RNA id: XM_026921763.2


Basic Information

Item Value
RNA id XM_026921763.2
length 2868
RNA type mRNA
GC content 0.46
exon number 13
gene id dpf2
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16562210 ~ 16575004 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGGCGCGCATGCGCAGTTGGCGTCCCCCGCTCAGTACAAGCGTAGGCGAACCAAGATGGCGGCGGTGGTGGAGAATGTTGTCAAACTacTGGGAGAGCAGTACTACAGAGACGCCCTGGAGCAGTGCCATAACTATAACGCCCGTCTGTGCGCAGAAAGGAGTGTGAGGATGCCCTTCCTCGACTCGCAGACCGGCGTCGCTCAGAGCAACTGCTACATCTGGATGGAGAAGAGACACCGAGGACCGGgtgTGGCTCCGGGCCAGTTATACACGTACCCCGCCCGCCgctggaggaagaagaggagagcTCATCCTCCAGAAGACCCTCGCCTGGCTTTCCCCTCCCTGAAGTCAGagTTGGACCTGGGGCTGAAGAAGGACATGCTTGGCTCCAGCGACGGCAGCAGCAGCCTGGAGGCTCTGCTCCGAGGAGAGCCGCTGGAGAAGAGATCGGCGCTGGAGCTCAGGCCGAACGACGAGGAGCCTGCGCACAATGAGTACACGAGCGGAGGACTCAACCCTGCGACCAGAGTTCggaagagaattGTGGAACCTGATGACTTCATGGACGACCTGGATGATGAAGATTATGAAGAAGATACACCGAAGAGACGCGGTAAAGGCAAGGGAAAGGGGCGGGGCGTCAGCAGCGCTCGCAAGAAGCTGGACGCAGCAGCCGCTCTCGAGGATCGGGACAAACCTTACGCCTGCGACaacacTTTCAAACAAAAGCATATTTCAAAAACTTCTGAACGAgtctgtgGGAAGCGCTACAAGAACAGGCCCGGACTGAGCTACCATTACACCCACTCTCATTTAGCCGAGGAGGAaggggaggaaaaggaggaggcggagcttcaAGAGCAGACCCCGCCCCCACCTGAGGAGCCTAAGAcCGCCCCTAAGAAGGGTCCTGATGGTTTGGCCCTGCCCAACAACTACTGCGATTTCTGTCTGGGTGATTCCAACATGAACCAGAaaactggccaatcagaagagCTGGTGTCCTGCTCCGATTGCGGCCGCTCCGGTCATCCCTCGTGTCTGCAGTTCACCCCAGTGATGATGGCGGCGGTGAAGACGTACCGCTGGCAGTGCATCGAGTGCAAGTGCTGCAACATGTGCGGCACATCGGAGAACGATGACCAGCTGCTCTTTTGCGACGACTGTGACCGAGGCTATCATATGTACTGCCTCACCCCGCCCATGTCGGAGCCTCCTGAAGGAAGCTGGAGCTGCCATTTGTGTTTGGACCTGCTGAAAGAGAAGGCTTCCATATACCAGAACCAGAACGCTCCCCCGTCGTGATGGACCCGCTGCAGAACACTGGCCCTGCCTTCTCGGTTCCCAGCTCTTTATGTGGCCTCTCAATGAGTGAGGGAAGaggtttaaaacaaaaaaaaaagagagagagagagagatgctgggGACCAGAAAAGGGAAACATAGTTAACCTATTTATCCAAGGAAAGGGAgggatgaatggataaaaacgAGAAAAGataatgaaaaatggaaaacgAATCCCTCCTCTTGGCAGGTTTAATTCCAATATGACTGTTACACAGTTCCAAGTTTTAAACTACCCACTGCTTTTTGTTTTCAACTATTAATcttacaacaaaacaaaacaaaaaaaaaaacagtatctaTAACTGACTAATCCGAACCCAAACTGTCTAACAATGTGCTCTGACAGTAGACGACTCTGCTCATTAGTAAACGCCTCCTTCAGCTGCTCGAACTATTCACCAAAACCCACACTAGCTAACATCAGTAGAGACTACTCTTCACACCGGTTACGTTTCTAGTCGCCCAGTAATAGTTGAAATCAATCAGCATGCTTGTTCGTAATAAGACAAATGGTAgcgtgttgttgttttttttgtatatttatatatttgtaaagcATATAAAGGTGTGATGTATTTAAAAGTGAGATTATAAAAAGTGATTGGTTATTATTTTAGCggtattaagcctatttctttATGTCGAAAGCATCATCCGCCAGTGCCATCGATGCGTATGCTTCGCCGTCGTCGCAGGGTTCATCCtttaaaatggtttttttttggtattttttttttctttagtttgtaaaaaaatttaaatatagctTCCTCAAGGATCTAATAAAGTTAAAtgtagtgtattagtgtataagATGGCTCAGGAGACATTGTGGCTTATAATcgattaaaatgtaaattcacGCAAGATTCGTGGATTTGAGAATAACAGCTCACAACTCAGGTTGGTTTCTTGTAGATTTTAGATTCTTGTCAGAACTAGCTAATCCAGTACTGACACACTGTTTAGCATGAAATGCAATATGGCCTGATTtctaaaaatggacaaaatggtGTACACGACATTCTGTCTGTTCAGATGATGGTGTTATTTGTCAAGACGGTTACTTAGTCAACCTGCAGTACTTTGAGTATTGCTTCCAGCACCTGTCACTTTGACCGTATCCTAGTGTCATTTACAGTTAGAACTGTTTAACCATATGCATGTTTACCTGGTACCACTTATCAAAGTACACTTACGCTTATGCTCGCCTCTTGTTGCACTCAACATAACAATCTTTATTTGGGAAagttttgtaatatttagttCTGCTGTTATATCAGTAGTCAACTAACCATTATTAACACAGTAAATAAAGGTAACAAGTTTTTGTTAGTAcagctatttgttttttttgttttttttaaacagtggccattaattttttttttttttgtcaattatTTTTGCCAGGTTGTTTTTAAGTGGTTTGATTCATGATGGAATGTTTTGCTTTGTGGTACAAATCTTGAATTCTTTTTCTCCAAGGAAAATAAAACCTATTTAGCACTgac

Function

GO: NA

KEGG:

id description
K13196 DPF2, REQ; zinc finger protein ubi-d4

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU460063 lncRNA upstream 112543 16449464 ~ 16449667 (+) True G388145
TU459867 lncRNA upstream 201209 16350041 ~ 16361001 (+) True G387973
TU459830 lncRNA upstream 341391 16218765 ~ 16220819 (+) True G387939
TU459829 lncRNA upstream 343979 16217763 ~ 16218231 (+) True G387938
TU459828 lncRNA upstream 344543 16217037 ~ 16217667 (+) True G387937
XR_004577438.1 lncRNA downstream 94001 16669005 ~ 16670716 (+) True LOC113531478
TU460179 lncRNA downstream 276384 16851388 ~ 16856409 (+) True G388236
TU460231 lncRNA downstream 424732 16999736 ~ 17002362 (+) True G388276
TU460466 lncRNA downstream 460455 17035459 ~ 17036456 (+) False G388463
TU460467 lncRNA downstream 460455 17035459 ~ 17036456 (+) True G388463
XM_026921799.2 mRNA upstream 6664 16546110 ~ 16555546 (+) True cdc42ep2
XM_034300818.1 mRNA upstream 33633 16454172 ~ 16528577 (+) False LOC113531476
XM_034300820.1 mRNA upstream 33633 16472460 ~ 16528577 (+) False LOC113531476
XM_034300819.1 mRNA upstream 33633 16475823 ~ 16528577 (+) True LOC113531476
XM_034300821.1 mRNA upstream 35555 16475823 ~ 16526655 (+) False LOC113531476
XM_034300824.1 mRNA downstream 18422 16593426 ~ 16623299 (+) False myo1ca
XM_034300823.1 mRNA downstream 24680 16599684 ~ 16623299 (+) True myo1ca
XM_026921715.2 mRNA downstream 24681 16599685 ~ 16623299 (+) False myo1ca
XM_034300822.1 mRNA downstream 29737 16604741 ~ 16623299 (+) False myo1ca
XM_026921714.2 mRNA downstream 29737 16604741 ~ 16623299 (+) False myo1ca
TU460079 other upstream 6678 16546141 ~ 16555532 (+) False cdc42ep2
trnam-cau_49 other upstream 413778 16148360 ~ 16148432 (+) True trnam-cau_49
TU459555 other upstream 523605 16034823 ~ 16038605 (+) True LOC113531248
XR_004577401.1 other upstream 1194963 15361358 ~ 15367247 (+) True fkbp6
TU457943 other upstream 2734062 13825850 ~ 13828148 (+) True G386325
TU460111 other downstream 80665 16655669 ~ 16657113 (+) True LOC113531241
LOC117596262 other downstream 700495 17275499 ~ 17276968 (+) True LOC117596262
TU460579 other downstream 702886 17277890 ~ 17280519 (+) True LOC113531069
XR_003403218.2 other downstream 703463 17278467 ~ 17280328 (+) False LOC113531069
TU460582 other downstream 707040 17282044 ~ 17289481 (+) True rpl36a

Expression Profile