RNA id: XM_034300491.1


Basic Information

Item Value
RNA id XM_034300491.1
length 2335
RNA type mRNA
GC content 0.44
exon number 8
gene id crfb12
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15321665 ~ 15331023 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TGCATAACCCGAGGCAACTGaggctgaagatgaaaaaagtTCCAGTGAGATGCTTTGTGCTGCTACTATGCGCAGCTGACAGATTATATCAACGATAGCCTCTGACAGAGATCATTCATCTTGAGTGCCGTCTGAGCCAGGAATCGTGCGCACCCTATGTCAAATAGGTGCACACTCGTTCTCCTTCAGGTGAATCTCTTTCTGATGGCGACAGGGTATTCGCTTCTTCTTCGTGATGAGCCTTAAAGCCTTGATATCCGTTTTTTTTTGAACTGACCAGCCTCAACATGCTGCTCAAACAAGCCAGGTCTGGGATGTATATTCCCACTTTTACACTAACACATGCATTTTGAAATCAAGCAGGATTTTAGAGGTGACTGACTTTTGGCATAAATGCGATAATGTACAGTGCACAGTATTGTATTGCAGAGCAGAAATCGTCTTCAGAGGCTCGATGGAAGCTCGGCATGATGGCGTGCTTGGTAGCCACTGTTTTGGCCCTGCTCCTGAATTATCTAGTATCATCTGAAGGTGCTCTGTCTCCTCCACTCAACCTGAGTGTGGAGTTGCTGGACTTCAAGGCTTTGGCTCGCTGGCTTCCTGGACGAGGGAACCCAAAAGGAACCAGATACTCCCTCGAGTTTATAGACATTGGCCATTTCTCAGTGTCACCATGGTATCAAGCCAGAGACTGCACGAATATCACCTCGACCAAATGCTACCTGTTCCTCAACCAGAGAATTCTGACAGAGCATTTTGTGAGAGTCGCAGCAGAATGGAAGGAAGAGCAGTCAGAATGGACGTGCCTGCCACGTAGCTTTCAGCCATATGAACACACTATCCTGAGTGCTCCAAATTTGACCGTGTCTGTTGAACAACATTCCATATGGATTTCTCTCAGCCATCCAGTCCAGTCACTGACAGACGTGCGGATGAGATTTTCTGTTGACCTTTATGAAATGACCTCTAACAACACAGCAAAGaagCATATTGCACAGAATATAACTACAAAGTCATCCCGCTTTATAAATCTGCCATCTGGGAACTACTGCATCAATGCTTCTGCTTTCCTTACAGCGAGGTCCAAATGCAGCAACAATGCcaccatgtgtgtttttttgcatcAAGATCACAAAGAAGGAAAAGTATGGGTGGTAAATGTGGGTGTCCTTCTACTGCTGTCCATTCCTGCTGTGATTGGTTTGATTATTATGTACTGCTACGTGAAGCCATATGGCAACAGCTACATTCCCAAAGTTCTGCATATTAGGACCATTCCAGTTCCTTCTATAACACTGAACTCTGAGGAACTTCCACTTTCCCGGATTTGCAGAGATGACTGCAAGGCTGCGCATGAGGAAGTGGATGAGAACTCATCTCAGGGCTACTATGGGGGAGTCACAAGAAAAGTGGTTAGACGTGGGTCTGTCGAAAAGATAGAGGATAGTCTCCTTTCCCAAATCGTGGACGAGGCAGATCAGAACGTGCCTCCAGTCCCTGATTTGTATAGCACAGCGGCGAAGATGGAGGAGACCAGTGAATGTCTAACACAGACGGGATGTCATGCTTATGGCTTGACACCAAGAACCTCATTCTCAGACATAAGTCTACCAAGTGCTGCGTATGGGCAAAATACGGAGATCGAAAATACTTTAGACTCTGAACTAGACATGTTTGATGAAGAAAACTCCAGGTCCTCTTATTATCCTGAGCAAAATGACTCATctgaaggagagacagacagtccgGATCCTGATTTCGATTTCGGAAGCAACTATGAGCCCAGACCTGACCCACGCTGGATGTCCAATGTAGGTCACAACGTTGAACAATGAAGTGTACAATATTCAAAACTCATACATGGTGCTTTTTTGTGCTCATCTTCACAACCCAGCTAAAGTATGCAGCTTTGGGTGGAATACTGGGGTGGTTGAATACAACATTTGGACAaccacaacaataacaacaacactgAAAGTGAAACAATTTGGACTTGACAAATTAActgtcatgtttgttttatagaTGTTTGGCAACTTTTAATTAATGGTGTACAGAACTATCCGGGCCACAGGCGTGTAGTTAATGAGTGTAATAAATTATGCACGTCATAACAAAAGTGCATATTTCATTCATGTCGAAGTGATTTAAGGCCAACATATCGTACGAAAGTAGCTTTTTGTGAGCAATTTGTGAGTGCAAAGGTATGCACAAAAGCTACATGAGTAATAGCTCCCCCTTGTGGAGCATTTTCAGCCTGCTAAACATTAGCGAAAGTGCATCTGTGAATGAATTCCAAACTATATACAttatgtgctttaaaaaaaaaaaaaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU459165 lncRNA upstream 47588 15261641 ~ 15274079 (+) False sik2a
TU459163 lncRNA upstream 51758 15266107 ~ 15269909 (+) True G387388
TU459161 lncRNA upstream 103557 15215977 ~ 15218110 (+) True G387386
TU459157 lncRNA upstream 113770 15205754 ~ 15207897 (+) True G387383
TU459153 lncRNA upstream 117080 15203463 ~ 15204587 (+) True LOC113531625
TU459288 lncRNA downstream 23527 15354550 ~ 15361017 (+) False zgc:193711
TU459304 lncRNA downstream 39539 15370562 ~ 15370773 (+) True G387504
TU459313 lncRNA downstream 59596 15390619 ~ 15390835 (+) True G387513
XR_004577392.1 lncRNA downstream 392822 15723845 ~ 15731883 (+) True LOC117596225
TU459481 lncRNA downstream 440021 15771044 ~ 15771244 (+) True G387659
XM_026922277.2 mRNA upstream 310 15314107 ~ 15321357 (+) True si:dkey-71l1.1
XM_026921543.2 mRNA upstream 11996 15304603 ~ 15309671 (+) False gig2p
XM_034300759.1 mRNA upstream 11996 15305896 ~ 15309671 (+) True gig2p
XM_026922534.2 mRNA upstream 59931 15245005 ~ 15261736 (+) True sik2a
XM_026921854.2 mRNA downstream 10683 15341706 ~ 15343570 (+) True mia
XM_026921853.2 mRNA downstream 12615 15343638 ~ 15346909 (+) True c27h11orf1
XM_026921852.2 mRNA downstream 19517 15350540 ~ 15353723 (+) True hspb2
XM_034300493.1 mRNA downstream 23337 15354360 ~ 15361054 (+) True zgc:193711
XM_026922033.2 mRNA downstream 30336 15361359 ~ 15366736 (+) False fkbp6
TU457943 other upstream 1493519 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 1497612 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 4010814 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 4942002 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 5553631 9765740 ~ 9768036 (+) True G384178
XR_004577401.1 other downstream 30335 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 703800 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 817337 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 1215118 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 1324646 16655669 ~ 16657113 (+) True LOC113531241

Expression Profile