RNA id: XM_026921577.2


Basic Information

Item Value
RNA id XM_026921577.2
length 1598
RNA type mRNA
GC content 0.43
exon number 4
gene id pole3
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9677303 ~ 9681436 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGACGTTATGTCTGACACGGGAAAGGTCAAAGGTGAAACTCGTGGTTTGGATGTTTAGCGGGCTCCAAAACAAACTCGGTTGCTAGTTTTTTCCCCTCCACCTAATGTCTGAAAGGACCACATCCACTGCATGTAACCAGGTTTGACTGGGACATTTGGTTTCGTTTTAAATACCGTCTTATCGCTAAAGAAGTCTTTCGCTTCCGGTTTGTTATCTGATATAGATACATTTGCTGTAGTTGGTTAGCGGCTAACAGTTAGCTGCCTGCTTTTCCCGGGTTAGTGTTCCGTTTTGCTCCTCAGTCAGCTGTAGAATAAAACtgcactcactacacactgttATAACAAACCTTTTTAAACACCCGCGGGTTTATTCTGTAATACTAAGCCAGGCATTATAGTGAAGGTGAAGTTCCCTCGCTAATTTGGCTAACATACAGCTAGCTGAGCTAAGTCGGTGTAGTAGTAATGGCGGAGAGACCTGAGGACCTGAACCTGCCCAACGCTGTCATCACCCGCATTATCAAAGAGGCTTTACCAGATGGTGTAAATGTGTCCAAAGAGGCAAGAAGAGCCATATCTCAAGCAGCCAGTGTATTTGTTCTGTATGCTACATCATGTGCCAACAGTTTTGCCATGAAAGCCAAAAGGAAGACTCTAAACGCCGGGGATGTGATGTCTGCTATGGAGGAGATGGAGTTTGAGCGATTCTTGCCACCTCTGCGCGAGGCTCTTGAGGCCTACAAAAAGGGccagaaggggaaaaaagaggcaTCTGAACAGAAACGTAAGGATAAAGAGAAGAAGAATGGCACAGAAGAAAATGACAAGggcagagaggaagaggaggatgaagaagagCACATAGAGGATGAGCAGGATGGAGAGAAcgagggagaggaggaagatGTGGAGAATTGAGGGAGAATGGCAGAAGTTCAGCACCATTTTCTACCCACCCTGGTTCCTAAAGACACTCTAGTTGTGTGTCCACTGTGAGAAGAAAAGGGAGAGAATACAAACAGCCAGCACTTGATCtctatgaaaaaataaaattaggcACCGAGGATTAAAAGATACTTGAATGATGGCTTTGTTCCCATCTCTACCGTTTATGAGAAGTGTTTATGTTCCAGGTTCATGTTGTACTTGTCTTCTCAGTAGCAGTATACTTGGTATCTTCACCTGCATGGTTTAGAAATGAAATTTGACCATATTAGTGTACCTGTAGCTTAAACAGACTGAGCGCGAGGCTGTGCGTACATTCTGAAAAGTCGGATTGTCTCTTTTTGTGGAATTGATGTCTGCAGGTGAAGTTGTATTGTTAAAAAGTCATCCACATCTTTTGGTGCTTCATCTTGGAATAAATTGTACAGGAAAGTCTGGCAGCACATTGTAAAATTCAGGGAATGTGGAAAATGCATTGTTGAAACAGAGACAGGGATGTTTTTGATAGTTTCCTCACATCTGGGTCAGGGCTTTGCTGGTATCAGGCCTTGATACATGTTTTAACTTTCAAATAAATTTGTACTTTTGTAGGACTCAGTCAGCCCACCCTGAACTGGTTTTCATATTAAAGggttttttgtgtaaatatc

Function

GO:

id name namespace
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0046982 protein heterodimerization activity molecular_function

KEGG:

id description
K02326 POLE3; DNA polymerase epsilon subunit 3

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455422 lncRNA upstream 115929 9561135 ~ 9561374 (+) True G384134
TU455412 lncRNA upstream 150785 9526311 ~ 9526518 (+) True G384125
TU455393 lncRNA upstream 190636 9486462 ~ 9486667 (+) True G384106
XR_004577435.1 lncRNA upstream 221051 9454045 ~ 9456252 (+) True LOC117596253
TU455199 lncRNA upstream 222714 9372166 ~ 9454589 (+) True G383971
TU455437 lncRNA downstream 877 9682313 ~ 9686604 (+) True G384144
TU455438 lncRNA downstream 877 9682313 ~ 9686604 (+) False G384144
TU455439 lncRNA downstream 877 9682313 ~ 9686604 (+) False G384144
TU455489 lncRNA downstream 109708 9791144 ~ 9791911 (+) True G384182
TU455490 lncRNA downstream 112647 9794083 ~ 9794859 (+) True G384183
XM_026922139.2 mRNA upstream 102633 9571957 ~ 9574670 (+) True zgc:55461
XM_034300877.1 mRNA upstream 119408 9540561 ~ 9557895 (+) True glipr2
XM_034300878.1 mRNA upstream 119408 9556046 ~ 9557895 (+) False glipr2
XM_026921492.2 mRNA upstream 176314 9487839 ~ 9500989 (+) False LOC113531033
XM_034300457.1 mRNA upstream 176314 9487842 ~ 9500989 (+) True LOC113531033
XM_034300525.1 mRNA downstream 5603 9687039 ~ 9707115 (+) False lrsam1
XM_026922092.2 mRNA downstream 6354 9687790 ~ 9707115 (+) True lrsam1
XM_034300523.1 mRNA downstream 6354 9687790 ~ 9707115 (+) False lrsam1
XM_034300524.1 mRNA downstream 6366 9687802 ~ 9707115 (+) False lrsam1
XM_026921891.2 mRNA downstream 61973 9743409 ~ 9761838 (+) False ptpa
XR_003403285.1 other upstream 305773 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 306166 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 307975 9369261 ~ 9369328 (+) True LOC113531687
XR_003403288.1 other upstream 308400 9368831 ~ 9368903 (+) True LOC113531686
XR_003403287.2 other upstream 308739 9368489 ~ 9368564 (+) True LOC113531685
TU455483 other downstream 84304 9765740 ~ 9768036 (+) True G384178
TU455978 other downstream 696777 10378213 ~ 10379665 (+) True G384593
XR_003403209.2 other downstream 1616544 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 4140352 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 4144414 13825850 ~ 13828148 (+) True G386325

Expression Profile