RNA id: XM_026921871.2


Basic Information

Item Value
RNA id XM_026921871.2
length 3707
RNA type mRNA
GC content 0.42
exon number 11
gene id sh3glb2b
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7565787 ~ 7603329 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GTTAACCCTGCACTAGGGTAGTGTGCTGAGCAGGTGTGCACTGCTTTGCGGTTTGGGACGTGACCAGGACCGTGTCCCTTTAAACAGGCTGTGTGGATGATGACCGATGTAACTGATGAGAAGGCGGATTAGCGACACTCTTCCTCCAGTCcgcttcactcactcactccatctatccatccatccctcgCTGTCGTCAGCTCGGCTCCCGCTGCAGGAACATTAGCCCGGCCCATGTAGGCTTGGATCATGGACTTCAACGTGAAAAAACTGGCGTCTGACGCTGGCGTCTTCTTCACGCGCGCCGTTCAGttcaCGGAGGAGAAGCTGGGTCAGGCAGAGAAAACTGAACTGGACGCTCATCTGGAAAACCTGATCGCTAGAGGAGACTGCACTAAGAACTGGACAGAGAAGATCTTCAGGCAGACTGAGGTGCTGCTGCAGCCAAACCCTAGTGCCCGCATTGAGGAGTTCTTCTATGAGAAACTGGACAGAAAGATCCCAACAAGAACCACCAATGGTGAGCTGCTGGGACAGTACATGCAGGATGCTGCCAAGGACTTTGGACCTGGAACTGCGTATGgAAGTACTTTGTACACCGTAGGAGACTATCAGAAGAGGCTAGGAGGCGCAGAGAGAGAGTTCTTACAAGCATCAGCTGTCAGCTTCCTCACTCCTCTCCGGAATTTTCTAGAGGGTGACTGGAGAACCATATCGaaagaaagaaggctTTTGGAGAACCGCCGCCTTGACTTGGATGTCTGCAAAGCACGCCTGAAGAAAGCCAAGCTGGCGGAAGCCAAGGCTGCTGCTGCACCTGATTTTCAGGAGACTAGGCCCCGCAATTATGTTCTGTCTGCCAGTGCATCTGCGCTGTGGAGTGAAGAGGTGGACAAAgcAGAGCAGGAACTGCGTGTGGCTCAGACTGAGTTTGACAGACAAGCTGAAGTGACCCGTCTCCTCCTAGAAGGCATCAGCAGTACACACGTAAATCATTTGCGTTGCCTGCATGAATTTGTGGAGGCCCAGGCAGCTTACTATGCCCAGTGTCACAAGCACATGCAGGATCTTCAGAAAGAGCTCAGTAGGTTTCCCAATGCCTTTGCTGCTAACCCCTCCGCATCAGCGATTTCCACTTCCTCTACTCTGTCCAGTGCTGCTGTGCCTGGGGTCTCCCCTCCTGCTGCCTCTTCCAGCTCTCTGGACACACTGAAAATTGAGGAGGTGAAGCCTCCAGCCACTGGCACACGCAAGGCCAAAGTGCTGTATGACTACGACGCTGCAGACACAAGCGAACTCTCGCTGCTAGCTGACGAGCTCATTACAGTCTACACAGTCCCAGGCATGGATCCAGACTGGCTCATCGGAGAGCGGGGGAATCAGAAAGGCAAGGTGCCGGTTACGTACCTGGAGTTGCTAAGTTAAAtgctcaaacacaaacacaaacacccatGCACAGACAGGTATTTGCACATGGGAAGATGGGAAGATGCAAAGGTACCCTTACAGACACCGTTTCAATGTATTCCTGTATTCCCCAATGTATTGTTGGGGTCAAAATTAGTTTGTGGGAACGTAATGGAAAATTTGCATGAGCAAAACTATTCAAACAGACCTGAACACTCTGGGACTTCATATATTTTGTGTTAGCTAGGTTCAGCTCATTCATTCCTAACCCATACATTTAAAAAGGCCTAAGAAGTCAGCTTACTGTGAGGCATTTCATAAGGATATGTTTAAAGATCTCAGCTTCCAAGACACTGCAAAAATATAGATGTAGAACGTAAATATGATGCAGAAACATCCTGCTTCTGGTCTGCGTCATGTGACACCTGTGTCTTTGTGCATCCCCTATGCACATCAGAGATATTCCTGTGATTATTATCGACACTGCAGGTTTTCTgtttcaaaaactgaaaaaatgttaAGTATTTGAATCGCAGTTTGATTATCAAAGAGTGCTAAATACCATCAGAGTTCAAAAACTAACTAGGAATCAAGGAACTCTACATGTAGAAATGGAAAAggtaatagaaaaaaattgaaatattagATTTTCTAATTGCCTTGTCTTtccttttaaattaatttaccaACTAGCTTGTTTTTCTTTACCTCTGTTTGCCACCGCGGTTTAGTTACAGTTTAGTCAAATCAGAATAAGAGACATATTATTATATGGTAGTTATATAGTGGATCACCCTTCATGTCAAtccattataaatatttattaaaggaataaaacactatggagcctgggtaaaatgtaaaatgaaaataatcaaccacctcaaagctgattattttcctctaaatgCATGCCTGAAGTACagctcttataccactgcaatttgccaactattacagtttttccttatttaagtacgatatttatatttctaatcAGTTTAGAGCTACCTTTAAGTCCACAAAACACACTAGATcagatataaacagtcgctcccccCTTTtacttgaaattaataagacagaaaaagtgcagcttgttactgagaaaccgcagtGCAACGTCCTTCACTTTATCCGCTTTACCTCTGTCTGttactggcactggagactccttctgtaaatgttaaataaacatctccttactgtttttgtttgttaaataacgtttttttttaatctgtttataattagaTTATGTGGCTAATTTGGCATAAAGGAATTAATTGTTGTGACtaatcaaatttgagaattcaacaatgctatGGTTTAATATTGCTTCCACCACAAACCTCCCAACAAGCAATATGACACTGGGCATCGTTCTACTTTTTCCTCCATTGTTCTTTTCCCTTTGAGAATTTAGGGAGAGTGTACTCACTTGAAGGGTGAGTCACAAAGGAAAATGATAACAGTTGGAAATTCCCTTCCCATGTACATTCCGTATTACCTTTTCCATTCCTTGATCCATTTACAATTTCCAATTGCTTTTGGCAAAACACATAACCTGGATACATTTCATACTAAATTGGAGAAATCCCACTGATGACAAAATTTAGTGAGAGTGTAGACATAATCTGTTCAGAGAAAAATAATTGTCAATCGTATGAGGTCTAAAGGCTAACTCTTCCAATTTGATGTCTAATTTAAACATtcagtttaaaatattctgcCTGTGTAGCCTTAAAAAAGCATCTGGATTACGAAATATTCCCTTGTGtcctaaataacattttatgtgtgtgtgatttttttttaaaaccaatttttctttctatctgcATCTCACCCAGTTAGAAGAAGCTATTTAAAGAACACTAACATTAGCTTATTTACATCATGTTGTGATGAAATtggtagtgtttgtgtgtttttgtgtgtttttattttattgcctgAAACTAGGTTGTTTTAAAGTGGCAGGAAAAACTGGTTTAGACCTTGGCTATCTAAGAAGTGTCTTCATTTGAATTCGGTGTGACTGTAACTTTGGCAAGATATGCATTACGTGTGGTTTATGGGACTatagtttgtaaatgtttctcAGAATGGGTccaattatatttaatgtgatatttcatTTATGTTCTCCAGTTACTACCCTGTGAACACCATTACTCTCCCATTTttagtctttctttcttcatctgtGTAACTGATgcttgtttaaaaagaaaaaaattaagcaatgCATACTGAATGACTGAAACTTGAACATAATAAAGAGAGCTTTATTGAAA

Function

GO:

id name namespace
GO:0005737 cytoplasm cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453732 lncRNA upstream 21705 7538414 ~ 7544086 (+) False dpm2
TU453724 lncRNA upstream 65206 7497766 ~ 7500585 (+) True G382686
TU453699 lncRNA upstream 115346 7448911 ~ 7450445 (+) True G382667
TU453677 lncRNA upstream 177555 7386510 ~ 7388236 (+) True G382646
TU453653 lncRNA upstream 304701 7260253 ~ 7261090 (+) True LOC113531088
TU454007 lncRNA downstream 42807 7646136 ~ 7646471 (+) True G382929
TU454009 lncRNA downstream 45980 7649309 ~ 7649523 (+) True G382931
TU454010 lncRNA downstream 46292 7649621 ~ 7650073 (+) True G382932
TU454022 lncRNA downstream 59538 7662867 ~ 7665688 (+) True G382942
TU454164 lncRNA downstream 302005 7905334 ~ 7909226 (+) True G383067
XM_026921559.2 mRNA upstream 2111 7546460 ~ 7563680 (+) False pip5kl1
XM_026921878.2 mRNA downstream 14650 7617979 ~ 7620332 (+) True LOC113531275
XM_026921527.2 mRNA downstream 167569 7770898 ~ 7797351 (+) True p2rx1
XM_026921529.2 mRNA downstream 167569 7770898 ~ 7797351 (+) False p2rx1
XM_026922291.2 mRNA downstream 496518 8099847 ~ 8104105 (+) True LOC113531515
XM_026921471.2 mRNA downstream 539254 8142583 ~ 8161257 (+) True spns3
XR_003403275.1 other upstream 288064 7277599 ~ 7277727 (+) True LOC113531673
XR_003403276.1 other upstream 288818 7276845 ~ 7276973 (+) True LOC113531674
XR_004577432.1 other upstream 507592 6962210 ~ 7058199 (+) False LOC113531592
TU452818 other upstream 1182131 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 1323094 6223168 ~ 6242697 (+) True G381893
TU454294 other downstream 539282 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 579062 8182391 ~ 8213107 (+) True G383217
TU454617 other downstream 987038 8590367 ~ 8591155 (+) False gig2o
TU454806 other downstream 1161573 8764902 ~ 8775134 (+) True G383625
XR_003403287.2 other downstream 1765160 9368489 ~ 9368564 (+) True LOC113531685

Expression Profile