RNA id: XM_026921622.2


Basic Information

Item Value
RNA id XM_026921622.2
length 2500
RNA type mRNA
GC content 0.46
exon number 24
gene id LOC113531115
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 12253827 ~ 12264084 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgagtttgtttaattatttatggatattaaagaatattatatcgccaactttatttttaaggaaAGCAGAAGAATATCAAAACCGCAAGTTCTGGACCGTTGAAATGCAAAACGCCGTCACGAGACTGCTTTATCTCTGAGCCGCCATTTTAGCTTCTTAGCAAATTCCCCTCAAAACCAAACAACTctgttaacatttaaatttacattcacCGAGTCCCCGATTTACTGAAGTGATCTGCTGTCTTATGTAGCACAGGTCTCTGTGCATTTACAAtgaagacaaagaagaaaaacaagaacaaaaatttTGGGAAACCTACCCCATATGACCCGACTTTCAGTGGCCCGGTTTGTAAAAGGGCATTTACTGATGTCTTTTGCTGCGTTATTTTCATCGCTGCTATGGTCACCTATGTAATCCTTGCTGGCGCAGCTTGGCTTTATGGAAACCCCCAATACATCGTCTACCAGCAAAACTCCGATGGAGCGTTCTGTGGACTTGGACCTAATCTTGACAAACCCAGGGTGATTTATTTCGACATACTTAAGTGTGCCTCAGCAGTTAGTGTAACATCTGCAACATTCAAAGGCCTTCAGTGTCCGATCTCTCAAgtgTGCGTTAAACAGTGCCCCTCAACATTTTGGTTTTTGCCCCCTGAGGCGTTCACTGCAGAGGCAAAACCAAGTGACTTCTTCCAGCAGAAGTACTGTGACCCCAGTTTGGACCTCGCCCAGACCACATTGACGGTGCAAGAGATCGTGGATAAAGACCTGTGTCCAGCTTATCATACGCCAAGCAAACCGGttctGGGAAAATGTCTGCCCAGATTTGATCCAAATGCTGTTCCACCAGACTTCACTGTCCCTGGATCAGCTTCGGTCCAAGAAGCAGTAAAGAACATAATGGACACTACAAGCTCTCTCGGTTCAGGATTTAATGCTAAATCCGTGAAAGTCAGAGTCATTGAGGACCTCGCCCTTTCATGGCATTGGGTGATAATaggTCTGGTGATTGCGCTGGCGGTCAGTATGGTGTTTCTCCTGCTGATGCGatgctgtgtgtctgtggtggtCGTGCTTATCGTCACTGGTGTTCTGTCAGTGGGAGCATACGgtaTTTACCAGTGCTACCAGGAGTACCAGAAAAACATGAGCTCACGGCGCACATTTGGGGACCTCAGTCTTCAATCCAAGTTGTCAGACTACCTTCAGGTGAAGGAGATCTGGCTTACTTGCTTGGTGACACTGTCCCTGCTGGAGTTTCTCCTCTTGACGCTGTTTGTATCGTGTTTAAGAAAAGGACTCTCTGCGGCTTTGGCAATGATGGGGGAGTGTAGCAAGGCGATGGGTGTAATATTGTCTACAATGGCATACCCATTGCTTACATTTCTGCTGATCACACTCTGTGTGACCTTCTGCACAGTGACTAGCATAAATCTGGCTACTTCTGGATTGCCAGTATACTACATAGTTGCTCTGAACTCATTAAATCCTGACTGTAGTGCCATCACAGGCAAAGAAAAATGCGTACCAGAGACTTTCAAGGCATCAGACTACCCCACGTGCCCTGTGCGCTGTACTTTTGTTAaatatgatgatgaagaaggGTTTTTGCAGAGATATGCACAATACCTGCAGATTTATAACCTGCTGGCGTGTTTCTGGTGTCTTCATTTCATCCTCACACTGGGCCAGTGCACACTGGCGAGGACCTTCGGCTCCTACTACTGGTCCTTGAGTAAACCGGTGAATATTGGCCGATCTACTCTATCCAAAGCGTTCTTCCAGACTTTACGGTATCATACTGGCTCCATGGCATTTGGCGCCGTCTTCGTAACCATGTTCCAGGGCGTCCGGATTGTTCTGGAATATCTCGAAGATTCGACCAAAGGCGGACGGAGATGTTGGTGCATTTGCTACCCTCTGAGGATGCTGTTAAAATGCTGCTTTTGCGCCTTAGATAAAGTCTTCAAATACTTCAACAGAAACACGTACATATTGATCGCGATATATGGAGACAATTACATCGTGTCGGCTAAGAACGCTTACACACTCTGGGGGAGAAACAAAGACCGggtggtggtggtggaccGGGTTACGGActtgctgttgttttttgggAAACTGCTGGTGGTTGGAGCAGTAGGTGTCCTGGCCTTCTGCTTCTTCTCTGGAAACATTAAAGTGTCAGCTGACATTTTCCAGGCCGAGTTTCTGAACTATCGCTGGCTGCCTACTGTTATGGTGATGGTGGGAGCGTACTTCATTGCTCAGGGCTGCTTCAGTGTGTACAGCATGGGTGTGGACACATTCACCCTCTGTGTCATGGATGATTTGGAACGCAATGATGGGACACTGCAGAGACCCTATATGTCTAGGAGCATGATGCAGATTCTACAAAAGCAGAACAACTCTGTACATCATCAATCACAGTCATCCAGTTcttaaattaatcatttaatcattacTTTGACAATTAAAGTCCACTGAGCATGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_004577441.1 lncRNA upstream 63818 12182459 ~ 12190468 (+) True LOC117596260
TU456670 lncRNA upstream 419276 11833848 ~ 11835010 (+) False fcho2
TU456672 lncRNA upstream 509355 11744196 ~ 11744931 (+) True G385195
TU456656 lncRNA upstream 582246 11669493 ~ 11672040 (+) True G385187
XR_004577408.1 lncRNA upstream 614281 11627661 ~ 11640005 (+) False LOC117596234
TU456953 lncRNA downstream 16505 12280589 ~ 12322801 (+) True G385429
XR_004577433.1 lncRNA downstream 96529 12360613 ~ 12403419 (+) True LOC117596248
TU457126 lncRNA downstream 205639 12469723 ~ 12470164 (+) True G385588
TU457132 lncRNA downstream 283753 12547837 ~ 12548116 (+) True G385594
XR_004577380.1 lncRNA downstream 362408 12626492 ~ 12627278 (+) True LOC117596213
XM_034300659.1 mRNA upstream 135848 12036895 ~ 12118438 (+) False arhgef28a
XM_026921842.2 mRNA downstream 5092 12269176 ~ 12286124 (+) True hexb
XM_034300578.1 mRNA downstream 5093 12269177 ~ 12286124 (+) False hexb
XM_034300496.1 mRNA downstream 341197 12605281 ~ 12716830 (+) True fibcd1
XM_034300497.1 mRNA downstream 341197 12605281 ~ 12716830 (+) False fibcd1
XM_034300498.1 mRNA downstream 341197 12605281 ~ 12716830 (+) False fibcd1
XR_003403209.2 other upstream 943433 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 1874621 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 2486250 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 2882756 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 2883149 9371060 ~ 9371137 (+) True LOC113531672
TU457909 other downstream 1557704 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 1561766 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 3097274 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 3770739 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 3884276 16148360 ~ 16148432 (+) True trnam-cau_49

Expression Profile