RNA id: XM_034300471.1


Basic Information

Item Value
RNA id XM_034300471.1
length 2884
RNA type mRNA
GC content 0.38
exon number 11
gene id LOC113531178
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16108565 ~ 16118052 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CAATGAATGTGAAAGTGAAAGGACTTTACGTTCACGTTATCTTCAAGTATCAAGTATCACTTCATCTAAAGCAGCAGATCGTTTTATGAGAAGCAGTAAAGcatTTCTTTTTGTCTGATCCTATAGTAATACTAAGATGGCATCAGGAAGCAGCAATTCTTTCTCATGGtgGTGGCCacaaaagggttcttcagtatCTTTCCAGGGCATCCGATCTCCTATAGAGTCAAATATAAAGTGTTTCGTTTGTAAAAGTGGAAATACACTGAATTCCCACAAGTACTTCATAGATCGTCTTAAAGAACAAATACCTCTGCAGGAGGTGCTTACAGAGAATGCGTGTGATTTCATTCTGGTTTTCTGCCCTATTGTGTCACGAGCTGGAACTGACATTGATGCAGCAGTGAAAAAGCTTCAGAATATTTCAGaaacCAAACCTGCTGTTCTGGTGGTGCTCCATCACACGTTTGATCGAGAGTGTGTTGTACCAGACAGCAGCAGAGTTGTAACCAGAAAAAACATGATTGCAGTCGACTGTCTGTTCCATGAAGATCAGGGATTACTGCAGTGTTCTAAGAATGATGAATCACTGTCCACAactacaaaatatataaaatctcagGTGAAAGTACTACATAAAAACGTGAGGAAGCAAGGAGAAGGTGTAAAGTCAGATCTAGACCTGAGAATCAGAGCAAAAAGCAATGAAGAGAAAGATGCACTACTCGAAGACACGAATATGAAACTAGTGAAGATGACTAATGAGGCAGAGGAAAGCAAAAATATTCAACATGAGAGAGATCAGCAACTGAACCAAAAATACGCACACATACAGAAAGCAAAAGAACTTGTGGAGTTAATGGAGAAAAGACTTGTGGCATGGCAGGAAGAAATACATGAACAACTGAAAggttttaaaaaccttttagaGATTAACGAGAAGATTCTTTCTGAGAAACAGGCAAAgttagtgaaaataaatgaaaattttcaAAATGCCACTGAACAGATTAAGGAGAAAAACAAGACACTAGAAGAGATGGACACACAACTAAAAGAGGTGAAGGGTGAATTGGAAAAAACAAGTACAAATttaaaagagaatgagagacagttgaaacagaaagagagacaactGGAGAATGTGGTCAAAGAGCTGGAAACCAGTAAAAATAAACTGGCAGAAAAAGAGAGTCTTctaactgagagagagagagagctaatgGAAAGATACAAACAGCTTCAGGAGAAAGACAGACTTCTGatagaaaatacacaaacacttcAGATGAAGAACAAGACACTGGAAGAGAAGGACACACAATTAAAAGAGGTGAAGAGTGAActggaaaaaacaaatacagatttaaaagagaatgagagacagttgaaacagaaagagagacaactGGAGAATGTGGTCAAAGAGATGGAAACCAGTAAAAATAACCTGGCAGAAAAAGAGAGTCTTctaactgagagagagaaacagctaATGGAAAGAGACAAGCAGATTCAGGAGAAAGACAGACTTCTGGCTGCACAAACACTTCAGATGAAGGAGGAGACGCTGGAACAGAAGGGCACACAATTCAAACAGgagaaagaacaagaagaaggGGTTGGAGAATTACCTGGGCCAAAATGCCATCTGGTATTAGACAGTAAATCACAGGAAAATAAAGACCAACAGGTAGAGGACattatagatagacagatagagaataAAAATGCAGAACTGAAGAACAGCGAGAATCTGACCCAAGAGAAAGGCGCACCATCCAAagatacaaaaacagaaatagagaACATGGCTAAAGAGCcacaggagagaaacagagctgcACATGAGGGAGATGAACAACTGAAACAAGTGAAAGACACACAGGAGGCACATATACAAGTGGAGGatacagagaaaaataatgtggaaaagGATGAAGACTTAAACAAGGAAAATGAGCATCAGAAGGGTCAAGACACAcagcacaaagagaaagaaagatttgcAAATGAACAATTAGTGACTAATATAAAGAGTCTATCTGAGGCAGTgttaacagaaaataatgaaacactTAAGAATGGTACTGAAGACAGAGCTCAGTTAGACAATACACAAAAACCTCAGGTGAAGAATGAGACAGTTGAAGAGCAGAACACACAGCTAAGTGGGGTAAAGGATGAACTGGAGAAGGAAGTCAATATGTCATCACAGGAAGAGGAGCAAGAGAAAAAGGAGCAAGAACAGCCAGGTGATGTTCTTGCCAGAGGAACAGACAACTGAGCTGGTCAGCAAAGGCAATTAAACAGCTTGAGAAAACAGAGAGCTTGGaagcaactgaaaaaaacaagcaacagATTCAAGAAAAAGATGTACTTCAAAAACTGGTTTAGATTAAGATGTGCAGTGTGTCTTATGCATCTGTAAGAAGTAGCATAACTTTTTTCAGACTGGCTTGCATTTATATGCCATTGCAGTATTGATTGTTAGTATTATGTGTGATTACTCTTGTGCCTGTACTGATTATATATGTATCTATATCTATAATGACTGATTCTGCAATTTTAAAGTCTGGTGTGAAATCTTTCTCTTTGGTCTCAGTGAAAACTACTCTATCCGTCTCCTCTGTAGCTTTACTACAAACAGTTAGCTGTTATCAACACTGGAATACGGTGAACCACCGCTGAATGAGACATCTATATAGATTATGTCTGTGATCGGCAGCAAGCCAATAAAAGTTAGAATGGGCTATGAGCTAAAACTGGAAAATTGTTGGGTGGtgggaaaaatgtattttttccttaTACATTTAAACTCTTTGTGTTAATCACTGTATCATGAAAATGTTCTTGTTGCCTCAATTCATTGAATAAATATGAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459774 lncRNA upstream 10998 16097365 ~ 16097567 (+) True G387896
TU459763 lncRNA upstream 13786 16093466 ~ 16094779 (+) False si:ch211-284e13.4
XR_003403226.2 lncRNA upstream 70459 16035231 ~ 16038106 (+) False LOC113531248
TU459553 lncRNA upstream 121523 15942086 ~ 15987042 (+) False G387707
TU459824 lncRNA downstream 23958 16142010 ~ 16142239 (+) True G387933
TU459814 lncRNA downstream 24890 16142942 ~ 16210315 (+) False lrch2
TU459828 lncRNA downstream 98985 16217037 ~ 16217667 (+) True G387937
TU459829 lncRNA downstream 99711 16217763 ~ 16218231 (+) True G387938
TU459830 lncRNA downstream 100713 16218765 ~ 16220819 (+) True G387939
XM_026921710.2 mRNA upstream 12381 16077089 ~ 16096184 (+) True si:ch211-284e13.4
XM_034300954.1 mRNA upstream 22242 16077089 ~ 16086323 (+) False si:ch211-284e13.4
XM_026921796.2 mRNA upstream 38757 16067203 ~ 16069808 (+) True LOC113531220
XM_026921793.2 mRNA upstream 38757 16067204 ~ 16069808 (+) False LOC113531220
XM_026921780.2 mRNA upstream 44862 16058113 ~ 16063703 (+) True si:ch211-284e13.6
XM_026921768.2 mRNA downstream 2740 16120792 ~ 16131789 (+) True LOC113531200
XM_034300716.1 mRNA downstream 24930 16142982 ~ 16208908 (+) True lrch2
XM_034300717.1 mRNA downstream 24930 16142982 ~ 16208908 (+) False lrch2
XM_034300718.1 mRNA downstream 24930 16142982 ~ 16208908 (+) False lrch2
XM_034300719.1 mRNA downstream 24930 16142982 ~ 16208908 (+) False lrch2
TU459555 other upstream 69960 16034823 ~ 16038605 (+) True LOC113531248
XR_004577401.1 other upstream 741318 15361358 ~ 15367247 (+) True fkbp6
TU457943 other upstream 2280417 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 2284510 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 4797712 11297980 ~ 11310853 (+) False ajm1
trnam-cau_49 other downstream 30308 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 428089 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 537617 16655669 ~ 16657113 (+) True LOC113531241
LOC117596262 other downstream 1157447 17275499 ~ 17276968 (+) True LOC117596262
TU460579 other downstream 1159838 17277890 ~ 17280519 (+) True LOC113531069

Expression Profile