RNA id: XM_026921943.2


Basic Information

Item Value
RNA id XM_026921943.2
length 8057
RNA type mRNA
GC content 0.49
exon number 26
gene id tecta
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9159028 ~ 9185282 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCTTCTCCAGCTCACCACTaaagggacacacacacacaaacacttctctcttctctcatcttGAGATCACTTTTGCAAATCTCTTGCTTTCTAAGCCAAAAGCCAAAACACGCCGTAGGCTCGGATTGGGCTTGATTTACTGGTCTTGTTTTCCTCTGTAATCCTGCATACCTGGACTTGCAGAGTGCTCTTGCGTGAGGGGGTTTAAGGAAGCCTTTCTTGGGTGCCTTCCCCCTCCCCTTTCCCTGGTTCCAGCACAGAACCTGTCCACTCCTAAAACAGTGTGGATGGTACCCAGTTTGATGGGACTGGAAGGCTGATGCCACAGGTGAGGTGCTGAGCTTCTGTCTTCTGAAGACAGGTCTTTAGGATGGTCAAAACAAGCACTTTAGTGTCTCTTCTCCAGCTTTTCAGCACTCTTGCTCCCAGAGGAGctTTCTCTCAGGATATCCTCTACCCCTTTGGACCAGCTCATAGGGACACAGAAACCCCCAAGATGGATGATGGCAGTTCAACGGAAGTTACTCTATTAATTCCATTTATCTTCTTCAACGTCCCCTACCGCTCTCTATATGTAAACAACAATGGCGTAATCTCCTTCAACGTTCAGGTGAGCCAGTTTACTCCTGAGCCTTTTCCCCTCAGTGACAGTCGGTCATTTATTGCTCCCTTATGGGCTGATGTGCACAATGGTATCCGTGGGGATGTGTACTATCGTGAGACCACTGAGCCAGAGATCCTAGCAAGAGCTACTCAGGATGTCAGGAAATATATCAAGAGCATTCCATCCTTTACTGCTACCTGGGCTTTTATTGCCACATGGAACCAGGTCACATTCTACGGTGGCAGTCAGACAACACCGGTGAATACATTCCAGGCAGTGTTAATCTCAGATGGCATGGTCCACTTTGCCATGTTTAACTTTGGAGAAATTACATGGAGCACAGGGACAGCTAGTGGGGGAGATCCTCTGACTGGCTTGGGAGGAACCACTGCACAGTCAGGTTTCAATGGTGGAGATGTCAGTCACTTCTTCAACCTGCCTGGTTCCCGCACAAATGATGTGGTCAACATTGAGCAAACTACAAATGTCAACGTGCCTGGTCGTTGGTTCTTCCGTGTTGACACCGAACAGATCGACCCAGCCAATGGCTGCAGCTATAATGGGCGGTTTTATCGACGTGGAGAGGTGTTCTGGCTGTCAGACCAGTGTTCTCAGCGTTGCAGATGTCTGGATTTGGACAATGAAGTCATTTGCCAGGAGGCTCCATGTGGCCAGTTAGAGACGTGTGAACATCAAGAGGGAGCATACTACTGCCAGCCCACCCGAACCAGCACCTGTGTAGTGTTTGGAGACCCCCATTATCACACCTTTGATGGCTTTCTCTACCACTTCCAAGGTACCTGCTCTTATCTTCTGGCCCGGCCATGCTGGGAGGTGCCTGGTCTCCCATTTTTCAGTGTTGAGGCTAAGAATGAAAATCGTGGTATGACTTCTGTGTCCTGGCTGAAAGATGTCACTGTGGAGGTGTATGGCTATCGAGTTACGCTACCAAAGGGAACTCTGGGCACTGTACAGGTGGACAGTCTCTTGAAAACTCTACCTGTCCATCTCCAGTTAGGGGCTGTTAAAGTGTACCAGTCTGGTCTTGCAGTTGCCTTAGAAACTGACTTTGGGCTCTTGGTAACATATGATGGGCAGCACTATGCTTCCATCTCCCTTCCCAGCTCCTACTTCAACAATACTTGTGGCTTGTGTGGTAACTATAATGATGACCCTGCTGATGACCCTGTGCTGCCAGATGGTTCTTTAGCAGAAAGCGTTGTTGAATTAGGTGGTAGTTGGAGAGCGGAAGACACTGATTTTCGTTGCACAGATGGTTGTGCTCAGAACTGCAGCTTGTGTGAACCAGCAGCTGAAGCTTTTTACTTTCGTCCTGATTACTGTGGGCTCATAAACAAGACTGACGGGCCATTCCGAGAATGTCGGGCTGTGGTGGACCCCACTGCATTTGTCTACAGTTGTGTGTATGACATGTGCAGCAACCGTGATAACATCACAACTCTCTGCCAGGCTATACAGGCATATGCTTTGGCATGCCAAGCTTTGGGAGTAACCATTAGACCCTGGAGGTCACGTACATTCTGTGCTTTAACGTGCCCAGAGAACAGCCACTACCAGGTCTGCACAAGCGCTTGCCCCTCTTCCTGCTCCGAACTGACCTCCCACCTATACTGCACACATCCATGCACAGAGGGCTGCCAGTGTGACCAGGGCTTTGTGCTGAGTGGCAGCCACTGTGTCCGCCGCTCTGAATGTGGTTGTGAACGCGACGGCCTGTACTATGCTCTCAATGAAACCTTTTGGGTAGGTGAGAGGGGTGAGGTGGGCAGCGACTGCTTCCAGCGCTGTGTGTGTGGCCCAGCAGGTGAGGTCACCTGCTTTAATGACTCCTGCCAAGAAGGCGAGGTGTGCACAGCAGAATTGGGGTTGCTGGGGTGTTATCCTCGTAGAGAGGCCATGTGTTCATTATCTCAGACGTACATCTTAGCTACCTTCGATGGTTCATCCATGCCATTCCCAGATGAGAGCTCCTTCTACCTGGTGAAGACTATGGGGCGCCTGCCAGCCAATGTGTCAGCGGTGGAGGTGAAGATTGGAAGAAAGCTGGTGAATAAGGGTCCTACATGGAAGAGGCCTGTGGTCATCAGGGTTGCATACCTGGAGGCACAGATTGGTGGCACTGATTTTGACCTTGTTAAGGTAAACGGGGAGCAAGTTCTTCTTCCATATGTCCACCCAATGGAACCTCTTGTGGTGTATCGTGCTCCTGGCAACGTTACTATCGTGGAATGGACCGGTCTAATTCGGGCCCGTTACTCCCGCCAAGGCTTTCTCAATATCTCACTCTCAACCCTGTTCTACAACTCAACCTGTGGCCTCTGTGGCTTCTTCAATGGAGATCCCTCTGATGACTTACGTTTGCCGAGTGGCCGTCAGGCTGACACGGCTGAACAGTTTGTTGAAGGCTGGAGGGCCATTGCTGATGACCTAACATGCAATGGCGACTGTGACGATCTGTACCGCATGTGCACAGACCTGAGGCTATACCAGAGCCCCTGGCTCTGTGGCAACATCAATGACCCAGGAAACAGCTCATTCCTGGCCTGCCACTTAGCCGTCAACCCCTCACCCTTCTTCAGGAACTGCCTGTATAATATGTGCGTGAAAGAGGGTAACCGCTCAGCTTTGTGCTCTTCCTTGCAGGCCTATGCTTCAGCCTGTCAGGATGCTCAGATCAACCTGGGGCCCTGGAGGAGTGCCACAAACTGCCCACTGCCATGCCCAGAAAACAGCCACTTTGATGAGTGCACTACAGCATGCCCGCTGACTTGTGAAAATCTGGATGAGCCAGAGGAGCCCTGCCCATACCCCTGCTCCGAAGGCTGCCTGTGTGAAGAAGGCTTTGTGCTCCGTGATGGGCTCTGTGTACCCCGCAGTGACTGCGGTTGCTTCTACCTTGGTCGTCAACTAGCCACCAATGACACATTCTGGACTGACTGGGAATGTCAAGAACGCTGTTTCTGCAATGGGACAGACAACAGTGTCTACTGCAACTTTTCTCCATGCCACCCTGAGGAATACTGCCAAGAGACTGAGGGGCTATTTTTCTGCCAGCCTCGGACTGAGGCCCTGTGCGCGGTGGCTGGATATGGGCATTTCTTGCCTTTTGGAGGTGTCCCATTTGACCTCCAGAGCAGCTGCACACTTCGTTTGGTTACCACAGAGTGTGGGGGGCTGGATGAAGATGAGGACAGATATGCAGGGTTGGACAGCAGTTTCATTGCCGAGATAGGACTAGGGGACCTGCCTCGGTTCCAGCTTTCAGCCCGGAATGAGGAGAGAGATACAGGGCAGGCCATCTGGGTGCAAGGTTTTGTGTTGGAGGTTTATGGATATGAGATTGAGGTCTCAAGAAGCTTCAAACATACAGTTATGGTAAATAAAGAGCGTTTGTACCTGCCTCTGAAATTGGGCCCCGGGAAAGTCAACATATACACTCTGGGATTACAGTTACTAGTGGAGACTGACTTTGGACTGAAGGTGGCATTTGACTGGAATACACTACTTCTGCTTTCTCTGCCCCGGAGCATCTTTAATTCCACTTGTGGTCTGTGCCAGGGAATGCCCATCTCTGGTCCTGCCCTCAGTGTCAGCGAATGGGGCATGATGTGGGCAGAGCGTGACACCTTCTGTCAAGTTGGGTGTGGTGACTCCTGCCCACGCTGTGGATTAGTTGAAAGAGGCCTGGCAGCAGATGTCCATGTCCCTGTGCAGACAATGGATGCCATCAACAACAATGACATTGAAAACTCTATCCCAGGAAACCGTTTCCACCTGGCTGAGGGCTTGTACGTTTATGTGGAACCAGAGGCGGTGAGGCTGTGTGGACTTATTATTGACCGTGGAGGTGTGTTTGCGCGGTGTCACAGCAAGGTGGCGCCAGCATACTTTTACCAGAGCTGTCTGCAGGATACATGTGTGGACCAGGGAGCACGAGAGACCATCTGTAATTGGTTGCAGATATACGCTAGTACCTGTCAAATCCAGGGGGTGTCTATGATTGGCTGGAGGAGCTCTACTCCATGTGTGCTGTCATGCCCAGTTAACAGTCACTACTCAAGTTGTATGATGGTGTGCCAGCCCCAGTGTGCCCCAGCACGAGGCCAGAGAGACTGCAACCAGCACTGTGTGGAGGGTTGCCAATGTGATCAAGGTTATGTGCTCAATGGCAAAAGCTGCATTCTTAACCAGAACTGTGGCTGCTATACTGACAGCAAGTACTATGAGCCTAAGCAGCTGTTTTGGAACAACGATTGCACCAAGCGTTGCCAGTGCATTGGCCGCAACTTGATCCAATGTGACCCTCGCCGCTGTAAGGCTGAGGAGGAGTGTGTTCTACGCCATGGTGTCCGTGGCTGCTTCGCCCGTCGCAACCAGCACTGTGTGGCATCAGGTGGTGGTGTTTTCCGCACGTTTGATGGTGCTTCCCTCCGCCTGCCTGCCTCCTGTTCCTTCGTCCTGTCTACTATCTGCCACAAGTTGCCCGAACTCTCCTTCCAGCTCATTGCCAACTTTGACAAGTGGAGCACACCCAATCTTACCACCATCTCACATGCCTACCTCTACATCAATGAGGAGAATATCCTAATTTCTGGGAACACTGTTAAGGTAAATGGGACACCAGTGTCTGTGCCTTTTGTAACAGGCCTGATGACTCGCGTCTCCACATCCGAAGGTTTTCTGGTGATCGACACGCCACAGGACATCCAGGTCCGCTATAACcgtttcaacacacttagtatcACCATGGGACCACGGCTACAGAACaaggtgtgtggtttgtgtggaAACTTTAATGGTGACCCCACTGATGATTACATCACTTCCCGTGGCAAACCAGCAACTAGCGCGCTGGAGCTTGCACAGAGCTGGAAGACCAACGGTATGcagaacagCTGTGATGAAACTCAGTACGTGGCACTGGCTCAGTCCTGTGATAACACAGACATTTTGGAGCTGCAGGGCGAGGACAGCTGTTTGAAACTTACCCAGCCAAAGGGCTTTTTCCAGCCATGTCATGGTCTTTTGGACCCACAACCTTTCTACCAATCCTGTTACCTAGACGGCTGCTACAACCACCGCAAGGCACAGGTTTGCGGCTCTATGGCTGCCTATGCTGAGGCCTGCCGCTCCTTTGGCACACTCACCACCAAGTGGATTGCCCAGGAGAACTGCTCAGAATGGATCTATGACCCCTGTGCAGGGGAGATCTGCACAAACAACACTTGCGAGCAGGAGAATGGAGGAGACCTGTGTGGCTGCCCAGAACTTCCCAGCACAGAAATTAGTGAGGATGATATTATTCAAGCTGAGGTGACATGCAAACATGCTCAGATGGAGGTGTCTATCTCAAAGTGTCGCCTGTTCCAGCTCGGCTTTGAGAGGGAGGATGTGCGTATCAACGACCAGCGTTGCTCTGGCATCGAGGGTGAAGACTTTATCTCCTTCCACATCAACAACACCAAAGGCTATTGTGGCTCCATAGTGCAGTCGAATGGCACGCACATCATGTACAAGAACACGGTGTGGATCGAGAGCGTGAATAACACAGGGAATGTGGTGACCCGTGACAAGACCATCAATGTGGAGTTCTCTTGCGCTTACGAGCTGGACATTAAGATCTCCCTGGAGACAGTGCTCAAGCCCATgctgagTGTAATTAACCTCACCCTCCCCACCCAGGAGGGGAACTTCATCACCAAGATGGCTCTTTATAAAAACGCCTCGTATCGGCAGCCATACCGTGAGGGCGAGGTGGTGCTCAGTACACGTGATGTGCTATTCGTGGGTGTTTTTGTGGAAGGAGCCGATGATTCCCAGCTCATCCTCATAGTGAACATGTGCTGGGCCACACCATCACGCTACAGCAGTGACCGCCTTCGCTACATCATCATAGAAAGAGGGTGTCCCAATATTAAAGACAACACTATTGGCATGGCGGAGAATGGTGTGTCTCTGACCTGCCGCTTTCACGTCACTGTGTTTAAGTTCATCGGCGATTATGATGAGGTGCACCTTCATTGCGATGTCACATTGTGTGACTCCGAGACCAATGCATGCAAAGTGAACTGTCCACACAACAGAAGGAGCTACAGCGACTACAGTCAGCAAAAAGAACACATACTGTCAGTGGGACCAATCAGAAAACGAGAATCAGACTGGTGTGAGGAGGGTAATGGAGGTTGTGAGCAGATCTGCACTAGTCAGGTATCAGGCccagtgtgtagttgtgtgacTGGAATGCTGCAGCGAGATGGGAAGAGTTGCCGTGCTACCAGTTCCAGCACAGATCTCCAGCCCCTCGCTCCCCTGGTTGCCATTGGCATCTGCGTCATGcttctgatacacacacacgcctctgTGCTTTTCTCCAGCAGAGCTTAACGCCAACTAAACCATGGCCGCGctgaggagaggaggagaggcgGCAAAAACAAGGGGGGGCTGAGAAAGCAagatagagagaaaacaagGAGAGGAGGAGTGCATGTTTTAACCACACACTGCAAAGAACTGTGATTAAACACTCCTCATTCTGCTGCATGGACACTTTAAAAGCAAACCAGCGTGTGTAAAATAGATCCACCTTCGAAACCCTTGTTCAAAAGAACCTTGCCATTAGCAAACACGCgcagcccaaaaaaaaaaatctgtctgaaTTTATTAGATATAGATGTTCAGCTACTAAATACACAGATTAGCAAAGAGAGATTAGTGAGATACAGTTTAGTAGATTATGATGTCTGATAAACACCACCTTGTGGGAAATTATGTTGCAATGAGTGGTTAAAATTCTCAGtgctacatatttatatttgatttttttaaaaataatttctccCTATTCAAGTTCTCAACTTTgtcaattatttaatttcccTTTTTGCCATATTGAagtatttttcacattaatcATTGCTGGAAAAGTATTTGTTATGTATGAAGTATTGAAAATATCACTGATGAGTTCTAGATGATTAAATCCCGTTCATATTACTTGGTATACCCATGACActattgtgaaataaaatcgCACCCCATGGAGGAGAGGAAATATGTTACAAAACCAACACAAGTATTTAATTTGTCCTcaagtaaacatgtttttacagGGTTAGTCATTAAACCTGTATATACTGACCATTTTGTAATGAATGTGTACTATTATCTTGTACTGTGATGCTGAATAGTTTGAGAAAAATCACCATTTATTAGGTTACAGCAGTGGGTGAATAAGTTATATGCACATGCAGATTAGCCTTGACATATAAAAACACTTGAGCAGATGGAAACGCAGAGAAATGTTTGGGATCAGATGCCACTACAATGAACTCCAGATTACTGATAAATGAATATGTCTGTTTGCACCCTCCTTTAATGAGGATGTCACTGTTTCTGTAGGACAATTTTATGATCACACGTTTCTTTGAGA

Function

GO: NA

KEGG:

id description
K18273 TECTA; alpha-tectorin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455060 lncRNA upstream 34270 9124423 ~ 9124758 (+) True G383849
TU454867 lncRNA upstream 194669 8954171 ~ 8964359 (+) True LOC113531287
XR_003403240.2 lncRNA upstream 194936 8954147 ~ 8964092 (+) False LOC113531287
XR_003403243.2 lncRNA upstream 205852 8950792 ~ 8953176 (+) True LOC113531289
TU454787 lncRNA upstream 420954 8737873 ~ 8738074 (+) True G383609
TU455128 lncRNA downstream 7183 9192465 ~ 9192780 (+) True G383911
TU455165 lncRNA downstream 127083 9312365 ~ 9314081 (+) True G383947
TU455171 lncRNA downstream 135389 9320671 ~ 9323752 (+) True G383951
TU455173 lncRNA downstream 135389 9320671 ~ 9322507 (+) False G383951
TU455172 lncRNA downstream 135597 9320879 ~ 9322507 (+) False G383951
XM_026922366.2 mRNA upstream 4702 9131889 ~ 9154326 (+) True tbcelb
XM_026922514.2 mRNA upstream 273901 8868297 ~ 8885127 (+) True LOC113531654
XM_026922308.2 mRNA upstream 292522 8841497 ~ 8866506 (+) True LOC113531529
XM_026922309.2 mRNA upstream 292522 8844214 ~ 8866506 (+) False LOC113531529
XM_026921837.2 mRNA upstream 350145 8794087 ~ 8808883 (+) True zbtb44
XM_026921944.2 mRNA downstream 1378 9186660 ~ 9232642 (+) True usp2b
XM_026921945.2 mRNA downstream 36603 9221885 ~ 9232642 (+) False usp2b
XM_034300896.1 mRNA downstream 70602 9255884 ~ 9283778 (+) False tlcd3a
XM_026922516.2 mRNA downstream 76248 9261530 ~ 9283778 (+) True tlcd3a
XM_026922279.2 mRNA downstream 166258 9351540 ~ 9358888 (+) True c27h9orf78
TU454806 other upstream 383894 8764902 ~ 8775134 (+) True G383625
TU454617 other upstream 567873 8590367 ~ 8591155 (+) False gig2o
TU454332 other upstream 945921 8182391 ~ 8213107 (+) True G383217
TU454294 other upstream 1014148 8142611 ~ 8144880 (+) False spns3
XR_003403275.1 other upstream 1881301 7277599 ~ 7277727 (+) True LOC113531673
XR_003403287.2 other downstream 183207 9368489 ~ 9368564 (+) True LOC113531685
XR_003403288.1 other downstream 183549 9368831 ~ 9368903 (+) True LOC113531686
XR_003403289.1 other downstream 183979 9369261 ~ 9369328 (+) True LOC113531687
XR_003403274.1 other downstream 185778 9371060 ~ 9371137 (+) True LOC113531672
XR_003403285.1 other downstream 186177 9371459 ~ 9371530 (+) True LOC113531683

Expression Profile