RNA id: XM_026921571.2


Basic Information

Item Value
RNA id XM_026921571.2
length 1735
RNA type mRNA
GC content 0.44
exon number 4
gene id ntmt1
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9980300 ~ 9987628 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cataaatacacactacacatctcaaCCATTTTGTCAACAGCAGTCAGTTAAAGGAGTAGCCTAGAAAGTACTGAAATACGTTTCTGAAGATTTCCTGGACTGGTGGCCTTGAATATCACAGAAACTCTATTATAaagtgcagagaggatggaggaccACCTGATTGAAAATGAGACCTCCTTTTACTTGAAGGCGGAGCAGTACTGGAAGGACATCCCGCCCACTGTGGACGGAATGCTTGGAGGTTATGGTAGCATTTCCAGCATCGACATCAACGGTTCCAAAAAGTTCCTGCAGAAATTCCTTGGGGAGGGCAAAGGTAAGACGAGACCAGGCTGTGCCCTGGACTGTGGCGCAGGAATCGGCCGCATCACCAAGCGTCTTCTCTTGCCACTCTTCCGTACCGTGGACTTGGTAGACGTGACGCAAGAGTTCCTGGACAAAGCACGCTCTTACCTGGGTGAGGAGGGCAAGAGAGTGGAGAACTACTTCTGCTGCGGTCTGCAGGATTTCCAGCCTCAGCCGGATCATTACGACGTCATCTGGATCCAGTGGGTCATTGGTCACCTGACTGATGATCATCTAGTGGAGTTCCTCAGGCGATGCCGCAGTGCCCTGCATCCTGATGGCTTGATCGTGATAAAGGATAACGTGGCATACGAGGGCGTCGTGCCTGATGAGGTGGACAGCAGTGTGTGCAGAGACCTGCCCTTATTGCGCCGCATAGTGGCCAGAGCTGGACTCAGCATCATCTGTGAGGAACAGCAGCAGAACTTCCCTGAGGAGATCTACCAGGTCCACATACTAGCTCTTAGATAGGAGATGCCTACATACGTACATAAGGCAACGTTTTATGAGCAAGAAACTGTATAAATCATATTAACTCCACACACGGTTGTTTTTTCCTGCCATTGTTAATGAGGCACCAGGTTGGAACATTGCAAAAAGATCACTATTTGCCTGTATTAAGGGTCTGCGGTTTTAAGGAAGGCAGTTTTCAAGGTCTGATTTGCACCCAGACCCCTGGACTATCGCTATCAGGGAGCACAGATTTCATATGATAGTATAATAGTTAgccattttacacttttaagaTATCTAAATGTCCTCTCGTCTGTAGTTAATCACCGGATGTTTTTGGAGGACAGAATatatgtaaacaaaacatgtttGTGCTTTCAGGGGAATAAGATTTGATATTTGAGCCAACCTGAATTTTGACCCAAACTGTTTGTGTGAGATTAATGTGTCTAGTTTGTGCTTAAGTTATTAAGAGACATATTCATGTGTGCATGTATTGTTTGTTATGGGTGACTGTGgacttaaatatataaatagctttatataaaatattgttgTACTGTGTATTTTATGCTCCTAAGCCCCGCAAAAGTagtatggttaaaaaaaaaattcttgctGGCCAGACTTTGAACATTCACTACACCATTAATTATCATGACTAAGAAAGAGGCAGTTTGACTGGCGTGGCTGATGACCAGCCACAGACCTTTTCTTGTAGCCAAACAGCAGATTATCTCATTTACTCATAACCGACTGCCCAAACAAAACTCTTTAAGAACTTTTAGACTGAATTTGGGAAAGCTCAGTGTCGCTGTGTTCAGGTTTGTTTGCCCATTGAAAACTGCTACATGATAGTGTGTAAACTCAGTAAATCAGACTGCAGCATTTTAATGATTCTGAATcgtgtggccagaaaagtgtaataAAGATC

Function

GO:

id name namespace
GO:0035572 N-terminal peptidyl-serine dimethylation biological_process
GO:0035573 N-terminal peptidyl-serine trimethylation biological_process
GO:0007051 spindle organization biological_process
GO:0007059 chromosome segregation biological_process
GO:0018016 N-terminal peptidyl-proline dimethylation biological_process
GO:0005634 nucleus cellular_component
GO:0008276 protein methyltransferase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455519 lncRNA upstream 148125 9835704 ~ 9835912 (+) True G384212
TU455504 lncRNA upstream 170346 9813485 ~ 9813691 (+) True G384197
TU455496 lncRNA upstream 179033 9804582 ~ 9805004 (+) True G384189
TU455490 lncRNA upstream 189178 9794083 ~ 9794859 (+) True G384183
TU455489 lncRNA upstream 192126 9791144 ~ 9791911 (+) True G384182
TU455790 lncRNA downstream 134905 10122533 ~ 10122886 (+) True G384459
TU455792 lncRNA downstream 140143 10127771 ~ 10127971 (+) True G384461
TU455799 lncRNA downstream 141615 10129243 ~ 10129531 (+) True G384466
TU455967 lncRNA downstream 319046 10306674 ~ 10306908 (+) True G384583
TU456005 lncRNA downstream 370031 10357659 ~ 10358263 (+) True G384606
XM_026921891.2 mRNA upstream 222199 9743409 ~ 9761838 (+) False ptpa
XM_026921893.2 mRNA upstream 222199 9743409 ~ 9761838 (+) False ptpa
XM_026921894.2 mRNA upstream 222199 9743456 ~ 9761838 (+) False ptpa
XM_034300599.1 mRNA upstream 222199 9743758 ~ 9761838 (+) True ptpa
XM_034300524.1 mRNA upstream 276922 9687802 ~ 9707115 (+) False lrsam1
XM_026922347.2 mRNA downstream 17368 10004996 ~ 10042974 (+) True gpr107
XM_034300715.1 mRNA downstream 66165 10053793 ~ 10092897 (+) False ncs1a
XM_026922103.2 mRNA downstream 66167 10053795 ~ 10094807 (+) True ncs1a
XM_034300856.1 mRNA downstream 114725 10102353 ~ 10113155 (+) False fbxw2
XM_034300854.1 mRNA downstream 114856 10102484 ~ 10113155 (+) True fbxw2
TU455483 other upstream 216001 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 612507 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 612900 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 614709 9369261 ~ 9369328 (+) True LOC113531687
XR_003403288.1 other upstream 615134 9368831 ~ 9368903 (+) True LOC113531686
TU455978 other downstream 390585 10378213 ~ 10379665 (+) True G384593
XR_003403209.2 other downstream 1310352 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 3834160 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 3838222 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 5373730 15361358 ~ 15367247 (+) True fkbp6

Expression Profile