RNA id: XM_026921858.2


Basic Information

Item Value
RNA id XM_026921858.2
length 1590
RNA type mRNA
GC content 0.44
exon number 5
gene id ttc33
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11461703 ~ 11517053 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TAAACCAGGCAGAGGAGGCTGATCGGATAACTACAGCAAGAAGAAATAGCTTCCGGTCCGTCCTGCTTCTGCAGTAATACTTCCGGGTTCAGTTCGATGTGGTATTAGTTAGGAACCTCTGCAAAAACGATGGCTTCATTTAGCTGGAATAGGAAGATTGGGGAGAAGGTTTCTAAGGCAGCAGTGCAGCAGTTTGAGGCAGAATCAGCAAACGTGGAGGATAATATGGAGCTGGAAGGAGTTGATTGGCTGCATGCAATCAAGCGCAGGCGTGAGGTACTGCTGGAGGACTGTGCAGCCAAGAGTAAGAGACTAAAAGATGAGGGAGCACTGTTGGCTGAGCAAAGCAGACACTGGGAAGCGGTGAGGAAATGGGACGAGGCCATTCAGCTGACTCCAGAAGAAGCTGTCCTTTATGAGATGAAATCACAGGTGCTGACCATACTTCAGGAGGACTTCCCTGCAGTGCAGGCAGCAGAGACGGCAGTCAAACTTCGTCCTATGTGGTGGGAGGCATGGCAGACTTTAGGTCGTGCCCAACTAAACCTTGGAGAGGTAGAGCTTgCTGTACGTTCCTTCCAGGTGGCACTGCACCTCTACCCATTAGAGCACCCTCTGTGGGAGGAAGATTTGAGATGGGCACTGCATCTGCGGGAAGAGAAACATGCTATGCAGCAGAAAGGTGCACAGGATGATCAAACTCAACAACTTGTGGATGAATCCCCAGAGCTGCAGCAAGATTACGGGGACTTTGAGTGTGATGAGGTCATAGCTGCCTGCACAGCCATAGCAGACCGCAAGAACAGATACGAAAAGTTAAAGAAGAATGTCATTGTGGATTTGCAAGATGTTGCCAATGAAATGGTAGTCAGGAATTCTGACATAAATGCTTCAAAGTATATTTTGGTTAAAGCaagaataatataaaaagtgACACATTGTTGAATTATTCttcattaaatgttaatttgcATAGAATATGCATAATATGCATAGAGGATCATTTTATCTTTGGAGTTATTGGAGTGCACATACTGTATTGGATCACTAGTCTCTAAGGGCACTGGCTCACTTTGAGCCTCAGGGCTCAGGTAAACAGGTcacattcaccaaaaaaaatgtcatctgcAACCCTAAATACATgtcatgtttggttcacttcctgtattagTGTCACTTCAGGGTTGAATCACTTACTCACTGCAGTGAAACTGTGCTACTTTGCGAACAACACCATGCCATTCATACACACTCAGATTATTTTGGTCTGCACCTGAGTCCaattgctgtgttctcatctGCCCAAATGAACTATACCAAGAGGAAAAACCGCAACAGGGTTCAATTCaaatacacactgcactgttaaAATCAGCTCTTCCTACCCTGATTCATTAGACATGTTTGTGTAATATGATATttaatgtgtataaataatcACTGAAATTGTGTGATGTTAAATCGTAACCGTGACTTTAGTctttatccgtaagcatggtattagcttccactgttacgctgatgacacacagttgtatgtttcagcaaagccagatgacagacaccagcttaataaagttgaggaatgtg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456456 lncRNA upstream 72188 11385508 ~ 11389515 (+) True G385025
TU456445 lncRNA upstream 113887 11347602 ~ 11347816 (+) True G385014
XR_004577453.1 lncRNA upstream 117108 11330733 ~ 11344595 (+) True LOC117596271
TU456412 lncRNA upstream 150692 11297974 ~ 11311011 (+) False ajm1
TU456419 lncRNA upstream 175938 11285326 ~ 11285765 (+) True G384989
XR_004577406.1 lncRNA downstream 109666 11626719 ~ 11640005 (+) False LOC117596234
TU456631 lncRNA downstream 109670 11626723 ~ 11640040 (+) False LOC117596234
XR_004577407.1 lncRNA downstream 109696 11626749 ~ 11640005 (+) True LOC117596234
XR_004577408.1 lncRNA downstream 110608 11627661 ~ 11640005 (+) False LOC117596234
TU456656 lncRNA downstream 152440 11669493 ~ 11672040 (+) True G385187
XM_026921450.2 mRNA upstream 135648 11297980 ~ 11326055 (+) True ajm1
XM_026921453.2 mRNA upstream 135648 11297980 ~ 11326055 (+) False ajm1
XM_034300913.1 mRNA upstream 135648 11297980 ~ 11326055 (+) False ajm1
XM_026921451.2 mRNA upstream 135648 11297980 ~ 11326055 (+) False ajm1
XM_034300914.1 mRNA upstream 135648 11297980 ~ 11326055 (+) False ajm1
XM_026921841.2 mRNA downstream 126070 11643123 ~ 11681971 (+) True ptcd2
XM_034300614.1 mRNA downstream 127041 11644094 ~ 11681971 (+) False ptcd2
XM_026921977.2 mRNA downstream 200965 11718018 ~ 11832595 (+) False fcho2
XM_026921975.2 mRNA downstream 201681 11718734 ~ 11835044 (+) True fcho2
XM_026921976.2 mRNA downstream 201682 11718735 ~ 11835040 (+) False fcho2
XR_003403209.2 other upstream 150850 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 1082038 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 1693667 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 2090173 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 2090566 9371060 ~ 9371137 (+) True LOC113531672
TU457909 other downstream 2304735 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 2308797 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 3844305 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 4517770 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 4631307 16148360 ~ 16148432 (+) True trnam-cau_49

Expression Profile