RNA id: XM_026921796.2


Basic Information

Item Value
RNA id XM_026921796.2
length 912
RNA type mRNA
GC content 0.48
exon number 4
gene id LOC113531220
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 16067203 ~ 16069808 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agtTATTAGTTGACTGCAAAAGAAACCATTGCTGTTGATACATTTGTATAAACAATGCGGAACATGTGCGTAAAGTTTTGGGACTTTCCTCTGATCTATATCAGGGTGTTCTGATCAGGAAATCACCGTAATCGTGAATCTTATGACAATGAGACACACATGGTTCTTCTTTCACTCCTCGACATGCTGCGAGCAAGAAGGAAGAAGGTGACCATTAGCGCGAGCGGTGCTGAACACAGCGCGAGGACGAGACGCTCGAGAGTAAAACGGTGTAGTGAGGAAAAAGACGGAAAGGACCCTGGAATGGGAGGAGCAGGTACATGTTTTCGAAGTGTCCTGTCTTTCTTAAACGGATAGTGGtttcatcACAAGAAGCTGATCCACCCAACAAAGAAAATCCCACATTATTGCAGACAACAGTGAAGGTCAGGTCTACGAAGACACTGCCACTGCCTGAGGAGCTGGATTACAGCAAAATGTGTCCAAAGTGTTCCTCCTTCCTGAAGCCTGCAGTGGTTCCAGCAGGACATACCACTTCACTACAGCAGTGCCCACGGTGCTCTACCACACCATTGTGTGAGCATTGCCTGTACCCTTGCCCTGACAGCACCTGTACCAACCAGTCATGCCAGGTTGTCTCTATGCTGCTCACCTGTGACCAAGTTAGGGATCCGAACAGCCGTGTGTATGGCTGCCCTCTTTTCCGAGCCTGCCCCAAATGTCACAGTATAATGATGCACCAGTCAGGGTGTAAGTATGTGAGTTGTGCACAGTGCAGGCATATATACTGTTTTATCTGCCTAAGGATCAAACAAGAGTGCGTAAAGGACACAAACAAGTACTGGTCCCTGACCTGCTCCGCACCCAGAGCAGCACGGCAGAGATTTCAAACCTGACGAGCTGGACAAATGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_003403226.2 lncRNA upstream 29097 16035231 ~ 16038106 (+) False LOC113531248
TU459553 lncRNA upstream 80161 15942086 ~ 15987042 (+) False G387707
TU459551 lncRNA upstream 80161 15971935 ~ 15987042 (+) True G387707
TU459537 lncRNA upstream 126142 15938930 ~ 15941061 (+) True G387704
TU459501 lncRNA upstream 255543 15807549 ~ 15811660 (+) False LOC113531170
TU459763 lncRNA downstream 23658 16093466 ~ 16094779 (+) False si:ch211-284e13.4
TU459774 lncRNA downstream 27557 16097365 ~ 16097567 (+) True G387896
TU459824 lncRNA downstream 72202 16142010 ~ 16142239 (+) True G387933
TU459814 lncRNA downstream 73134 16142942 ~ 16210315 (+) False lrch2
TU459828 lncRNA downstream 147229 16217037 ~ 16217667 (+) True G387937
XM_026921780.2 mRNA upstream 3500 16058113 ~ 16063703 (+) True si:ch211-284e13.6
XM_026921712.2 mRNA upstream 10210 16040714 ~ 16056993 (+) True gucy2d
XM_026921713.2 mRNA upstream 10210 16040714 ~ 16056993 (+) False gucy2d
XM_034300912.1 mRNA upstream 10210 16041878 ~ 16056993 (+) False gucy2d
XM_026921721.2 mRNA upstream 46733 16008522 ~ 16020470 (+) True slc12a9
XM_026921710.2 mRNA downstream 7281 16077089 ~ 16096184 (+) True si:ch211-284e13.4
XM_034300954.1 mRNA downstream 7281 16077089 ~ 16086323 (+) False si:ch211-284e13.4
XM_026921730.2 mRNA downstream 38757 16108565 ~ 16118052 (+) True LOC113531178
XM_034300470.1 mRNA downstream 38757 16108565 ~ 16118052 (+) False LOC113531178
XM_034300471.1 mRNA downstream 38757 16108565 ~ 16118052 (+) False LOC113531178
TU459555 other upstream 28598 16034823 ~ 16038605 (+) True LOC113531248
XR_004577401.1 other upstream 699956 15361358 ~ 15367247 (+) True fkbp6
TU457943 other upstream 2239055 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 2243148 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 4756350 11297980 ~ 11310853 (+) False ajm1
trnam-cau_49 other downstream 78552 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 476333 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 585861 16655669 ~ 16657113 (+) True LOC113531241
LOC117596262 other downstream 1205691 17275499 ~ 17276968 (+) True LOC117596262
TU460579 other downstream 1208082 17277890 ~ 17280519 (+) True LOC113531069

Expression Profile