RNA id: XM_026921714.2


Basic Information

Item Value
RNA id XM_026921714.2
length 4388
RNA type mRNA
GC content 0.47
exon number 32
gene id myo1ca
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16593426 ~ 16623299 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AGTCAAAGTGATGGAGAGATGTTGGATGTGTGGAGAcatagaaggagagagaaagggagagcagagagagaggcagagatgTTTGGGCAGAGAGACTTGGCCAAATCAAACACGGCTAAtggaggacagaaagagagcgagGGATGGAATGCGCATTAGGGGTGTGgaggtggaggtggatgGAGGTGTGAGGTTGGTGATGGAGAGCGCTCTGTCAGCGAGGGATCGGGTGGGGGTGCAGGATTTCCTGCTTCTGGACAACTACACGAGCGAAGCAGCTTTCATCGAGAACCTGCGCCGGCGTTATAAAGAGAACCTCATATACacGTATATCGGCTCCGTGCTGGTGTCGGTGAATCCGTACAAAGAGCTCGGGATCTACTCCAAACCAAACATGGAGCGCTACAGAGGAGTCAGCTTCTATGAGATTTCACCTcacatCTTCGGCTTGGCGGATAACTCGTACCGTGCCCTGCGGACGGCGCGTAAGGATCAGTGTATCCTGATCTCAGGAGAGAGCGGGGCTGGAAAAACTGAGGCATCTAAAAAAATCCTGCAGTATTACACCACCACCTGCCCTACACGCgacaacacacactccatccgAGAGAGGCTGCTGCAATCCATCCCCGTGCtggagGCGTTTGGGAACGCCAAAACTCTGCGTAATGACAATTCCAGTCGCTTTGGCAAGTACATGGATGTGCAGTTTGACTACAAGGGTGCTCCTATCGGCGGCCACATCCTGAACTACCTTCTGGAGAAATCTCGGGTGGTGCACCAAAACCATGGAGAGAGGAACTTCCACATCTTCTACCAGCTGCTGGAGTCAGGGGACAGCTCACTACTGATGAGGCTGGGGCTGGACATGACCAACCCACAGCACTACCGCTACCTggttaagGGCAACTGTCCAAGGGTGAGTTCCATCAACGATAAGAACAGCTGGAAAGCCGTAACTAAAGGTCTTAGTGTCCTTGGCTTCAatgaggaggaggtggagGAGTTACTAAAGGTCATTGCGAGTGTTCTGCATTTGGGAAACACCCTGTTTGGAGAGGATGAGTACGGGGAGACACACTTCACCACAGAGACTCAGCTCACATACCTCACAGAGCTGCTGGGTGTGGAAGGGTCAGCTCTGAGTGAAGCTCTAACTCATAAGAAGATTGTTGCCAAAGGAGAGGAGATGATCGGCCCACTGACCCTCGAGCAGGCTCTCTCAGCTCGAGACGCCCTGGCCAAAGCCATATATGGTCGTACCTTTACTTGGCTTGTCCAAAAGATCAACCAATCACTGGCCTTCCAGGATGAAGTGTACTACACCAGCAAATGCTCCTCGGTTATCGGTCTCTTGGACATCTACGGCTTTGAGGTTTTTCAGAACAACAGTTTTGAACAGTTCTGTATCAATTACTGCAACGAGAAGCTGCAGCAGCTTTTCATCGAGCTCACGCTGAAGAGCGAGCAAGAAGAGTACGAGGCAGAAGGCATtgggTGGGAGTCAGTGGAATACTTCAACAACAAAATCATCTGTGACTTGGTGGAGGAGAAATTCAAAGGCATCATCGCTATTCTGGATGAGGAGTGTTTAAGACCAGGAGATGCCAGTGACATCACCTTCCTGGAGAAGCTCGAGGACAGGTTGGGAGGCCACGCCCATTTTGTGAcTCATAAACTGGCCAATGGGAAGATTCGCAAGGCTGTAGGGCGGGAGGAGTTTCGTCTGCTACACTATGCCGGAGAGGTCAACTACAATGTGAATGGGTTCCTGGACAAAAATAATGACCTTCTGTACAGGAACCTAAAAGAGGTGATGTGCCAGTCGGAGAATTCGATAGTAAAGCAGTGTTTCCATCCAGATGAACTGACAGACCAGAGGAGaccagagacaGCTGCTACCCAGTTTAAGTTGAGCTTGGCCAAGCTAATGGAGATCCTGATGTCCAAGGAGCCGTCATACATCCGCTGCATCAAACCCAATGATGCCAAACAACCaggaaggTTTGAGGAGGTGTTGGTCAGACACCAGGTGAAGTACTTGGGCTTAATGGAGAATCTGAGAGTAAGAAGAGCTGGATTTGCGTACAGACGAAGTTTCGAGGCTTTCCTACAGAggTATAAGCCTCTGTGTCCAGACACTTGGCCAAACTGGCAGGGAAAACTATCAGATGGTGTCTCTACCCTAGTCAAACACCTGGACTACAAACCGGAGGAGTACAAACtgggaaggtCCAAAATCTTCATTCGTTTCCCAAAAACACTCTTCCGGACCGAGGACGCTCTGGAAATCAAGAAACCAACCATCgCTATCATATTACAGAAATGCTGGAGAGGCTACAGGGAATGGGCCAAATACCAACGCATCAGACACGCAAcGATCACGATCCAATCATGGTGGAGAGGGGTCAAAGGGCGCAGGATAGCCAAGCGCCGCAGACAAGCTGTAGACACCATCCgaacgttTATAAAAGGTTTCATTCTGAGGCACGAGCCCCGCTGTCCTGATAACGAGTACTTCCTGGACCATGTGCGCTTTTCGTATTTGATGACTATCAAACGAAACCTACCAAAGAGTGTTTTGGAAAGGACTTGGCCTGTACCACCACCATCACTCGAAGAGGCCTCGGTGTACATCCACCGTCTGTGTATACGCAACCTGGTGAATGACTACTGCAGGAAAATCCAACCCGAGTGGAAGAAccagTTGGAGCAGAAGGTTGTAGCCAGTGGTATTTTTAGTTGTCAGAAAGACAACTACCCTCGAAGTGTCCCTCGGCTTTTTGTGGGCACCAGGctggAGAATGAAGAGATCAATCTCAAAGTGCGACAAACTCTCggaagtgaaaacaaagtgaagtatGGTGTGCCAGTCATCAAGTACGATCGGCATGGATTCCGTGCCAGGCCGCGGCAGCTGCTGATGACCGGCTCTTCTGTGGTTCTTGTTCAGGAGTCCAAAATCAAGCAGCGCATTGACTACAGTTCACTGCTGGgcaTCTCAGTCAGTTCCCTCAGTGATGGCTTTTTTGTCCTGCACGTGCCCACTGCTGACAGCAAGCAGAAGGGCGACCTGGTGCTGCAAAGTGACCACGTGATCGAGGCCGTCACCAAACTAGCCATCCTGTCGGACAAGATACATAACGTCAATGTCAGtcaggacagtaTTAGGTTTGCAATAGCCCGGGGCAAAGAGGGCATCATTGACTTCACCTGTGGGGCAGAGCTACGAGTGGTCAAGGCCAAGAATGGACACCTGTCTGTGaCGGCCCCACGAATCAACAGCAGCGTATGATCGCGTGTTGACCACGGTGGACCAATCACTCACTGAAGAATAATCCGCTTATGCCAATCGCCACACAATCGCCACACTTTATAATAGACTGTCATGCTGAAGTGAAAGTTAAgctcatgttttgttttgatagTTCATTCCAGATGAGCGCCACTaacttttaaacctttttttattgtttgatttgattttcacAGTAAAAGCATTTAGCAGCCAGACTAATGAAATGAATTCTGCACCAGTTATGATGATTGTTTTAGTTCATTCAgacttttaaccttttttaatGATTCTCTATGACTTTTGCACACTTTGGAAATATCGTGAAAATTTACGATATGGGGTTTTGCTTTAATTAGTTTGAAAATCTTGCACTTTCTTTAATGTCTTCAGTGGAGTACAGAGGATTAGCCTTAGGACATCTGTTACTGTCTTATTCCGATTCAGTAAACCAcaattcacttcctgttttaattTCCTTTCTCTTTGCTTGCTGGCACTGGAAGCGAGATCACAATGCAGGTCTAAAATACGATATACAGTTAGAGGCTGAGTGCATTTTAATGTGTAGATTGCAGGAGGTTCACAAATTCATCCACCCATTTTGCAGTGTCAGCATGTGTCATGAAAGACGATGACTGCATCTCTATCACCTACGCTGAAAGGTGAGGCAAATCGAGCTgtaaaaaacactgacattgcTACAGGTTTCCACCAACTGACCAGAAACAACTGCAAGAGAGTTGTAGGAAGGTAAGAATGAGCCAAAGCGAACCAGTCTTGGAGTAAGTGTAATTACTCAGGAGGGCTACAACACTGGTCACAAATTCAAGTCAAGCTATCAGTCATACAGtcttaatacaaataataacacGTTTACCTCAGCTGCTAACTGCAGAGCAAACAAAGACATCTAGCTAAATCTATACACATATTTGCACTCAGAAGGAAAGAGCTGAACATgagaaacatttctaaaaaaaaaaaaaaaaaaaactgaacaaacaaGAATAACCTTTCATACAAGTGAAGTCTTAAAAGAAGCCATTTGTAAGAATTCTTGAGTAATCTCCAAATAAATTCCAAAAATGCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460063 lncRNA upstream 155074 16449464 ~ 16449667 (+) True G388145
TU459867 lncRNA upstream 243740 16350041 ~ 16361001 (+) True G387973
TU459830 lncRNA upstream 383922 16218765 ~ 16220819 (+) True G387939
TU459829 lncRNA upstream 386510 16217763 ~ 16218231 (+) True G387938
TU459828 lncRNA upstream 387074 16217037 ~ 16217667 (+) True G387937
XR_004577438.1 lncRNA downstream 45706 16669005 ~ 16670716 (+) True LOC113531478
TU460179 lncRNA downstream 228089 16851388 ~ 16856409 (+) True G388236
TU460231 lncRNA downstream 376437 16999736 ~ 17002362 (+) True G388276
TU460466 lncRNA downstream 412160 17035459 ~ 17036456 (+) False G388463
TU460467 lncRNA downstream 412160 17035459 ~ 17036456 (+) True G388463
XM_026921763.2 mRNA upstream 29737 16562210 ~ 16575004 (+) True dpf2
XM_026921799.2 mRNA upstream 49195 16546110 ~ 16555546 (+) True cdc42ep2
XM_034300820.1 mRNA upstream 76164 16472460 ~ 16528577 (+) False LOC113531476
XM_026921801.2 mRNA downstream 19964 16643263 ~ 16647421 (+) True epd
XM_026921802.2 mRNA downstream 19964 16643263 ~ 16647421 (+) False epd
XM_026921762.2 mRNA downstream 25068 16648367 ~ 16654488 (+) True panx1b
XM_026921819.2 mRNA downstream 32635 16655934 ~ 16657093 (+) False LOC113531241
XM_026921758.2 mRNA downstream 159450 16782749 ~ 16788901 (+) True tmprss4b
TU460079 other upstream 49209 16546141 ~ 16555532 (+) False cdc42ep2
trnam-cau_49 other upstream 456309 16148360 ~ 16148432 (+) True trnam-cau_49
TU459555 other upstream 566136 16034823 ~ 16038605 (+) True LOC113531248
XR_004577401.1 other upstream 1237494 15361358 ~ 15367247 (+) True fkbp6
TU457943 other upstream 2776593 13825850 ~ 13828148 (+) True G386325
TU460111 other downstream 32370 16655669 ~ 16657113 (+) True LOC113531241
LOC117596262 other downstream 652200 17275499 ~ 17276968 (+) True LOC117596262
TU460579 other downstream 654591 17277890 ~ 17280519 (+) True LOC113531069
XR_003403218.2 other downstream 655168 17278467 ~ 17280328 (+) False LOC113531069
TU460582 other downstream 658745 17282044 ~ 17289481 (+) True rpl36a

Expression Profile