATGAACTTTGCCACGTGGGGCCGTCTGATGATGAGTGTGTTGCCACCGTGCAGCAGCACCATTACTGCTATGAGCCCCCCGCTGGCCTCCACTGACCTGCCCTCTCCACCTCCACCCCAAGAGCCTGATCTCACCTCCccccctgctgaaaaaaaaacttccacatccACCCCTCCTCCATCAGGAGACTCAGCAATCGTCAAACTAAACTTCAGTGAGGAGCGACCTCCCAAACCCCCTCGTCTCTACCTGGCAAAGGCAGACAGCCCTGCGTCCATAAACTTGAAGGGTAACCAAGCTGAAGATTGTCGAGGCAGAGCTGTGCTGCAGCCTATTCCTAAGCAAACACCTGAGCTGCAAATGGATGATTTCGTCTGTATCTCTGTCCTTGGTAGAGGCCACTTTGGAAAGGTGCTGCTAGCAGAGTATAAGAGCACAGGGAAGCTGTACGCCATCAAAGCCTTGAAGAAAGGGGATGTGGTGACACGTGATGAAGTAGACAGTCTGATGTGTGAGAAGAGGATTTTTGAGACCATTAATGCATCCAGACACCCATTTCTTGTCAACCTTCATGGCTGCTTCCAGACATGTGACCATGTGTGCTTTGTTATGGAGTATTCACCTGGAGGTGACCTGATGACCCACATACACACCAGCATCTTCACTGAACGCCAGACCCgATTTTATGCTGCCTGTGTACTCCTGGGTCTTGAGTTTCTGCACCTGAACAAAATTGTTTACCGGGACCTGAAACTGGACAATCTTTTGATGGATGCTGATGGCTTTGTTAGAATAGCAGATTTTGGGCTTTGTAAAGAAGGTATGGGGCACGGTGACCGAACATCCACCTTCTGTGGAACTCCAGAATTCTTGGCCCCTGAGGTTTTGACAGACAGCACGTACACCCGCGCTGTGGACTGGTGGGGCCTCGGCGTGCTCATCTATGAGATGCTAGTGGGAGAGTCTCCATTCCCAGGTGATGACGAGGAGGAAGTGTTTGACAGCATAGTGAACGACGAAGTGCGTTACCCCAGGTTTCTCTCCCCAGAGTCAGTCTCTATCATTCAGAAGCTGCTGCAGAAAAACCCAGAAAAACGGCTTGGTGCTGGAGAGCAGGACGCTAACGAGGTGAAAAGGCACAGGTTTTTTCAGGGAGTGGACTGGGAAGCCTTGCTAGCCAAGCGAGTGAAGCCTCCGTTCCTGCCGAGCATCAAAGCCCCGGGTGATGTGAGCAACTTTGACGAGGAGTTCACACGCCTAAAGCCTGTGCTtacccctccacacacaccctTCTTCCTCACAGCTGAGCAGCAGGAGATCTTCGCAGATTTCGATTTCTCCTCGCTTCACTGACTGCCTGAGACTTGATGGACAAGCGGAACGCGACGCATCGAGGCTCTGTCCTAATCCTGCCTGagctctttcttttctttttctctctacctATGCAGTTGAACCAAGTGAAGCTGATTCACTGTCACAAGGCTGTGTGCTTTTCTGCTACTGGCTGCACTAGTGTGCTTGAGCTACATCTGAGTTTCTTCTGATGAAGGAAAGCAGCAGCTGCAGTGTTACTGTAACTCTCTGCTGTTCTGCCTCCAAAAGGAAAGAGAACCTGTCATCACTGTGAGCTAAGCTTTTTCCTGTCCTGCAATGCGTTGCTACTGATTGCCTTTGAGTGTGTGCGCTTGGGTACCTGCTATTATAGTAGAAGAACCATGCTGAATGTAATTTTCACTATTTTACTTTTAGCCTCCACAAAGCACTGGTGTaactgcaggttttcattctagTCAGTttggagccacacctgattacACCTGTTTAATCAGGTGATCCTGATCATGAGTCAGCTGTTAGGTGTGGATCCTTCTTGGTTGGTAGGAAAACCTGAGCTCTAGAGTCTTGTACTCTCTGCACACATAATGGCAGTTTTGTTAAAATGAAGCCACCAGTCATTGCTTGTTACATTTATCCTTTTTCAGATTCTTTATAGATCGTGCAGTTAGTGTAGTCAGAGGTCTTCCAGCTTAAAGCTGTAGAGCTTTGACGCACTCTTGCGCTGAAGCTGAgtagaaaatgaaatgttggtcatgtatgtatttatgtatgtatttatgtatgtatcaTTTTTAAGGATTTACACCTGAAGGAAGCTTTGTATGTATAAGCATAGGGGTTGGAAACAGCTATGACGaccaaatgcttcaaaaagGTAAATGGAATCTAACCTCCTCTCTATCCATTGCATCTGCAGTGTATGTGAGATTTACCACAGACAACACATTTTTCTATACTCATTACTTTAAATTGCCAGCAGAGTGACGTAGTGGGTAGCGTTGCCTCCACACAGGTATGCAGGAaggtggattagctatgctaaaATGGTGTGTTTCTGGGCTTagctccagatccacagcaaccctgaccaggatgaagcaggTACTGAAGCTGAATACCTTACAATGGAAGTCTCAGGACAGCTGTTGAATCCTGAACATCTGtctaacaataatttaaaactcTGAAAATGATCGTTGAAAGGATTAATTATACTGACGTAGAACTTCATTTCCAAATACCCTTGACTGAAGTTGCATGAAAGCGTTCTACATGTcgcataaatatttattgacagaattcaacaactgccgAGACTTTTGAGTAAAtggtttttctgttttctcagcaCTGGTAACCTCAAAATTCTTGTCTAGTAATGTTGCACACATGCTACAGATGGTGGATGTGAACACACAGCAACTGTATTGAATTCAGAATCTTGTATGCACTCACACATCCTGATCATCATGAGGTTTAAAGGTACAataagttgttttgttttttcttgttagCTGGCACTACTTGCTCACTGGAATCCAAAGTAACCTACATACTTTTCCAGACCACAGTTTAAATAATCACATGACTGTTATAACACtccaaaatatatatagtacttaatatttcattaagcaaattttatatattgtacCTTTAGGCCAATTAAATCTAATTATGTTCAGTCCATTGactcagcatggtgtgtgtgtataagagcaTTTACAATCTAGCTATGTTTATTTTAAGCCGCTAATGTGTTTGTGGCCTCTCTGCTCTGAAACGAGCCGTGTATCATGCTGTATTCTAAACTGTAAACATCCTGTAGTGtatttgttcatatttgcattacatttttGCTGTTAGCCACTATGATGTGGAGTTCTGAAGTAACGGTTTACTACTGAACAGTGATACTGTGAGCAGAAACACTAAAGTATTTAAATGGGACTTTCCCTTTATACATGccaaatgaaggaaaaaaaaaaaaatccaaacataaTGGAAGGGGATGAAAGtattttcacaaataaaatacaatatgacTA

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007165 signal transduction biological_process
GO:0005524 ATP binding molecular_function
GO:0004674 protein serine/threonine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453677 lncRNA upstream 23869 7386510 ~ 7388236 (+) True G382646
TU453653 lncRNA upstream 151015 7260253 ~ 7261090 (+) True LOC113531088
XR_004577398.1 lncRNA upstream 254876 7154594 ~ 7157229 (+) True LOC117596228
XR_004577397.1 lncRNA upstream 254876 7154594 ~ 7157229 (+) False LOC117596228
TU453632 lncRNA upstream 302396 7108726 ~ 7109709 (+) True G382606
TU453699 lncRNA downstream 14891 7448911 ~ 7450445 (+) True G382667
TU453724 lncRNA downstream 63746 7497766 ~ 7500585 (+) True G382686
TU453732 lncRNA downstream 104394 7538414 ~ 7544086 (+) False dpm2
TU454007 lncRNA downstream 212116 7646136 ~ 7646471 (+) True G382929
TU454009 lncRNA downstream 215289 7649309 ~ 7649523 (+) True G382931
XM_026921954.2 mRNA upstream 28721 7295229 ~ 7383384 (+) True cita
XM_026921957.2 mRNA upstream 28721 7295229 ~ 7383384 (+) False cita
XM_026921956.2 mRNA upstream 28721 7295229 ~ 7383384 (+) False cita
XM_026921958.2 mRNA upstream 28721 7295229 ~ 7383384 (+) False cita
XM_026921959.2 mRNA upstream 30267 7295229 ~ 7381838 (+) False cita
XM_026921584.2 mRNA downstream 53796 7487816 ~ 7536970 (+) True fam102ab
XM_026921585.2 mRNA downstream 53807 7487827 ~ 7536970 (+) False fam102ab
XM_026921586.2 mRNA downstream 54625 7488645 ~ 7536970 (+) False fam102ab
XM_026922257.2 mRNA downstream 104338 7538358 ~ 7544114 (+) True dpm2
XM_026921559.2 mRNA downstream 112440 7546460 ~ 7563680 (+) False pip5kl1
XR_003403275.1 other upstream 134378 7277599 ~ 7277727 (+) True LOC113531673
XR_003403276.1 other upstream 135132 7276845 ~ 7276973 (+) True LOC113531674
XR_004577432.1 other upstream 353906 6962210 ~ 7058199 (+) False LOC113531592
TU452818 other upstream 1028445 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 1169408 6223168 ~ 6242697 (+) True G381893
TU454294 other downstream 708591 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 748371 8182391 ~ 8213107 (+) True G383217
TU454617 other downstream 1156347 8590367 ~ 8591155 (+) False gig2o
TU454806 other downstream 1330882 8764902 ~ 8775134 (+) True G383625
XR_003403287.2 other downstream 1934469 9368489 ~ 9368564 (+) True LOC113531685

Expression Profile