RNA id: XM_026921894.2


Basic Information

Item Value
RNA id XM_026921894.2
length 1569
RNA type mRNA
GC content 0.47
exon number 10
gene id ptpa
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9743409 ~ 9761838 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCAGTAAACATGGCGGAGACTGAGAAGCAGGCGCCTCTCCTGAAGATGACGGGCCTCCCCTACCTGCCAGCTACACCTTCATGGTGCCTAAGAAGGAGATCAGCATGGTGCCTGATATGGGCAAATGGAAGAGATCTCAGGCGTACGCAGACTACATTGGATTCATTCTAACTCTGAATGAGGGGGTGAAGGGGAAGAAGCTCACGTGTGATTATCCCGTTTCAGAGACAATAGAAAAGTTGCTGTCGCTGTTGGGAACTCTGGATCGCTGGATAGATGAGACGCCACCAGTGGACCAGCCGTCGCGCTTTGGCAATAAGGCTTACCGAACCTGGTACGCCAAACTAGAGCAGgaggcTGAGGCTCTGGTGGCTGCTGTTCTTCCTGATAAACTCAGTGCTGCTGTTCCAGAGGTCGCAGTGTACCTGAAGGAAGCTGTAGGCAACTCTACAAGGATTGATTATGGCACAGgtcaCGAAGCTGCCTTTGCAGCATTCCTCTGCTGCCTTTGCAAAATAGGAGCTCTGCGAGTGGAAGACCAGCTGGCCATCATTTTCAAAGTCTTTGACAGGTATCTGCATGTGATGCGGAAGCTGCAGAAGACGTACCGTATGGAGCCGGCGGGGAGTCAGGGCGTGTGGGGGCTCGACGACTTTCAATTTCTGCCCTTCATATGGGGCAGTTCCCAGCTCATAGATCACCCCACTCTGGAGCCACGGCATTTTGTGGAGGAGAAGGTGGTGAACGAGCACCATCAGGACTACATGTTTCTGGAGTGCATTAAATTCAtcaatgagATGAAAACGGGACCCTTTGCTGAGCACTCGAACCAGCTTTGGAACATCAGTGCCGTTCCCTCCTGGGCCAAAGTCAACCAAGGCCTTATACGAATGTACAAGGCTGAATGTCTAGAGAAGTTTCCCGTCATCCAGCACTTCAAGTTTGGCAGCCTGCTCTCCATCCAGCCCGTGAAACCATGAATGACAGCAGGAAGAACCAGTCTGAGAGCACAACCGATTCTCAACCAATTCAACGAACCACCCAAATCGCCTAGCCACCATCCAGCGTTCCAAAGTTTCCCCACTGCTTAAACGAATAAATGCGACTACAGTCAAAACCCTACTTCTAACAGCAGTTCAGCATGACTGCCTCCCCCTAAATTATAGAATTCACATGAGGATAAATTTCTGTCTCCTTAGTCTGGGCCCAAGAAATAGAGTGTAAGAATAAATATAGTCCATGGCACCATAATTAGTATCTTAAAAATTTGCAGTATCCATAATTCATATCCATAATTTATGAATATGTACATATGAAAAGTAAAGCTTGCCTGATCTGATAAGTCTTGGTTTTTATTTGATGTACTAGAAAACAGGCAATGGGTCCGTTTTTCCATTTAGACTGTAATGATCCTTGACAAATtgatgatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcacttgctTCAAAAACAGTTACTCGTGTGGCCTGTATGTgctgtaaatgtacatttttgtcattttgtcactaGGATTAATAAACTGTCAGCCGTTTTAGTCTTGAA

Function

GO:

id name namespace
GO:0043085 positive regulation of catalytic activity biological_process
GO:0019211 phosphatase activator activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455437 lncRNA upstream 56852 9682313 ~ 9686604 (+) True G384144
TU455438 lncRNA upstream 56852 9682313 ~ 9686604 (+) False G384144
TU455439 lncRNA upstream 56852 9682313 ~ 9686604 (+) False G384144
TU455422 lncRNA upstream 182082 9561135 ~ 9561374 (+) True G384134
TU455412 lncRNA upstream 216938 9526311 ~ 9526518 (+) True G384125
TU455489 lncRNA downstream 29306 9791144 ~ 9791911 (+) True G384182
TU455490 lncRNA downstream 32245 9794083 ~ 9794859 (+) True G384183
TU455496 lncRNA downstream 42744 9804582 ~ 9805004 (+) True G384189
TU455504 lncRNA downstream 51647 9813485 ~ 9813691 (+) True G384197
TU455519 lncRNA downstream 73866 9835704 ~ 9835912 (+) True G384212
XM_034300525.1 mRNA upstream 36341 9687039 ~ 9707115 (+) False lrsam1
XM_026922092.2 mRNA upstream 36341 9687790 ~ 9707115 (+) True lrsam1
XM_034300523.1 mRNA upstream 36341 9687790 ~ 9707115 (+) False lrsam1
XM_034300524.1 mRNA upstream 36341 9687802 ~ 9707115 (+) False lrsam1
XM_026921577.2 mRNA upstream 62020 9677303 ~ 9681436 (+) True pole3
XM_026921569.2 mRNA downstream 218462 9980300 ~ 9987624 (+) True ntmt1
XM_026921570.2 mRNA downstream 218473 9980311 ~ 9987628 (+) False ntmt1
XM_026921571.2 mRNA downstream 222199 9984037 ~ 9987628 (+) False ntmt1
XM_026922347.2 mRNA downstream 243158 10004996 ~ 10042974 (+) True gpr107
XM_034300715.1 mRNA downstream 291955 10053793 ~ 10092897 (+) False ncs1a
XR_003403285.1 other upstream 371926 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 372319 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 374128 9369261 ~ 9369328 (+) True LOC113531687
XR_003403288.1 other upstream 374553 9368831 ~ 9368903 (+) True LOC113531686
XR_003403287.2 other upstream 374892 9368489 ~ 9368564 (+) True LOC113531685
TU455483 other downstream 3902 9765740 ~ 9768036 (+) True G384178
TU455978 other downstream 616375 10378213 ~ 10379665 (+) True G384593
XR_003403209.2 other downstream 1536142 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 4059950 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 4064012 13825850 ~ 13828148 (+) True G386325

Expression Profile