RNA id: XM_026921746.2


Basic Information

Item Value
RNA id XM_026921746.2
length 4873
RNA type mRNA
GC content 0.46
exon number 4
gene id si:ch1073-224n8.1
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16382470 ~ 16389670 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCGTTCCCATAATTCCACACAGGACGAACTTAGCCGTGTTTGTGTAGAACCGCACAGTTAAACCTGCATTCTCCTGTTTCTAAAAAAACCTCCAGAACACATTCATGCTAAAACTACATCGCAAATCCTGCTAGAAACACATTAACCTGTTTCTCTGTTCTCTAACGTTCCTTTCAAAGTTTGTTTACATTAACTCGCTAGTGGCTAACAAGCTAACCAGGCACTTGCTAGCTGCTTCCGTCGCATAGTGACGCACGGCACACTTTGATGACGTAAAAGTGCGGTATAATGTCAAGGTTTAAATGAGTGGACTGATTGCTAACTTGTTACGAAGTTGCTAGTGTAGTCATTGTGCTTATTAGAATGTCCTGATACACAAAATGCCGAAGTAAAACGACACTTTTGGTCGCGGTTGCTGCGGTGAGGGAGACGTCATCACTCCGCGACGAGATTTTCGACCAATCCGAAGTCAGAAGTGGCCTTCTCGGTTTTATTGTGGGGGAAAAAGGGGGTCGCGTCGCAGCTCGGGCGTGGGATCTGTTATGGTGAAACGCTGCAGAAGAGACAggttttgtttactgtttagaAAAGGAATGTGTTTTAGAATAACTGAAGCCTCTCTAGAAGCCTGTGCGACTCGGTTAATGATTAATCGCGCGCTTGAATAACGTTACCCGTTACCGGAATTCTGAATGGGTTGACAGCGTTGTGTTGCATCGCggttaatatttttttactaatattatttttaataataataataaaagcaaaaccGATCTCGAGTTAACAGTCAGATTGCCCGGATTTCGCCATGAACTCGAAGCGAAACAATGCGGGTGAaaatggaggaggaggacgcATGAACCCGGCGAGCGAAACCCCGGCGGGCGGAACGCACCGGAAACCGAGCAGCGCGAGCTCTCCCGGTAAAGCCGGAGCGCGAGCGGACAGGGGCGAGCACGCGCACGACAGCAGGAGCACCGTGTCCGTCTCCTCACTCAGGTCCCGCCTCGGTCCCACCATCAGGTCCGCTCTGTCCTCCGCCGTGGAGACGCTGCTGGGGGAGATCGCAGCGGTGATGTCGGAAACCGAGGACGAGCTGCTGTCCAAAGAGCGCGAGAACGAGAGGCTGAAGGCGCGACTGGACGCCTCTGAGCGCGAGCTGAAGACGCTGCAGGAGTGCCTGTGCAGTGCTCAGAAGCTGATCGATCAGCTGCAGGGTCCGTTCAGCAgccatcctcctcttcctcctcccatGTCCGGGCAGCACGGCTACAACAACCCGGCGCCGCCCACAAACGCAGGTCGCCTGACGCACCGCGGGGCAGGAGACGACGCTGACCCGCGCTGCTTCGCCAACAGCGAGGCAGAGCTAAGCGGAGCGCTAGGAGACGCCATCCACGGCTTCGAGGCTAGGGACGAGTTCAAAAGCTGCCACCTGTCCATCCAGGCGGACGGCACCGTCACCAACAGCTACTACGACCCCATGGCTGTGCACACCGCCGGCATGTGCCACGACGTCAACAGGGCAGGTGAGATGAGTGATCGGCGGCTGTCTCACCCTCCCTCACACTCTCCTTACGGGGTGAAAGAGGAACAGGCTCCCACGTCAGGGCCGGTGCGTGTCAGAGGCGACGCCGAACACGGCGGCCAGAGCGAGTGCGACCAGGGTTACGCCCACGTGGTGGAGGAGCAGGGCGTTCCACGTTCCCGGAGACACACTGCTAAACACGCTCCGTCTTCCGGCTCGCATAACGGCCCTTCTTCGTCCTCTGCCGGAACGCCTCCACAGGGGCCATCCGGTCTCCGCGCCTCCTCCAGAGCCGTGTCTGCAGCGTCCTCTAGGCAGAGTCCCGGTACGAGCGACTCCTCCCCTGACGCCCGCCGGCGTCGACGCCCACCCTCGGAGCTGATGGGCGAGGTGGCCGGTGAGCGACCGCACCTCTGTCTGGAGTGCGGCAAGACGTTCCGGCTGCTCTCGAGCCTGAAGAAGCACCTGCGCATCCACACGGGAGAGAAGCCGTACCCGTGCAGCGTGTGCGGACGACGATTCCGCGAATCTGGCGCGCTCAAGACGCATCTGCGTATCCACACGGGCGAGAAGCCATACGCGTGCAGCGAGTGCGGCGCACGTTTCCGCCATCTGGACGGCCTGCGCAAGCACGGACGCACGCACACGGGCGAGAAGCCGTACGCCTGCGGCGTGTGCGGGAAACGCCTCAGCCGCCTGCAGCACCTCAAGCACCATCAGCGCATCCACACCGGCGAGCGACCGTGCCGATGCCCCCTGTGCCAGCGCTCGTTCCAGGACGCCGCTAGCCTCAGGAAGCACCTGATCAGCGTGCACCAGGGAGAACCGGGCGCCGAGGAAGCCCACGAGAGGCTGGCGGCCACCGAGCTCGGAGAGCACGACCTCCAGGGCTCCGTGGAGGACGAGGAGATGAGGTTCGAGATGTGGGAGGAAGAGCGCGAGGAAGGCGACGCTGCCGTGGACTGCGTGTAGAATTGCTTAGAAAATTGCCCAAGATACTGATGGTggcaaaaatgttcaaaatttaaaattcagatttttattgATTCTTGAGTCATGGACACATCAAgctgtgaaaaatgaacatCTGCCATGTTGCAGAAATCCATTCTAGCCCTAATTAAACGATCCCGGCTTTCCAGAGCGCGTATGCAGAGCTACGTTTGACAGCTTGAACATGGACTAATGGAATAATGCTTCTGGGGATCAGTTTGCTTGTTGTGACGCGAACTTCACGTCGTCAGAACAAATTTCCGGTGTCAGTATTCCCACAAACTGAACTTCCTGCTTCTCTGGACGCTCTGTGTCACGTTCCTGGTTCTCTGTTGTAGTtagtaataatgtaaaatagGTACTGTGGGGAATAGAACTATGACCATCGTGGATCTCATTaagacttctctctctctctttctcttatgCACACACGCATTTTGTTCACCCACAAGCATAAATCAGCTGGGGAAAAATTAAAgcgtgctttaaaaaaaaaaaagctatgtgcccatataaaaaaattcactttcgcaataaatatttaactttacttttcacaatattataattaaaggtCCGGTTTGCAATTTAGAAGTCGTAATATTTTTCGATATCTTTCAAAAAACTGTGATTTTGCTCAAAACTAATTGCTTCATTTCAGCTCatttacatgtatatttttctggccctgaaattagctgcttagcttggcctttttttttttttttttttgtcctgaaaTGGCAACTCAAGACAAAGCATTTATAATTTTGATAAAGTATATGAAGTCAGTCATAATGCATGTCAGTGGTGGGCTATACATAATTATGAAAATTACATACCGctgcttttaaaagaaaaaaaggtaaggtaaaactgataaaattattaaaaatttttcaTTGGTTGGAGAGACAGTTAATGTTCAATAATCAATAGTAGCCAATAGTAattcatgacaaaaaaaaaaatcccattgaCGCAATTTCTTTTTACACAAATTTCCATGGAGTGTGATCAAGCCAAGACATGGTGAAGATCATGTTTGGCTCCAGTGATAAAGTAAAAGAGCAAACTTCGGACTTCCGACATGTATCTTGGCCGATCGGCTGCAATTCTGGCCCTCGAAGCCGTGTTTATTCTGAAGCAGAACTGCAGTAAATAAAATCCTAAGagaaagaatagaaaagaaacacacagtgcTGCCCTCTTCTGGTCAATCTGATGAACTGCAGGTTGAGGATTTATAAAGCAgaagttttgttcatttttaaaaattttatttcccTGTTTTAACCCTTTACCTCTTGGCTTACTCATCTTTCTATTGTGTTTCTGTACAGTTTATAAAATGAACAGGAAGAACAAAACTTTTAGAAACGCCATCTTCTGGTCAAAACTGCATGATCAAGGTTTTTTAACGCAGACATTATTttggttttgggtttttttttgtttgttttttaaaattatttcttttctctttttaccCCATTATCTCCACTCTTGTTGATATTTCCATTGTGTATCGCTAAATATAGtattaaaaaagaagaacaggGCCATTATAACGTTTAGAAACGTGCTGCCCCCTTATGGTCAAATCATGGAAATACATGTTGAATGTTTATAAAGCaggttattgtgtttatttgtttttgttttttccttgttTACTCTGttacctttatttttattgacattTCTGTAGTGTATTGCAGAATATagtataaatagaaaaaaaaacttatagaAATGTTCCGCCCCCTTATGGTCAAACTGAGGAACTACAGGTTGGATGTTTTCTAAAGCAGGAGttaaattgtttttgtatttttaattttctgtattttagtCTTTCACCTCCAGTCCTATACACATTTGTGAATATAGCATATAAaaccattttcactttttttttttaaagccagggtgttttctgtttttaacaccattcatgcttttgttgcatgttttaccttttatggaTATTATAACGTGTTATCATGGGAGTTTATAAACCTTTTTGaactttttgttcatatttacagcttttttttttgtctagtgTAAAAATAGTTCTGTAGTAGATACTCTAAAACTAATACCAACATAAGCCGTGTTTTATTAACACTTCCACGTGTAAATAACCTTTAGATATATCTCGTTTTAGTGTTGAATAAATGTGAGTTAATCAAAGTTTGGTAAATGTTACGTAAACTGGACAAATTAGTTTTACTGTTACTGTGTTATGAGAgacatgactttttttaaaaaataaatccgaGCATGCGTTTTGTAAACCTGTAGCCGTGTTTCCCTCATAAAAACGTCTGTTAAATGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459867 lncRNA upstream 21469 16350041 ~ 16361001 (+) True G387973
TU459830 lncRNA upstream 161651 16218765 ~ 16220819 (+) True G387939
TU459829 lncRNA upstream 164239 16217763 ~ 16218231 (+) True G387938
TU459828 lncRNA upstream 164803 16217037 ~ 16217667 (+) True G387937
TU459814 lncRNA upstream 172155 16142942 ~ 16210315 (+) False lrch2
TU460063 lncRNA downstream 59794 16449464 ~ 16449667 (+) True G388145
XR_004577438.1 lncRNA downstream 279335 16669005 ~ 16670716 (+) True LOC113531478
TU460179 lncRNA downstream 461718 16851388 ~ 16856409 (+) True G388236
TU460231 lncRNA downstream 610066 16999736 ~ 17002362 (+) True G388276
TU460466 lncRNA downstream 645789 17035459 ~ 17036456 (+) False G388463
XM_026921790.2 mRNA upstream 51216 16328148 ~ 16331254 (+) True LOC113531216
XM_026921733.2 mRNA upstream 79721 16256294 ~ 16302749 (+) True klhl13
XM_026921734.2 mRNA upstream 80200 16256294 ~ 16302270 (+) False klhl13
XM_026921735.2 mRNA upstream 80200 16273924 ~ 16302270 (+) False klhl13
XM_034300562.1 mRNA upstream 143319 16220974 ~ 16239151 (+) True zgc:163098
XM_026921709.2 mRNA downstream 5676 16395346 ~ 16443128 (+) False ltbp3
XM_026921708.2 mRNA downstream 5677 16395347 ~ 16443128 (+) True ltbp3
XM_034300818.1 mRNA downstream 64502 16454172 ~ 16528577 (+) False LOC113531476
XM_034300820.1 mRNA downstream 82790 16472460 ~ 16528577 (+) False LOC113531476
XM_034300819.1 mRNA downstream 86153 16475823 ~ 16528577 (+) True LOC113531476
trnam-cau_49 other upstream 234038 16148360 ~ 16148432 (+) True trnam-cau_49
TU459555 other upstream 343865 16034823 ~ 16038605 (+) True LOC113531248
XR_004577401.1 other upstream 1015223 15361358 ~ 15367247 (+) True fkbp6
TU457943 other upstream 2554322 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 2558415 13821788 ~ 13824055 (+) True G386294
TU460079 other downstream 156471 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 265999 16655669 ~ 16657113 (+) True LOC113531241
LOC117596262 other downstream 885829 17275499 ~ 17276968 (+) True LOC117596262
TU460579 other downstream 888220 17277890 ~ 17280519 (+) True LOC113531069
XR_003403218.2 other downstream 888797 17278467 ~ 17280328 (+) False LOC113531069

Expression Profile