RNA id: XM_026921561.2


Basic Information

Item Value
RNA id XM_026921561.2
length 2596
RNA type mRNA
GC content 0.43
exon number 11
gene id pip5kl1
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7546460 ~ 7563680 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GATTGTTAGGAAATGTCCATGTTTATGCTGAGCTGTATGTTCATTCTGAACGCGCTCCTTCTTTCAGTCGAgtttgctaacaaaaaaaataaacaaataaaaagatttgTCTGCTGTATTCCGACAACGCTGTCAGGAAAGATAAGATGGAGATGGCAGGgccgagcagcagcagcagcagcatgcgGGTGGTCAAGAGGAAGTTCTGGGGAGGCCTGCGGCAGCGCTGGAAGCTCCTGGGTGTGTTTGAAATCGACCAGCAGCATGAGTTCTACTCACTCACCTGCATGATGAAGGAAGGCCTGGCTGGTGCTGTGCAGAACACCATCGACAACCCAATACCTAACGAACTCTCTGAAGATGATTACCGACTTGAGGTGACACAAATCCATAAGGACTTTAGGATGGAGACGTTTGCAGGGCCGGTGTTTGCCAGCCTGCGGCGCTCTCTGGGGATGACAGAGAAAGAGTATCAGCATTCTCTCTCCTCTGAAGGCTGCTACCTGCAATTCATCAGCAATTCAAAGAGCAAAGCAGATTTCTTCCTAACGAATGATAAACGGTTCTTCCTGAAGACACAGAACAGAAGGGAGATTCGATTCCTCCTATCTCATCTAAAGCATTACATGGAGCATCTGGAGAAGTACCCCCATTCTCTCCTGGTTAAGTTTTTAGGTGTTCACAGCATCAAGATCGCCCATCGGAGGAAGtACTTTATAGTGATGCAAAGTGTCTTCTATCCTGATGAAAGAATATGTGCCAGATATGATATAAAGGGCTGTGAAGTGAGCCGGTGGACGGACCCAGCACCTGAGGGGAGTCAGGTCATCGTTGTTCTCAAGGATCTCAATTTTGAGGGAAAACATATCACATTAGACCAACAGCGGCCCTGGCTGTTACGTCAGGTGCAAATCGACACATCCTTCCTGCGAACACTGAATGTACTGGACTACAGCCTCCTGCTGGCTCATCAGCCCCTGCACCAGGACGAGCGTCACCCCAGCCTGTCCTTCGCCACCCTCATCATGCGCACCAAGAAATCCCTCACTTTGCCCTCCACAAGGCCAGTGGCAGGCAGGTCAGTGAACACATGCTCCCTTGCTGCTGTCCCAGGAGTGGTGCCTGAGGAAGACTCAACCATCCAAGCCACAGAACTGGATTCAGGGACGTCACAGTGGCAGATCACAGAGACGTCTCAGGCAGAATTTGGAGAACAGAGCGACGGGGCCTCTAAGGTTGGATCAGAATCGGCTGAACTGCTGGAGTTTCAGGCCCAGAATCGGCGGCTGCTGCCTAACTTCAAAAACCCGATTCACGTAATAGACGGGCCAGAGCAGCGCTATTTCATCGGCATCATTGACATCTTCACTGTTTATGGCTTCAAGAAGAGACTTGAGCACCTGTGGAAGAGGCTGAGACATCCTGGACAAAGTTTCTCTACTGTCAGCCCTCCTGCCTACTGTCTGAGACTGTGCCAGTGGGTACAGGACCATACCAAGTAGCCTACGACTGGGGGGGGATCAGTAATGACTGGAAAATGAGCAAATGTGCTGAAAAACATGCTGGAGATACACACAGATGGTCATACTTAAGCCAAAAGAATGAATTTTGCTCTGGCAAATAAGAGCACCTATGTGTGTTGGCTAGCATGTAGCCACAATGCTAACATAAGCCCTTACTACTAAGAGTTTTGGTTTAAATATAACAGGACTACAAGCACTACAATCCTGTCACAAAGAAACCTGAGTAATTCTGTCAGTTCTATGATTATAATGAAGTTGAAGTTGATACAAAGTTGTAACTTAATTCTTGAAAaggttttattataaaattcttttaaaaaagttttttttttttaaattttaagtcCTAAAAGTATAATATAGAGTCATAGATCATACAGAAATGTTAAGTAACAAAATTGATCTGTGAAAGTATACCTTACTGTGCTAACATTGTGGCTATATCTGGACATCAGTGAATCGGTCAGTGTAAGAAGTGTAGTGATGAATGTTGGCgggtttttcttctcttctgaaATGTCAAACAGCTACAAAACTCCAAAGAGACGACGCATCCAGCTGCAGCATCCATTTTCCAAAgtcatgcaaaagagaaaactTTAAAACTATACAGAAATAGACCTGATACGCAGTAAAAGAATAAGCATTTTCAGCTCTGTTTCAgttctttctcatttttatgATAACAGCTTATATGCAAAATACAATAGAACTGAAACCATCTTTGcttttattatgcattttgcGTATATGACTTGAAATGAACAGTAAATCCTGTGATATGAATGTTTACCAAAATTATATTTGAGTCAACTCAGCTGCGTAAGATCACAGAATGTTATGTAACACAGTTCTGATATTATTGAAATCATATCAAGGTTCAACTCAAAACtttgcaagaagaaaaaagattataaacatGATGACGCTAACACAGTGCTAGCACTGTTATTTCAGGTATGTATTAAAATTGTGTAATCGTGtttgtgcgtgcatgtgtgcatatttgtgtgtatgagatcacaatttcacatttcatagcttatatatatatatgaatattatcTATACAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453732 lncRNA upstream 2998 7538414 ~ 7544086 (+) False dpm2
TU453724 lncRNA upstream 46499 7497766 ~ 7500585 (+) True G382686
TU453699 lncRNA upstream 96639 7448911 ~ 7450445 (+) True G382667
TU453677 lncRNA upstream 158848 7386510 ~ 7388236 (+) True G382646
TU453653 lncRNA upstream 285994 7260253 ~ 7261090 (+) True LOC113531088
TU454007 lncRNA downstream 82456 7646136 ~ 7646471 (+) True G382929
TU454009 lncRNA downstream 85629 7649309 ~ 7649523 (+) True G382931
TU454010 lncRNA downstream 85941 7649621 ~ 7650073 (+) True G382932
TU454022 lncRNA downstream 99187 7662867 ~ 7665688 (+) True G382942
TU454164 lncRNA downstream 341654 7905334 ~ 7909226 (+) True G383067
XM_026922257.2 mRNA upstream 2970 7538358 ~ 7544114 (+) True dpm2
XM_026921584.2 mRNA upstream 10114 7487816 ~ 7536970 (+) True fam102ab
XM_026921585.2 mRNA upstream 10114 7487827 ~ 7536970 (+) False fam102ab
XM_026921586.2 mRNA upstream 10114 7488645 ~ 7536970 (+) False fam102ab
XM_026921497.2 mRNA upstream 113064 7418272 ~ 7434020 (+) True pkn3
XM_026921867.2 mRNA downstream 2107 7565787 ~ 7603329 (+) True sh3glb2b
XM_026921870.2 mRNA downstream 2107 7565787 ~ 7603329 (+) False sh3glb2b
XM_026921869.2 mRNA downstream 2108 7565788 ~ 7603329 (+) False sh3glb2b
XM_026921872.2 mRNA downstream 2108 7565788 ~ 7603329 (+) False sh3glb2b
XM_026921873.2 mRNA downstream 2109 7565789 ~ 7603329 (+) False sh3glb2b
XR_003403275.1 other upstream 269357 7277599 ~ 7277727 (+) True LOC113531673
XR_003403276.1 other upstream 270111 7276845 ~ 7276973 (+) True LOC113531674
XR_004577432.1 other upstream 488885 6962210 ~ 7058199 (+) False LOC113531592
TU452818 other upstream 1163424 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 1304387 6223168 ~ 6242697 (+) True G381893
TU454294 other downstream 578931 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 618711 8182391 ~ 8213107 (+) True G383217
TU454617 other downstream 1026687 8590367 ~ 8591155 (+) False gig2o
TU454806 other downstream 1201222 8764902 ~ 8775134 (+) True G383625
XR_003403287.2 other downstream 1804809 9368489 ~ 9368564 (+) True LOC113531685

Expression Profile