RNA id: XM_026921632.2


Basic Information

Item Value
RNA id XM_026921632.2
length 4129
RNA type mRNA
GC content 0.43
exon number 16
gene id mcama
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14811102 ~ 14855941 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGATTATAGCCAAGAGAGCATTTTTGTGCAACTGGAGCCtgctctcctccctccctcggctcttctattctctctctctctctctctctctctctcatacacacacacacacacacacacacttcctcacacactcagcCCAGAGTGCGCTGCACAGTCGCGTGCTCAGATTGGAAAGCGtgcacactttattttttttctctccaaagTGCGGGATAACTGAAGGGAGAAAATGGTGCCAAAGAGCTCAGTTTTACTCCTCACGTTGTTTATCTGTTACTTCACTCAGGAAGTTGGCGCCCAAGTGTCCCTGAATATGGAGGACATTGTTGAAGTGTATAAAGGTGATCCAGCCGTCATCCGCTGCCACTACAGTTTTGCTCAAGATCCCAACATGGTCATGGTGCAATGGTTTGTGCGTGGTCCTGGAGGTAGAAGAGTAAGGATCTCCTACAGTGACCTCACCATGCAGAAGGTGGATGAGAATACAACCTACACAGACCGCATCAGCATTGCAGGGGATACCAGTGGTGAGAACCTGACTATCGTGGATGTCAGACTCTCGGATGAGAGGGAGTTTTTCTGCCAGGTCAACGGCCTTGCAGCAGGCAACGGAGAGGGCAGGACTCATCTAAAGGTTTTCAACCCCCCAGAGCCTCCTATGATAGAAGCAGTTTATTCTGGAGTTTCAGTGACCAGTCCATTACTATCAAAGATTGCAACTTGTGAAACTCGAGAAGGCTTCCCCAAGCCAAACATCACCTGGTACCGCAATCATGAGCCACTGTATCCCAAAAATGGCGAGGTTAACGTGGTTACCCTGGTGACCAGGGGGCCCAGCGGGCTGTACACGGTCCAGAGTGAGCTTCAGTACAAAGTTGCAAGGGAAGACAGAGATGCTGTATTCTCGTGCGAGGTCAGCTATTACGTTCCCGGTGCCATCCGAACGGCTGAATCCAGAGGTGTCAACGTCACAGTTCACTACCCAACATTAAACTTTGAGATGTGGAGGGAATTGCCCAAGGGCCTGGTCAAAGAGGGGGACACGGTGGAGATCCGTTGCCAGGGCGATGGCAATCCCCCACCAACCATCACTTTCAGCCGAGAACAAGAGCTGGATATGAGTCTGGAGGCCGAAGGCAACCTGCTGGTCCTGAAGGATGTGACGCGCAGAGACAGTGACGTGTACCAATGCCAGTCTCTGGACCTGGACTCAGTACGCTTTGATGTAGGTGCGAGCCTGCAGCTTACTGTGAACTATCTTGACCCAGCTGTGGTGGTTCCCAAAGACTCGGAGATCATGCTGAAAGGAGAAAGTCTGACAGCCACATGTAATGCTTTGTCCTCTCTAGAGACATCCACTGTGTGGCTCAAGgagggTGTAGAGATAAGACAAGGACACGTGCTCCAGCTGCAGGATGCTACATTCGACACAGCTGGACGCTACGAATGCAAGGTGACCGTTCCCAGCATACCAGGCCTGCATACCAGTGGATCAGTCCATATAATTGTGCAGGGCGCTCCTGAGTTGATAGATGTGGAGAGGGAGGTGGTCATGTTGGAGAGGGTGGGCAAGTGGCTGAACCTGAGCTGCGAAGCAAGAGGTTTTCCCCGACCCGTTATTACTTGGAACGTAACCGGCAGCCCTaaTTCACGTGAGGttgtgaagagagagacagaggatgTTGTTCAAAGCATACTGACTCTGAAGGTGACCATGGACACGGTTGCTACATGCAGCGCAACAAACTTGATGGGTGTAGAGACCAAGAACTACACCATCACAAGCATTCCTATCGTAACCCCGACAGCAAGGAACACTGCAGTCGATAACAGCGGCGTGATGATTGTGATCATAATCATCAGCCTTCTCCTCTTGGCCATCTTGGGCAGCGTGCTGTACTTCCTGTACAAGAAGGGCAAGCTGCCCTGTGGACATTCTGGCAAACAGGAGATCGTTAATGTGTACAGAACCAAAGAGATGACCAATAAGGATAACATTGTGGTGGAGATGAAGGCGGAGAAGACGGAGAAGACAGAGAAGTCAGTACTACTGAAGGGCGTCAATGGCAACAACAAACCACCAAGTGACCAGTAAAGTACACTGACCTGCGTAAATGATCCAAAACCAAGGACAGAAGATGCCAACTGAAGCCCATTCACTGTCCCCTTACCAACCCAACAATCAAGAGTTATATGGATACGAATAACGTCTGCTGGAACAGCTGTCTTTCCTAAATAAAGAGGACATTCTTTGTCCATTTACGAGCTCTGGTATTCCTGATTGGCCGTATTGAACTAAAGTGAGCTTGTCCAGTCATGCCAGTTTTttatacttcttttttttttttttggcccaaaacactgttttattctgtaattcTCAACCACCTGAGGAATTCAATGTCACATTGTTTCAATGTATGACCTTTATAACCTTTAAaagtgtatatagtatataatatttagCAAGGTAAACTTGAACCATACAGCAAATTGAAATCAGCCACTCACAAATTTTCTTCCCTGAACTACAGAATCTGGTAATTATATACATCAGTCAGCtaaaataacagaatagtgGAAAATGCTGGGCTTTTCATATAACAACATAAGCTTTGTCTAACAGTATTTCTATAAACTACATCACAACAGCACCATAAAGTAAGTTTGACCAGtacaacatacatacataatcaCATTCCTCAATGATTTTCTTTCCAGTAGGATCACATAGTTCTCATCTCAAGCTTATGGCCAGCTAGTAACTGAAACACCTGCTTGCATACAGTCAAATTATGTTCAGTCCTTTTAGCCATTGATAGAAGCCGATCATCATACTGACCAATAAATTCAGAGTTTAGAGCCAATCACCACTTTTGAGGTTTGTTTTTGTCGATCAAAGAGACTACTGCTTTTGTAAATATTGTCAGCAGACTAAATTGTAGCTGCGTTTTGACTGCTGAGGGGATTCACagctccctctttttctctgcctCACGTTCATCAGCTGCAGTGTCTGACTGTTCAATTAACGTCCATGTTTGTTACACTGAGACTTCTTTTTTAAggcctgttttgtgtttttgtgtgcttGTTCATGTTTGCTCAAAAGGAAGGGTGATTTTGcgagtttgttttgtttcctcaAACCAGTGTGGATGAGTCGTGGGATTTTAAACAGAGGACGCATAGGGTTATTAACATCAAGCCAGGGTTTGTCCTCTTATAGTGGCCTAAAGTCCGAAGGCTGAATTGAATAACAAGcaatttgtatttcatttgtgtttattttttttaaaacccaagACTTGTTCTGTTGTTTTATGTTACTGTTTATCTTACAAAAAGGTGTTAATCTGGTAGCTTCCcttatttgttagctacattagccttgtatcACTACAACAAAAATATCTGAAGCAACCTTCAGACACAAAATGTATCCCGGCTGATTAAATACATATTGGGTAAATGGAAAATTGTGCATTTAATTTTTGGTTAAAAGTAATAATTTAACTGCTGTATATGTGGAAGTCTTTAAGTTTCTGTTACTTTTTATGGACACCAGTGCAGATGGCAAATGTTAATATAAAGTTAGTGCTTTGATCTTTTATAAAGATCGACATTATATGTCCACAATCATTGAAAAGCACCTCAGCCATTTTACTATCCATCCTTCATTGGATGATTTGTTCTTGTGATGGATCACATGCTTTATTTTGGCCTCATATCCTGTTATACCTGGAATACTCAAAATTATAGATTGGCTTGAATTTTATAACTTAACCTTGTTATAATTTCAACAAATGTTTTACCAGAGTAAAAACCAAACTATTAAAGCATGTTTTAAATTCACCAAATTCTTTCAACTAATCAAACATCCTCACAGACTACTAAATATTGTGAAGCGACATCTCACGTCTCATCCACGTGGCTCGACAAGACAAACTGGatataaagtgtatataaaCCTGTTCACCTGTGCGGTTTATTGTTTTTGTAGTAATGTTGTAGTTCTGcttatgtgtgtaaattaagAACGTGATTTGATGCTTGTGttttttatacactgtaattttcatttttgcaaaAACAATGCCAAATAAAGATAATGTTACACTCTAAA

Function

GO: NA

KEGG:

id description
K06534 MCAM, CD146; melanoma cell adhesion molecule

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458889 lncRNA upstream 95049 14708856 ~ 14716055 (+) True G387160
XR_004577415.1 lncRNA upstream 627053 14152144 ~ 14184051 (+) False LOC117596237
TU458144 lncRNA upstream 635679 14170058 ~ 14175425 (+) True G386495
XR_004577416.1 lncRNA upstream 656962 14152144 ~ 14154142 (+) True LOC117596237
TU458138 lncRNA upstream 680477 14130171 ~ 14130627 (+) True G386490
TU458927 lncRNA downstream 327 14856268 ~ 14868701 (+) True G387197
TU458941 lncRNA downstream 78763 14934704 ~ 14936042 (+) True G387208
TU459148 lncRNA downstream 307443 15163384 ~ 15233645 (+) False c27h11orf88
TU459154 lncRNA downstream 326372 15182313 ~ 15204882 (+) False LOC113531625
TU459156 lncRNA downstream 326372 15182313 ~ 15204587 (+) False LOC113531625
XM_026921634.2 mRNA upstream 15164 14792133 ~ 14795940 (+) True mis12
XM_026921486.2 mRNA upstream 55041 14748438 ~ 14756063 (+) True nup88
XM_026921694.2 mRNA upstream 717749 14086642 ~ 14093355 (+) True rad51d
XM_026922387.2 mRNA upstream 921837 13876835 ~ 13889267 (+) True rcc1l
XM_034300461.1 mRNA upstream 936197 13870651 ~ 13874907 (+) True ncf1
XM_026921636.2 mRNA downstream 2616 14858557 ~ 14860744 (+) True tlcd5b
XM_034300876.1 mRNA downstream 2616 14858557 ~ 14860744 (+) False tlcd5b
XM_034300511.1 mRNA downstream 6417 14862358 ~ 14916498 (+) True arhgef12b
XM_026922535.2 mRNA downstream 241127 15097068 ~ 15138075 (+) True drd2b
XM_026921448.2 mRNA downstream 370404 15226345 ~ 15233692 (+) True c27h11orf88
TU457943 other upstream 982956 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 987049 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 3500251 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 4431439 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 5043068 9765740 ~ 9768036 (+) True G384178
XR_004577401.1 other downstream 505417 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 1178882 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 1292419 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 1690200 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 1799728 16655669 ~ 16657113 (+) True LOC113531241

Expression Profile