RNA id: XM_026921586.2


Basic Information

Item Value
RNA id XM_026921586.2
length 5750
RNA type mRNA
GC content 0.39
exon number 11
gene id fam102ab
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7487816 ~ 7536970 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAGAGCTGACGGCTGTGCCGTTTATCAACGGGATGCTCTTCTGCAAAATCCGGCTTTTGGAAGGGGGAGACTTTGTCATGTGTTCATCTAGCAAGAGGTGCAGGAGAACTGTGTTCGCTGGCGAAAGAAGTTCTCCTTCGTGTGCAAGATGAGTGCTAATCCTACGACGGGGGTGCTGGACCCCTGCATCTGCCGAGTGTCTGTGCGAAAGGAACTGAAGGGCGGAAAGTCTTTCTCAAAGCTGGGCTTTGCTGACCTCAACATGGCGGAGTTTGCGGGTTCAGGCTCCACCGTGCGCTGCTGTATCCTGGAGGGCTACGACACCAAGAACACTCGGCAGGACAACTCCATTCTGAAGGTCACTATTGGGATGACTCTTCTCTCCGGGGATCCTTGCTTTAAAACGCCTCCAAGTACAGCTAAAAACACAGCACTCGCTGGTCAGGACCCGTCTCTACAGCTGGACTGTAAGGGAGAGGGCACTGGCAATAACCCGACTCCACCCACAGGCATCAGCCCGGGAATCAGCTCCAGCCGCACACACAAACCCAGAACCTCTATGCCCTGCTCAGGTCTGCCAGAAATGTTAGACGAGAACCTCTCACCAGAAGAGGTGTTTCACACAGGCCACTCGAGGAATTCCAGCTATGCCAGCCAACAGAGCAAAGTTTCAGGCTACAGCACAGAGCACTCGGGCTCGTCCAGCCTGACAGACCTGAGCCAGCACCGGAGGAACACATccaccagcagcagcaatgCTTCAGCCGGGACCACCACGGCTACTGAAAGCCCAGCAGAGCCGGACAAAGAGCCGGTGAAACCCGAGAAGCCTCCTCGCCCCCCGAGGCCTGCCATACTCACTAACCGACCTTCTAGGAGAAAGAAGGACTCTGTGGAGAACCACCCCACCTGGGTGGATGACACGCGCATCGACGCTGATGACATCGTGGAGAAGATCGTCCAGAGTCAGGACTTTGCTGATGTCAGCAACAATGAGGATAGCAATTTGCAACTGTTTGTCAGTCGGGATGGTACCACTGCTCTTAGCGGCATCCAGCTGGGCAACAGGGTGTCAGCGGGGGTGTTTGAGCCTGTCGTGATTGAGAGTCATTAGTGGTATCAGTCACACTCCTCCTGAAATACGAAAGATGGCCAAAATAAGTGAGGATGACAGAGAAGACAGAGGGGAAGTCCAGCATCGCACTAGCAAGATGTTTTGCTACTTACATTCTTTTTATTGTCTTCACCGATCAGTTTATTCACATGCTATGATGATAACACCGAAAATCCTACATTGTATTATACGCAAACGGTGGTGggtggttttattattattattattattattattattattattattatcattattattattattattattattattagccacGTAATCAGAAAGATGTGTTACTGACACCCTATTTGCAAGTAAACAAACTACTTGAAATACCTGAAGTAGTCGCACACTGTGAAAAACTGTCTTTGGCCTAGGAAACATCGTATTTATGGCCTAAACGGCAGCCCTTAGGATTTTTAAGTAGTAATACGATTCATATTTGGTTAGCCTTTCCGATATTATTTAATGGTTCCGATCTGTGTTTTCCTTCTTCCAGATTTGTTTTTCTGAACATTTGTTTTGCCTGCGTTACAGACCACTAAAACGTGTTCAGAGTCTTAGCATTTATATTCTGCTTTACTTAACCACTAccttttaaaaaggaaaattccttttttttttttttttaaataaagaaaactgcATGTTTAGCAgtggtttaaaacattttttttcttgattgcATGCTTTTAAAGTAAGatatattacattaattacCCACTGAAGGTTTCCACAGGGCATAAAACCCTTTAGTTTCAGATGGTTTCAGATTTTTGTGTGTCCACTATTATATCAGTGAATATTTTAACATACTTACTGAATATTTAAACCTAAAATCCTGATCTATGAGATTAATAACTTGTGTTTTCGGTGTACTGGCTTAAACAGACACCTGAATTATGGGTCAAACATTTGGATATCTTTCGATTATATACGTAGTGTACGTCTCTGGCAAATTTCTCAGTATTTTTATACACCACTTTCTCCAGATTCAGTAAGGGAAGTGTTCAGAGTGAAATGTAAATTCAGTGCCAAAATCTATATTTAGCACCgatatttaaatttttgacTCATTACTAACGCAGTAGGCAAGACACCTGAAACTGCACCTTTCTGCTTTTTCGGATAAAGTAGCTCTTAGAGTAAACCTGAGTAAAATTCACCCAGcagaaaagccaattcactgaaggggaaaggacagaATATAAGAGTATTTATAATTTGTTGCTAGTAACGGTTACTTTCGCTTTGTGTTGACTTCATCTGTTTGAaatttgacctgtgaatttatgagcctcaatttttttttttccaatttcttTAAATTGAAATAGGAGCGCAGGAACATGGGAACATGTGACCATCTTGGGTGTAACTCAATTCACTGTTCTTGCTAGATAGATCAGTTGTCTTGCAAGTTTACACACTGAGCATGTATAGAAAAGCATCATAACCAGCGTAGTAGGAATGTCTTTATCAGGTCTTAAACGAATCATTAGATATAATAACTTTTCGAAAATATTGCGTCGCTAAAACAAGTTTTCACTTTAAAGACAGATTTGCTGGTTTTTATGCCCTGTGGAAGCCTTTGTGGGTGAtttttgtgcaatattttacTTGAAGAAAATCATCCAAATTGTTTTGAACCATTGCAGAGTATTCATAAAATATGGTTTTGCTATTAGTTGGAATTTTCAAACCATATGACAAAAAGATGAATAGACACATAGAGGTGTATGGCTGGCCATACCAAAACATATCAGATTCAGGTTAACAAGCTTCTAGCCATTCCTCCATAGATTACGGCCttctgacatgtttttgttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgcgtgtatgtgtgttgggGTATTAGAGCTTTCATACTCGTGACTCATATGTTCTCCAGCTGGCCTGGGGAATCCCACTAAAGGTCAGATTTCTTCATATCCAtactctccatctccatcagcATACACACTCATCCAGCTCTTCTTCGCTTGTATATGTTTGTGCTGCAGGATTCAGCCGTGCATACAAGTGTTAATCAAGTATTAGAATTGTACTGCCGTGCAGTGCACAGAATGTCCTCGTCATTCTCCTATCGATTTTTGCTCCATTTTTAACACAGAACGTGCCAATAGTGCTGTAAGGAAATGCGTTTATCATTGCGGAGCAGAAACCCGTGAGCTTGTGTGCAGCATAATAGAATGCATGTGAGTGGACACATGGAGGATGTGGCTTGAAAAACTGGCCTTGTTTTGCAGGCTTAGATCAGAGCAAATGACTCATAATCACGCCACTAAACTTGGCAACAGCCTTCGCGTCTCCCACTGCACCTGGTGTGCGTCCAGAGACAGAGGAGCTTTTCCCCgtctgtgttagtgtgtgtgtgtgtgtgtgttagtgtgtgtgtgtgttagtgtgtgtgtgtgttagtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgttagtgtgtgtgttagtgttttaaAAGTCTGtgtactgttttgttttcagtttgaaTGAGCTAACCATGATGTTTGTCATGGAGAAAAATCATCTCAGTTGATCTGAGATGACGTACAGAGTAGAAAACTTTGCACATTTTCGTTCCCTtatctttacaaataaaagtgcAATGTAGGCTTGATTCAAGGATTATTTCATGCTTTAATACTTTAACATGTGATTCCAAGCTGTAGCGAAATTTGACAAACACAAGATATTTCCTACATTTGTGTAAGGAATTCTATATTAAAGATTGCTCCATGGATTGCTCCTGACAAATAACAAACTCTTTCATTATAATATTTCACAGTTCAGTTGACTAAGAGTCCCTACAAACAAGTCCATACAGCTGTGACAAAATCAGTTAAAATCATTTTCTCAGGTTCTTCATTATACTTCACATTCAGAGaaataaaagtacaagaaaTGGAACTATTTTTGGTTTTCTAAAGATCCTTTTGATCGATGGATGGATAGAAATgttctttattattatgttcTTGATTATTCAGTTTATCGTGGTGAAAAGAATTGCTAAAGAATCATGGGGCGAAATGTtgtaaaggaaatgaaaaaaatggttcttcttACGGCACATCTTTGTTCCCCAGACAAAAAATTTGTCACATGTCATTTCCTTTcgaataaaaacagcagatgaccactttgacatatgaatctggaatgattgacattTGCCTAAGTTTTTTGAACTCCGTGTGTGCAATCTGTTGACGTTGTACAATAACGCACTACTGTTGGTGGATGTGACTAAATTTTTTGTCCAGGGAACAAATATAAAGTACATTACAATTAGATAAGTGCATTTGTGCAGGATGCCTAATTTATATCAAGGGAACTTATTTTCCAAATGATCTTTAAACTCTTGTCATGCCACACACTTTCTGATTCCTACATCTATTTGCAGCACAGTCTGTCACTCTCTGTGCCGATCTTGCTCTCATAGGTCATCAGCCACgtgctaatgctaatactgTGCTGTCTTACTAAATTTCCAAACCAGCAGGCTGGTTTATTTTCGATGGCTATTTCCATCACAACTCTCTTTATTCTTATTTCGTTAGTGATTAATGAGAATTGTGCCAGCATGAGATGACTGATGTACACACTACTTAAGAGGCTATACCTGcttgctctttctttctactTTATAAAGAGCCTTGTGCCATGCTGTTGTTCGGTCGTAACAGACTGTAacctgtgacttttttttttttaatcacaaacgTAAATGTAAACCTGATTTAATTTGCTATGTGAGTACATTATCGGGATGTATGAGGGGCAAAAGGATTTCATGCACCATAGTGTTTATGTAATTTGCTGTTTGTGAgttataaaaaattacaaagaatGCTTGAAATACAAAGTAATTCCCTCATCGTGATGCAAGTGTCCACACTCTGATTGATTTACACGGTTTTTGAGACTGAAAATGATTTGTGAGTAAAATGTGGCGTGTGTTGACTTTACGTGAATCATTATGAGTTTTGGGTATTAGTTATAAATGAAACGTTAAACTACACTGTGATGTTTTAGGGATGACACACACCACAACGGCACTTAAATACTAACGTTCATGTAACAAGATATACAACTTTGTCCATAACTAATGacgtctgtctctctattttgTAAATGGTTATAAAGCTATGCACTTGGCTCAGCCAGAAAGATTCCTTTAAGAGTGGTTCATTTTCACCACTATATTCCGTACAGTTATCAAATTTTCAGTATATATTGGAAAATTTAAGATGTCTATGAAAAGCCAATACATATATTTAACTCTACCacaaatttctttatttttctgattatattaaatatagaatTATAGATGAATACTTCTATTTTACGATCACACAAATAATATTGTTTCCAAAGTTTTCTTGACCTCATGTTGTATTATTTGATGTATTATTGTTTCATGATGGATCTAAACCGTATTTCTACACTCAAATATGGATGTTTCATATTCTGTAATGTAAATTTGTTTATGGATGCATATTAATGGACTATTTGGGaggaaataaaggaaatgtTGGGCATCGTATAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453699 lncRNA upstream 38200 7448911 ~ 7450445 (+) True G382667
TU453677 lncRNA upstream 100409 7386510 ~ 7388236 (+) True G382646
TU453653 lncRNA upstream 227555 7260253 ~ 7261090 (+) True LOC113531088
XR_004577398.1 lncRNA upstream 331416 7154594 ~ 7157229 (+) True LOC117596228
TU453732 lncRNA downstream 1444 7538414 ~ 7544086 (+) False dpm2
TU454007 lncRNA downstream 109166 7646136 ~ 7646471 (+) True G382929
TU454009 lncRNA downstream 112339 7649309 ~ 7649523 (+) True G382931
TU454010 lncRNA downstream 112651 7649621 ~ 7650073 (+) True G382932
TU454022 lncRNA downstream 125897 7662867 ~ 7665688 (+) True G382942
XM_026921495.2 mRNA upstream 54625 7412105 ~ 7434020 (+) False pkn3
XM_026921497.2 mRNA upstream 54625 7418272 ~ 7434020 (+) True pkn3
XM_026921959.2 mRNA upstream 106807 7295229 ~ 7381838 (+) False cita
XM_026922257.2 mRNA downstream 1388 7538358 ~ 7544114 (+) True dpm2
XM_026921559.2 mRNA downstream 9490 7546460 ~ 7563680 (+) False pip5kl1
XM_026921560.2 mRNA downstream 9499 7546469 ~ 7563680 (+) True pip5kl1
XM_026921562.2 mRNA downstream 9499 7546469 ~ 7562586 (+) False pip5kl1
XM_034300487.1 mRNA downstream 10114 7547084 ~ 7563680 (+) False pip5kl1
XR_003403275.1 other upstream 210918 7277599 ~ 7277727 (+) True LOC113531673
XR_003403276.1 other upstream 211672 7276845 ~ 7276973 (+) True LOC113531674
XR_004577432.1 other upstream 430446 6962210 ~ 7058199 (+) False LOC113531592
TU452818 other upstream 1104985 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 1245948 6223168 ~ 6242697 (+) True G381893
TU454294 other downstream 605641 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 645421 8182391 ~ 8213107 (+) True G383217
TU454617 other downstream 1053397 8590367 ~ 8591155 (+) False gig2o
TU454806 other downstream 1227932 8764902 ~ 8775134 (+) True G383625
XR_003403287.2 other downstream 1831519 9368489 ~ 9368564 (+) True LOC113531685

Expression Profile