RNA id: XM_026921928.2


Basic Information

Item Value
RNA id XM_026921928.2
length 4026
RNA type mRNA
GC content 0.49
exon number 23
gene id LOC113531298
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6633970 ~ 6653902 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGGAACGCGAGTAGGAAAAGCGTTCAGTTAGGCGGGGAAGAAATTTTGTCCTTCACAGTGGAATTTTCTGACTCAGAAGCAGGAAAGTGGAAGAGCGGTGTGTTAATGGCGGGGCTGTGAGACTAGGAACCGCTGAAAACGGGCTTTCTGGACAGTCCTGCCTCTTTGTACTATGGCAAATGTCAAGCAGAAGCTTTCATTCAGGACTGAAAAGGTGTCTCGAGACAGAACAGATGCTGAATCTGTGAGTTTTGAACTCACGAGACGTCCTGGGAAGgtaaacagagagacagagcggcTCCAAGCCCGCAGAAAGTCTCTCAATGACTCACTAGAAGGAGACATCAGAAATTTTCTAGTAAACGAGGCTGAACTCCACACCTATGATGACCTGACCAAAGTCAACCCTGTAACCCCAaccacagTGCTAAAATGCCTGCAGGCACGTTACAGTGCgaaagtgttttacacacacgcCGGCTGCACGCTGGTGGCACTGAACCCCTTCCAGCCCATTCCTCACCTTTACTCGCTGGACGTGATGCGCGAGTATCACTCAGCTTCCCAACCTCAGgaCTTTAAGCCGCACATCTTTATCGTAGCCGAAGAGGCATACAGGAACGTTCAGGGCCAAGTCGAACCTGTCAACCaatcactagtggtctcagggGAGAGCGGAGCTGGGAAGACGTGGACGTCACGCTGCCTCATGAAGTACTACGCCACAGTGGCTACCTCGTCACAGAAGTGCCAGCACACGGTGGAGTGGATAGAGAGACGAGTGCTGGACTCGAACCCCATCATGGAAGCCtttgGCAATGCTTGCACTTTAcgcaacagcaacagcagccgCTTTGGAAAGTACATCCAGCTCCAGCTGAACAGTTCTCAGTTGCTGGTGGGGGCCTCGGTGCAAACGTATCTCCTAGAGAAGACCAGGGTGGCCTTTCAAGCACCGAATGAGAGGAATTTCCACATATTTTACCAGATGATGAAGGGGGCCACAGAAGAACAGAGGCAGGAGTGGGAGATGCCACGTGACCAGAAGTTTGCCTGGTTGCCAAATGCAGAGAAAACCTTAGAAGAGGATTGCTTCCAGGAGACGGTTGAAGCCATGGTCAGCCTTGGCATTGACGCAGACAAGCGTGCACAGATTTTCAGGATCCTGGCAGGTCTTCTGCAGCTGGGGAATGTGAACTTCAGTCCTGGCCCTGAGTCTGAGCCCTGTGGCCTCGATCACCAGTCCAAAggtttccTAGAGAAGACAGCGGCTCTGTTGCGTGTGCCAGCAGATGAgctgcaggagtgtgtgagcgtACGGATGCTGCGTGCAGGAAAGCAGAGCGCCCTGCTGAAGCCCTGTTCACAGAGCGAGTGTGCTGTGCGCAGGGACTGTCTCGCTAAAGTCATCTACGCACGACTGTTTGATTGGTTGGTCGGCTTCATCAACAGCAGCATGTGCGCAGACGACTCCATGTGGTGCAACTTCATTGGCCTTTTGGATGTGTATGGCTTTGAGTGTTTCCTGCTGAACAACCTGGAGCAGTTGTGCATTAACTACGCCAATGAGAAGCTGCAGCAGCACTTTGTAGCTCACTATCTGAAAGCCCAGCAGGAGGATTACGTGTCTGAGGGACTGCAGTGGTCTTTCATCCGCTACCAAGACAACCAGAGCTGCCTGGATTTGATTGAGGGAAATCCCACCAGCATCTTCTCTCTGCTTAATGAGgAGTGCCGTCTGAACAGAGCCTCCGATGCTAAGCAGTTCCGGGAGCGTCTGGAGAAGGAGCTCTCTGACAACGGCAGTATGAGCTGGGACAAGTTTAGCAAACAGCCTCACTTCATTGTGGCTCACTATGCAGGCAAAGTTAGCTACCAGATCGAGGGCATGATGGAGAAGAATAAGGATCCAGTCCCCCCTGAACTCCTCAGCTTGCTGCAAAAGTCGGAGGATCCTCTGCTGCAGAGTCTCTTTGCAGACTCAGACACTGAAGGAAACCCTCGTGGCCACAGCAAAGTCGTCACTGTCGTCTCCAAATTCAGGAACTCCTTGCAGAATTTGATGAAGATTCTGCACAGCACCACTCCTCATTACACACGCTGTATTAAACCCAACCCCGACTGCAAGCCGCTTACCTTCAAGAAGGAGGAGGTCATCACACAGCTGGAGGCATGTGGAATAGTGGAGACCATCCACATCAGTGCTGCAGGTTTCCCTATCAGGGTTCCCTATGACAACTTTATCCAGCGTTACGGGTTGATCACCAACACCAGACTCCGGGCTCAAGGAGCTGAGACTGGCGATCAGATCGCTCTAGGCCCCGCTGTACAGGACATTCTGAATGCAGTCCTGAGGACCAGTTCCCCTGACCCCGACCTCAcacccaacaacaacaacgtgatggtgcattgtgggaagaCCAAAGTGTTCCTGACACATGCCATGCTGGAGCTATTGGAAGAGCAGAGGCACAGAGTGCGCTCTCAGAAGGCCTTCTCTATCCAGTGCTGCTGGCGCAGACACCAGTGCCGCCAGCAAGCCATCAGGACCAAGTGTGCCACTTTCATACAAGCAGTGGTGCGGGCCTGGCTGGTCAGGAGAGAGGTGAGGAGATGGCACAAAGCTGCTACAGTCATCCAGAATAAATGGCGGTTTTGGAGGGCTTTGATGGACTCCCTGGCTGAGGCGGAGCTGGACAACGCTGAGGATCTGCAGGAAGAAGAACAGGCACGCTCCAGCTTCCCCAAACCTCTAGCAGTCAGCAGCTGGCCTCTGGGCCTGGCTATGACCTTCACCCCGAGCgtcactgtgactctgaccacCACATGTTTCCACAAGGTCATGTCCCTCATGGCCACACTGAAGATCCCCTTCAGGAACGGAGAGTACAAAGTGGAGACCAACCAGTTCAACCATGGCGTGGCCTCCATCCGGGCACAGCCACAGGGCTCTGTGAAGCTCCACATGCAGAGATCTCCTCTCCGCTACGCCGACATGTACCCAGGACCCCACACCGACGAAGTGAGTGGGTTCAATCAGATTCTGCTGGAGAAAACATGAGTCTGTGTATCTGCTACTCCATATCAATCCACTCTAATCGACCAAAGCAAGCGTTACCCAAATCAATGCACCTTCTAAATGCACAAGCAGGAATGAATGCCAGTGAAACCCATAGCTGCCACATCTAATGTAATTCCATTTTGCTGTATATATTCTGTCGGTTAACATGCATGTGCCTTTTGTTAATTACAGTCTGCACACTACTGTAGgctattttatacatatttattctgAGATTATGCTTCCTGCCTGAGgaattcaattttataatcAAAGTCTACTTATCTGGTTTTGATAACactaatatttatttgattagaGATTATTCTTACATGTATTGCTTGAAAGATAAACTGAGAACTGGGGAAAGTTAAAGGGAAACACTAAAGACATGTTTGCACAGGAGATGTAAGTctaaatggggggaaaaaaaatccactactTGATGGCAACATTAGATTCAAAGCATATCAGGaaccaaacatgtcttgatTAATCgactattcctttaattcaTTTGATACATGATCAAACCACAGATTTTGTTTAGGATTTATAACTCGGAGAAAAGGGGGAACATGACATTAACTGGAACATTTCTGTACTGTTTAGTACTGTGTACTTGGTATGTACATTTCTGCTTTATTTCAGGCTTATTgcacagacaaataaaaaacactacTTTTATAGGGAAGAGTAGCATTTATGACTTAACGAGGAATTCATTTCTGTGGGTTTTTActatattttgactttttttcaggtctacatgttaataatatatttatatgtacaatGATCATGTACTGTATTGGAGATCTGGTACATTTTGAGTACTTGACACTGTAATATTCACACTACTCATGTTAAACTTTGGACATTACTTGGCACAAATGTTTGTCCTGTTTCTTATCAAGACTATAAATAAGCTAATAAATTTGCTATGGCATGTTGGATTTGTGGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453190 lncRNA upstream 53360 6579113 ~ 6580610 (+) True G382207
TU453180 lncRNA upstream 57788 6575979 ~ 6576182 (+) True G382205
TU453119 lncRNA upstream 83166 6549802 ~ 6550804 (+) True G382148
TU453117 lncRNA upstream 96739 6537031 ~ 6537231 (+) True G382146
TU453109 lncRNA upstream 120800 6502015 ~ 6513170 (+) True G382138
TU453261 lncRNA downstream 12737 6666639 ~ 6668385 (+) True G382257
TU453282 lncRNA downstream 153277 6807179 ~ 6809541 (+) True G382274
TU453300 lncRNA downstream 156451 6810353 ~ 6810567 (+) True G382292
XR_004577428.1 lncRNA downstream 157216 6811118 ~ 6815375 (+) True LOC117596241
TU453360 lncRNA downstream 297817 6951719 ~ 6954928 (+) True G382351
XM_034300454.1 mRNA upstream 88235 6537778 ~ 6545735 (+) True tbx16l
XM_026921474.2 mRNA upstream 101076 6522164 ~ 6532894 (+) True eral1
XM_034300947.1 mRNA upstream 182537 6436800 ~ 6451433 (+) True LOC113531597
XM_026922287.2 mRNA upstream 201968 6415403 ~ 6432002 (+) True LOC113531512
XM_026922288.2 mRNA upstream 219790 6408024 ~ 6414180 (+) True shpk
XM_026921929.2 mRNA downstream 4151 6658053 ~ 6662250 (+) True c1qbp
XM_026921478.2 mRNA downstream 15030 6668932 ~ 6687976 (+) True LOC113531024
XM_026922170.2 mRNA downstream 37134 6691036 ~ 6773907 (+) True srrm3
XM_026921457.2 mRNA downstream 124090 6777992 ~ 6784388 (+) True hspb1
XM_026921613.2 mRNA downstream 177782 6831684 ~ 6931919 (+) True LOC113531112
TU452818 other upstream 250310 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 391273 6223168 ~ 6242697 (+) True G381893
TU452724 other upstream 453057 6177804 ~ 6180913 (+) True G381835
XR_004577455.1 other upstream 582073 5990022 ~ 6051897 (+) False zmp:0000001168
XR_004577432.1 other downstream 308308 6962210 ~ 7058199 (+) False LOC113531592
XR_003403276.1 other downstream 622943 7276845 ~ 7276973 (+) True LOC113531674
XR_003403275.1 other downstream 623697 7277599 ~ 7277727 (+) True LOC113531673
TU454294 other downstream 1488709 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 1528489 8182391 ~ 8213107 (+) True G383217

Expression Profile