RNA id: XM_026921630.2


Basic Information

Item Value
RNA id XM_026921630.2
length 4126
RNA type mRNA
GC content 0.43
exon number 16
gene id mcama
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14811102 ~ 14855941 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAAGATTATAGCCAAGAGAGCATTTTTGTGCAACTGGAGCCtgctctcctccctccctcggctcttctattctctctctctctctctctctctctctcatacacacacacacacacacacacacttcctcacacactcagcCCAGAGTGCGCTGCACAGTCGCGTGCTCAGATTGGAAAGCGtgcacactttattttttttctctccaaagTGCGGGATAACTGAAGGGAGAAAATGGTGCCAAAGAGCTCAGTTTTACTCCTCACGTTGTTTATCTGTTACTTCACTCAGGAAGTTGGCGCCCAAGTGTCCCTGAATATGGAGGACATTGTTGAAGTGTATAAAGGTGATCCAGCCGTCATCCGCTGCCACTACAGTTTTGCTCAAGATCCCAACATGGTCATGGTGCAATGGTTTGTGCGTGGTCCTGGAGGTAGAAGAGTAAGGATCTCCTACAGTGACCTCACCATGCAGAAGGTGGATGAGAATACAACCTACACAGACCGCATCAGCATTGCAGGGGATACCAGTGGTGAGAACCTGACTATCGTGGATGTCAGACTCTCGGATGAGAGGGAGTTTTTCTGCCAGGTCAACGGCCTTGCAGCAGGCAACGGAGAGGGCAGGACTCATCTAAAGGTTTTCAACCCCCCAGAGCCTCCTATGATAGAAGCAGTTTATTCTGGAGTTTCAGTGACCAGTCCATTACTATCAAAGATTGCAACTTGTGAAACTCGAGAAGGCTTCCCCAAGCCAAACATCACCTGGTACCGCAATCATGAGCCACTGTATCCCAAAAATGGCGAGGTTAACGTGGTTACCCTGGTGACCAGGGGGCCCAGCGGGCTGTACACGGTCCAGAGTGAGCTTCAGTACAAAGTTGCAAGGGAAGACAGAGATGCTGTATTCTCGTGCGAGGTCAGCTATTACGTTCCCGGTGCCATCCGAACGGCTGAATCCAGAGGTGTCAACGTCACAGTTCACTACCCAACATTAAACTTTGAGATGTGGAGGGAATTGCCCAAGGGCCTGGTCAAAGAGGGGGACACGGTGGAGATCCGTTGCCAGGGCGATGGCAATCCCCCACCAACCATCACTTTCAGCCGAGAACAAGAGCTGGATATGAGTCTGGAGGCCGAAGGCAACCTGCTGGTCCTGAAGGATGTGACGCGCAGAGACAGTGACGTGTACCAATGCCAGTCTCTGGACCTGGACTCAGTACGCTTTGATGTAGGTGCGAGCCTGCAGCTTACTGTGAACTATCTTGACCCAGCTGTGGTGGTTCCCAAAGACTCGGAGATCATGCTGAAAGGAGAAAGTCTGACAGCCACATGTAATGCTTTGTCCTCTCTAGAGACATCCACTGTGTGGCTCAAGgagggTGTAGAGATAAGACAAGGACACGTGCTCCAGCTGCAGGATGCTACATTCGACACAGCTGGACGCTACGAATGCAAGGTGACCGTTCCCAGCATACCAGGCCTGCATACCAGTGGATCAGTCCATATAATTGTGCAGGGCGCTCCTGAGTTGATAGATGTGGAGAGGGAGGTGGTCATGTTGGAGAGGGTGGGCAAGTGGCTGAACCTGAGCTGCGAAGCAAGAGGTTTTCCCCGACCCGTTATTACTTGGAACGTAACCGGCAGCCCTaaTTCACGTGAGGttgtgaagagagagacagaggatgTTGTTCAAAGCATACTGACTCTGAAGGTGACCATGGACACGGTTGCTACATGCAGCGCAACAAACTTGATGGGTGTAGAGACCAAGAACTACACCATCACAAGCATTCCTATCGTAACCCCGACAGCAAGGAACACTGCAGTCGATAACAGCGGCGTGATGATTGTGATCATAATCATCAGCCTTCTCCTCTTGGCCATCTTGGGCAGCGTGCTGTACTTCCTGTACAAGAAGGGCAAGCTGCCCTGTGGACATTCTGGCAAACAGGAGATCGTTAATGTGTACAGAACCAAAGAGATGACCAATAAGGATAACATTGTGGTGGAGATGAAGGCGGAGAAGACGGAGAAGACAGAGAAGTCAGTACTACTGAAGGGCGTCAATGGCAACAACAAACCACCAAGTGACCAGTACACTGACCTGCGTAAATGATCCAAAACCAAGGACAGAAGATGCCAACTGAAGCCCATTCACTGTCCCCTTACCAACCCAACAATCAAGAGTTATATGGATACGAATAACGTCTGCTGGAACAGCTGTCTTTCCTAAATAAAGAGGACATTCTTTGTCCATTTACGAGCTCTGGTATTCCTGATTGGCCGTATTGAACTAAAGTGAGCTTGTCCAGTCATGCCAGTTTTttatacttcttttttttttttttggcccaaaacactgttttattctgtaattcTCAACCACCTGAGGAATTCAATGTCACATTGTTTCAATGTATGACCTTTATAACCTTTAAaagtgtatatagtatataatatttagCAAGGTAAACTTGAACCATACAGCAAATTGAAATCAGCCACTCACAAATTTTCTTCCCTGAACTACAGAATCTGGTAATTATATACATCAGTCAGCtaaaataacagaatagtgGAAAATGCTGGGCTTTTCATATAACAACATAAGCTTTGTCTAACAGTATTTCTATAAACTACATCACAACAGCACCATAAAGTAAGTTTGACCAGtacaacatacatacataatcaCATTCCTCAATGATTTTCTTTCCAGTAGGATCACATAGTTCTCATCTCAAGCTTATGGCCAGCTAGTAACTGAAACACCTGCTTGCATACAGTCAAATTATGTTCAGTCCTTTTAGCCATTGATAGAAGCCGATCATCATACTGACCAATAAATTCAGAGTTTAGAGCCAATCACCACTTTTGAGGTTTGTTTTTGTCGATCAAAGAGACTACTGCTTTTGTAAATATTGTCAGCAGACTAAATTGTAGCTGCGTTTTGACTGCTGAGGGGATTCACagctccctctttttctctgcctCACGTTCATCAGCTGCAGTGTCTGACTGTTCAATTAACGTCCATGTTTGTTACACTGAGACTTCTTTTTTAAggcctgttttgtgtttttgtgtgcttGTTCATGTTTGCTCAAAAGGAAGGGTGATTTTGcgagtttgttttgtttcctcaAACCAGTGTGGATGAGTCGTGGGATTTTAAACAGAGGACGCATAGGGTTATTAACATCAAGCCAGGGTTTGTCCTCTTATAGTGGCCTAAAGTCCGAAGGCTGAATTGAATAACAAGcaatttgtatttcatttgtgtttattttttttaaaacccaagACTTGTTCTGTTGTTTTATGTTACTGTTTATCTTACAAAAAGGTGTTAATCTGGTAGCTTCCcttatttgttagctacattagccttgtatcACTACAACAAAAATATCTGAAGCAACCTTCAGACACAAAATGTATCCCGGCTGATTAAATACATATTGGGTAAATGGAAAATTGTGCATTTAATTTTTGGTTAAAAGTAATAATTTAACTGCTGTATATGTGGAAGTCTTTAAGTTTCTGTTACTTTTTATGGACACCAGTGCAGATGGCAAATGTTAATATAAAGTTAGTGCTTTGATCTTTTATAAAGATCGACATTATATGTCCACAATCATTGAAAAGCACCTCAGCCATTTTACTATCCATCCTTCATTGGATGATTTGTTCTTGTGATGGATCACATGCTTTATTTTGGCCTCATATCCTGTTATACCTGGAATACTCAAAATTATAGATTGGCTTGAATTTTATAACTTAACCTTGTTATAATTTCAACAAATGTTTTACCAGAGTAAAAACCAAACTATTAAAGCATGTTTTAAATTCACCAAATTCTTTCAACTAATCAAACATCCTCACAGACTACTAAATATTGTGAAGCGACATCTCACGTCTCATCCACGTGGCTCGACAAGACAAACTGGatataaagtgtatataaaCCTGTTCACCTGTGCGGTTTATTGTTTTTGTAGTAATGTTGTAGTTCTGcttatgtgtgtaaattaagAACGTGATTTGATGCTTGTGttttttatacactgtaattttcatttttgcaaaAACAATGCCAAATAAAGATAATGTTACACTCTAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458889 lncRNA upstream 95047 14708856 ~ 14716055 (+) True G387160
XR_004577415.1 lncRNA upstream 627051 14152144 ~ 14184051 (+) False LOC117596237
TU458144 lncRNA upstream 635677 14170058 ~ 14175425 (+) True G386495
XR_004577416.1 lncRNA upstream 656960 14152144 ~ 14154142 (+) True LOC117596237
TU458138 lncRNA upstream 680475 14130171 ~ 14130627 (+) True G386490
TU458927 lncRNA downstream 327 14856268 ~ 14868701 (+) True G387197
TU458941 lncRNA downstream 78763 14934704 ~ 14936042 (+) True G387208
TU459148 lncRNA downstream 307443 15163384 ~ 15233645 (+) False c27h11orf88
TU459154 lncRNA downstream 326372 15182313 ~ 15204882 (+) False LOC113531625
TU459156 lncRNA downstream 326372 15182313 ~ 15204587 (+) False LOC113531625
XM_026921634.2 mRNA upstream 15162 14792133 ~ 14795940 (+) True mis12
XM_026921486.2 mRNA upstream 55039 14748438 ~ 14756063 (+) True nup88
XM_026921694.2 mRNA upstream 717747 14086642 ~ 14093355 (+) True rad51d
XM_026922387.2 mRNA upstream 921835 13876835 ~ 13889267 (+) True rcc1l
XM_034300462.1 mRNA upstream 936193 13870651 ~ 13874909 (+) False ncf1
XM_026921636.2 mRNA downstream 2616 14858557 ~ 14860744 (+) True tlcd5b
XM_034300876.1 mRNA downstream 2616 14858557 ~ 14860744 (+) False tlcd5b
XM_034300511.1 mRNA downstream 6417 14862358 ~ 14916498 (+) True arhgef12b
XM_026922535.2 mRNA downstream 241127 15097068 ~ 15138075 (+) True drd2b
XM_026921448.2 mRNA downstream 370404 15226345 ~ 15233692 (+) True c27h11orf88
TU457943 other upstream 982954 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 987047 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 3500249 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 4431437 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 5043066 9765740 ~ 9768036 (+) True G384178
XR_004577401.1 other downstream 505417 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 1178882 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 1292419 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 1690200 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 1799728 16655669 ~ 16657113 (+) True LOC113531241

Expression Profile