RNA id: XM_034300632.1


Basic Information

Item Value
RNA id XM_034300632.1
length 6281
RNA type mRNA
GC content 0.53
exon number 48
gene id cita
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 7295229 ~ 7383384 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTGAAAGTCACCCGGAAGTGACAACGCTTTTAGCAGCAGTGATGTTTTGAATACGCGCGTGAAGTAGGATTATttagacaaatatttttgtcagtttttgaATACAACACTATACTCTTATGCGTATTTGCAATGTTGAAGTTTAAATATGGAGGACATGGCAGCGTTAAGGATCTGGCCTCAGTGGAGCCCATCACAAGCCGCAGCTCAAGACTTAACCAGATCTTCCAGGGGAAGAGCAGTGCGTATGGCTCGGCTGGAGGAAGCGAGTTGAGGAGGGAGACCTTGTTGGATGCTTTGCTTCTGCTCTATCAGGAGTGCAGCTCTCCAGAGCTCATGAAGATCAGACATGTGGCCAGATTTGTCAACAAATtctcagacGTGGTGGCAGAGCTCCAGCAGCTGCAGCCGTCTAAGAAAGATTTCGAGGTGAGAGGAGTGGTGGGCCGTGGCCGCTTCGCTGAGGTGCAGGTGGTGAAAGAGAAGGCCACAGGAGACGTGTACGCCATGAAGGTGATGGACAAGCACTGCCTGCGCACACAGGACAATGTGGCGTTCTACGAGGAGGAGCGGGCCATTCTGGCTCTCAGCAGCAGTCCCTGGATACCACAGCTCCAGTACGCCTTTCAGGACCAGGATAACGTCTACCTGGTGATGGAATACCTGCCTGGAGGAGATCTCATGGCACTGCTGAACAGATACGAGGATCAGTTTGACGAGTCGATGGCTCAGTTTTATCTGGCAGAGCTGGTGCAGGCCATCCACACTGTGCACCAGATGGGATACGTCCATAGAGACGTAAAACCAGAGAATGTTCTTATTGACCGTACAGGACACATTAAGCTGGCAGACTTCGGCTCTGCTTCTAAACTAACCGCAAATAAATCGGTGGGCTCATCCAAGCTTCCAGTTGGCACTCAGGACTTCCTGGCCCCAGAGGTTCTCTCAGCCCTGAACGGGGGTTCTCAGTGCAGTTACGGTCCCGAGTGTGACTGGTGGTCTTTGGGGGTTATCGCGTATGAAATGATCTACATGAAGTCGCCTTTCACTGATGGGACCTCAGCTAAAACTATCAACAACATCATGAACTTCCAGCGTTATCTGAAGTTCCCTGAGGATCCCAAGGCCAGCTCTCAGTTTGTGGACCTTGTGCAGAGTTTGCTGTGTGTGGCACGGGAACGGCTCGGCTACGAGGGCCTGCGCTCTCACCCCTTCTTCTCCAGCGTCGACTGGAGTGGCCTCAGACATGCTGTCCCTCCCTTCGTTCCCTCGCTCCGTGCCGAAGATGACACGTCCAATTTTGAGGAGCCGGAGAGGGCCCCTCGGCGTGCACACGCTGCCCAGCGAGAGCCCCCGCACCCGGGCTTTCAGGGACAAGACCTGCCCTTTCTAGGCTGGTTCTTCAGCCGGGCCCTAACTGCACTGGCCAAATCtgaATCAGTGGCGGCAGGCCTCAACTCCCCTGCCAAGTCCAactcaatggaaaaaaaactgcagctaaAAAGCAAAGAACTTCAAGACACCCAAGACAAATGTCACAAGATGGAGCAGGAGATCTCGCGCTTCCAGCGTAAGATGACCGACCTGGAGTCGGTGCTCCAGCAGAAGGACGTGGAGCTCAAGGCCTCCGAGACACAAAGGAGCATTCTGGAGCAGGACCTCGCCACTTACATCACCGAATGCAGCagtctGAAGCGCAGCTTGGAGCAGGCGCGTGTCGAGGTGTCTCAGGAGGATGACAAGGCTCTACAGCTGCTCCATGATATTCGAGAGCAGAGCAACAAGCTGCAGGAGATTAAAGAACAGGAGTACCACGCTCAGCTGGAGGAGATGCAGGTGACCATCAGGCAGCTGGAGGAGGATCTGTCTGCTGCCCGGCGTCGTAGCGATCTGTACGAAGCTGAGCTGCGAGACTCGCGCCAGACAAGCGAAGAGCTCAAGAGGAAGGCTGCAGACTACCAGCAGAGAAtccagaagGCTAAAGAGCAGGGCAAGGTTGAGGCGGAAGAGCTGCTCACCAAGCTGGAGAAGACCAATGCAGAGCAGCAGTTGAAGATCCAGGAGTTACAGGATAAGCTGTCTAAGGCGGTGAAGGCGAGCACGGAGGCCACAGAGCTTCTGCAGAACATTCGTCAGGCCAAAGAGCGGCTGGAGCGTGAACTGGAGCGGCTGCGTAGCAAAACGGATCCCAGCGACACACTGCGCAGACGTCTGCGCGAGACTGAGgaaggCAGAAAGACTCTGGAGAACCAAGTGAAGAGGCTAGAGATGGTGGAGCGAAGAGAGAATAAACTGAAAGATGACATTCAGACCAAATCGCAGCAGATCCAGCAGATGGCTGAGAAGATCCTGgAACTGGAAGAGAACCTGAGGGAAACTCAAGCCACCGCCCAGAGGATGGAGGCCCACCTAGTCCAGAAGGAAAGGCTGTATGAAGACAAGATCAAGGTGCTGGAGGCTCAGATGAAGGCAGACTTGGCTGATAAGGACATACTGGAGGCCAAGCGAGCTCAGCATGAAGAGGAAGTGCGTGAGAAAGGCAAACTCCTCAGCGAACAGAAAGCTACCATCAATGCCATGGAAAATAAGATGAAGAGTCTGGAACAGCGTATTGCTGAGCTCTCTGAGGCCAACAAACTGGCAGCCAACAGCAGCATCTACACCCAGAAAAACATGAAAGCACAGGAGGAGATGATCTCGGAGCTGCGTCAGCAGAAGTTCTACCTGGAGTCGCAGGCAGGAAAGCTGGAGGCTCAAAACGCCAAGCTGGAGGAGCATCTGGAGAAGATGAGTCAGCAGGAGCAGAGCAAGAAAAGCCGGCTGATAGAGCTGGAGACCAGATTGCGAGAGATGGGTCTGGAGCATGAGGAGCAGAAGCTGGAGCTAAAAAGGCAGGTGACGGAGCTGACGCTGTCACTGCAGGAGCGAGAGTCTCAGATCAGCAGTCTGCAGGCGGCACGTCATGCTCTGGAAAGCCAACTACAACAGGCCAAGACCGAGCTGGAGGAGACCACGGCCGAGGCTGAGGAGGAGATCACTGCTCTTAGAGCTCACAGAGATGAAATTCAGCGCAAGTTTGATGCCCTGAGGGACAGCTGCTCGGTGATCACAGACCTGGAGGAGCAGCTGACCCAGCTGACCCAGGAGAATGCCGAGCTGAACCGGCAGAACTTCTACCTGTCCAAACAGCTGGATGAGGTGACGGACGAGAGCGAGGAAAGACTACAGCTCAGCCAGGATGTGGAGCGTCTACGCCGAGAGGTGGCTGACAGAGAGATGCACctgaacaatcagaaacagAACATTGAGACCTTGAAGACGACGTGCAGCATGCTCGAGGAGCAAGTGGTAGAGCTGGAGACGCTGAATGACGAGCTtctagagaaagagagacagtgggaGAACTGGCGCTCAGCCCTGGAGGATGAGAAGGAGCAAGCAGAGCGACGCACACGCGACCTTCAGCGCCTCCTCGATAACGAGAAACAGAACCGACTACGTGCTGATCAGCGCAGCACTGAATCCCGCCAGGCTGTGGAGCTGGCTGTGCGCGAACACAAGGCCGAAATCCTCGCCCTCCAGCAGGCGCTCAAGGAGCAGAGGCTCAAAGCTGAGAGTCTGTCTGATACATTGAATGACCTGGAGAAGAAGCATGCCATGTTGGAGATGAACGCTCGCAGCCTCCAGCAGAAActagagactgagagagagctCAAGCAGAGGCTGATGGAGGAGCAAGGAAAGCTGCAGCAACAGATGGACCTCCAGAAGACCCATATCTTCAGACTGACTCAGGGTCTGCAGGAAGCACTGGACCAAACTGACCTGCTCAAGACTGAGAGAACAGACCTTGAGTACCAGCTAGAAAAtatacagGCCGTGTACTCTCATGAGAAGGTGAAGATGGAAGGCACGATCTCTCAGCAGACCAAACTCATTGACTTCCTTCAGGCCAAGATGGACCAACCCATCAAGAAAAAGAAGGGTATTTTTGGACGTCGGCGGGAGGAGATGGTTGCCGTCGGTAACGGGGCAGCAGGCATGGCACAGGGGCAGCCGGCAGTGCCTATGCAGTACAGCGACATGAAGGCGGCACTAGAGAAGGAGCGAGCACGGTGCACTGAGCTGGAGGAGGCCCTACAAAAGATGAGGATAGAGCTGCGCTCACTGAGAGAAGAGGCGGCTCACTTCAAGGCCCAGGAGCATGTGGCCCCCTCCACACCGGCCTCAGCCCGTCACCAGCTCCTTATGTCGGCCATCGTTAAGTCTCCTGAACGGCAGCCAAATCCAAGCAGCCTGCTGAACCCAGCCAGCTCGGCCCGACGCAAGGAGACCTCCACTCCCGAGGAGAAGAGGAGGGTTACATTCGAAAAGTATGGGCGGCGTGTGAAGGAGAGGATGCACCATAACATTCCTCACCGCTTTACAGTGGGACTCAACATGAGAGCCGCCAAATGTGCAGTCTGCCTGGACACTGTGCACTTTGGTAGACAGGCTGCAACCTGCCTGGaatgTCATACTCTGTGCCATCCCAAGTGCTCCCCCTGTCTTCCTGCTACGTGTGGTCTGCCTCCGGAGTATGCCACCCACTTCTCTGAGGCTCTGTGCAGGGACAAGGCCAACTCTCCAGCGCTGCAGGTCAAAGAAGCTTCTGGACATGTGCGCCTGGAAGGCTGGATGAAGCAGCCTAGGAATGGGAAGCGAGGTCAGCAGGGCTGGGAGAGCAAGTATGTAGTTCTGGACGGAACTAAAGTCTCCATCTACGAGTCAGAACCCAGAGAAGattcaGTGAAGCCACAGGAGGAGTTTGAACTGTGTTTACCTGATGGTGAGGTGACAGTCCATGGCGCTGTGGGAGCCTCTGAGCTCATCAACACTGCAAAGTCAGataTACCATACGTACTGAAGCTTGAGTCTCATCCACACACAACATGTTGGCCTGGTCAGTCGCTCTACTTCATGGCCCCCAGTTTCCCTGATAAACAGCGCTGGGTGGCTGTTCTGGAGTCAGTGGTTGCTGGCAGCAGGAGCTCACGTGAAAAATCAGAGTCTGATGCAGCAGGTGTAGCTAAACGACAGAAGACTCTCTCTCCACTAGTACAGAAACTTTTGGGGAATTCCTTGTTGAAGCTGGAGGGTGATGACCGGTTGGATATCAACTGTACTTTACCACTGACTGATCAGaTTGTAATGGTGGGTTCAGAAGAGGGTCTGTATGCTCTGAATGTGATAAAGAACTCTCTGACTCACATCCCGGGCCTGACCTCCGTCTTCCAAATCCAGATTCTCAAAGAGCTCGACAAATTGCTCATGATCACAGgaGAGGAGCGAGCTCTGTGTCTGGTGGAGATTAAAAGAGTGAAGcagtctctgtctcagtctcaccTGCCTGCCCAGCCTGAACTCTGTCCTTATATCTTTGAGGCAGTGAAGGGATGTCATCTCTTTGCCTCTGGCAAGatTGAGAATGGGATGTGTATCTGTGCTGCAATGCCAAATAAGATCACTATCCTGCGCTACAACGAAAGCCTCAGCAAGTTCTGCATCAGGAAGgaGATTGAGACCTCCGAGCCCTGCAGCTGCATCCACTTCACAGGTTACAGCATCATCATCGGCACAAACAAGTTCTATGAGATCGAGATGAAGCAGTATGTGCTGGAGGAGTTCCTGGATAAGAATGATGTGACGCTGGCCTCGGCCGTGTTCGCCGCTTCCTCGCACAGCTTCCCCATCTCCATCATTCAGGTGTCCTGCGCCCCACAGAAGGATGAGTACCTGCTCTGCTTCCACGAGTTTGGAGTGTTTGTAGATGCATATGGCCGCCGGAGTCGCAGCGACGATATCAAATGGAGTAGACTGCCTCTGTCCTTCGCCTACAGAGAGCCGTACTTGTTCGTCACTTACTTCAACTCTCTAGATGTGATTGAGGTTCAGAGCCACTCTGCGCTGGGgcCTCACGCCTACGCCCACCTGGACATCCCTAGCCCACGGTACCTGGGTCCTGCCATCTCATCTGGCGCTGTGTACCTAGCCTCTTCTTACCAGAACAAGCTGAGGGTCATCTGCTGCAAGGGCAACCTGGTGCAGGAGAGCTCCGCCTCCGAGCCTCAGAGAAACGGCTCCACCCGCAGGAGGAAGagtgctttttttatttgctccAAGGAGTGAGGAGGCTATTactattttatacatatatacagaaaCACATACACTTTAACTCTGCAAAATGTGTTCGGCTGTGATTAACTGTAATATGAATAAAGAAAGTAtttttaagaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453653 lncRNA upstream 34139 7260253 ~ 7261090 (+) True LOC113531088
XR_004577398.1 lncRNA upstream 138000 7154594 ~ 7157229 (+) True LOC117596228
XR_004577397.1 lncRNA upstream 138000 7154594 ~ 7157229 (+) False LOC117596228
TU453632 lncRNA upstream 185520 7108726 ~ 7109709 (+) True G382606
TU453390 lncRNA upstream 227468 7066813 ~ 7067761 (+) True G382380
TU453677 lncRNA downstream 7319 7386510 ~ 7388236 (+) True G382646
TU453699 lncRNA downstream 69720 7448911 ~ 7450445 (+) True G382667
TU453724 lncRNA downstream 118575 7497766 ~ 7500585 (+) True G382686
TU453732 lncRNA downstream 159223 7538414 ~ 7544086 (+) False dpm2
TU454007 lncRNA downstream 266945 7646136 ~ 7646471 (+) True G382929
XM_026922294.2 mRNA upstream 4092 7279646 ~ 7291137 (+) True LOC113531518
XM_026922341.2 mRNA upstream 15821 7275554 ~ 7279408 (+) True rplp0
XM_034300495.1 mRNA upstream 34362 7260255 ~ 7260867 (+) False LOC113531088
XM_034300571.1 mRNA upstream 56535 7224710 ~ 7238694 (+) True gusb
XM_026921688.2 mRNA upstream 115332 7163301 ~ 7179897 (+) True ca4a
XM_026921495.2 mRNA downstream 32914 7412105 ~ 7434020 (+) False pkn3
XM_026921497.2 mRNA downstream 39081 7418272 ~ 7434020 (+) True pkn3
XM_026921584.2 mRNA downstream 108625 7487816 ~ 7536970 (+) True fam102ab
XM_026921585.2 mRNA downstream 108636 7487827 ~ 7536970 (+) False fam102ab
XM_026921586.2 mRNA downstream 109454 7488645 ~ 7536970 (+) False fam102ab
XR_003403275.1 other upstream 17502 7277599 ~ 7277727 (+) True LOC113531673
XR_003403276.1 other upstream 18256 7276845 ~ 7276973 (+) True LOC113531674
XR_004577432.1 other upstream 237030 6962210 ~ 7058199 (+) False LOC113531592
TU452818 other upstream 911569 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 1052532 6223168 ~ 6242697 (+) True G381893
TU454294 other downstream 763420 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 803200 8182391 ~ 8213107 (+) True G383217
TU454617 other downstream 1211176 8590367 ~ 8591155 (+) False gig2o
TU454806 other downstream 1385711 8764902 ~ 8775134 (+) True G383625
XR_003403287.2 other downstream 1989298 9368489 ~ 9368564 (+) True LOC113531685

Expression Profile