RNA id: XM_026922013.2


Basic Information

Item Value
RNA id XM_026922013.2
length 3567
RNA type mRNA
GC content 0.47
exon number 8
gene id taok3b
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10272650 ~ 10284551 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CCCGATATTCCTCCCCAgaaagcttcttcttcttcttctctctctctctctctctctcatcctcctcctcctcggcGTGCAGTTCCGCGCGACATCCGCCGCCATGCAGCGTTCGCTCGCGGTCAGGAGCGCCGCGCGAAGCCCGTGATCAGCGAACGCTGAACGCCGCGGGTTGGGGAGGGGAGGAAACGGAGCGAGGTAGAGGATGCCGCGCGCGAACTATGCCTTACGCGGGACGCAGGGAGACGCAGCAGCATCATCATCGTCGGCGGCAGCAGCGGCAttatcctcctcctcctcctcctcctcctcaacagcatcctcatcctcagcagcagcagcggcggCGGAGCGCGCGGCTGGTGCCCACCCCCCAACATCATCCGTGGCTCGCGTGTTCGCTCCCCCCCTGCAGCAGAAGGAGGATGCTGGAGTGAGGGATGAGGCTCGAGACGGGCGCGCCGGGCCAGAGCCGCGGCCTGCTTCTTCTCCCCGAAGCTGCGCGCGCCGACGCTAAAGTTAGAGCCCCTGCAAGCATCCGCGCGCCCTTCGCCACCGTCGCACCGGCGTGTTCGGTCAGCAAGGAGATCCAGGAGCATGAGCAGGACTCTGTGTGGCGGGAGCAGATGTCAGGGTACAAACGCATGCGGCGGCAGCACCAGAAGCAGCTGATCGCGCTGGAGAACAAGCTGAAGGCCGAGATGGATGAGCACAAGCTCCGGCTGCAGAAGGAAGTAGAGACCCAGGCCAACAACACTTACATTGAACTGGAGCGGCTAGCCAAGAAGCAGGCTGCCCAGTTGGATAAGGAGATGAAGGCATCAGCCGCGGAGGAGAAGAGAATCCAGCAACAAATCTTGGTCCAACAGAAGAAGGAGCTGACCACCTTCTTGgacacacagaaaaaacagtACAGACTGTGCAGGGACAGGATGAAGGAAGAGATGAATGAGGACCTTAGCACACCAAAGGAGGAGAAGCAGGAGAGGCTGTCACGCCACAAGGAGACAATGCAGCGCTCACAGGCTGAGGAAGAGGCACAGCTGCTCAACCAGCAGAGGCTCATCTATGAAAGAAGCTGCCGTGCTCTGAAGAGACGAAGCCTCATAAAAAAACATGAGTTTGAACAGGAACAGATGCGGGAGGAGCTGAACAAGAAGAAGCTGCAGAAGGAGATGGAGCATGCGTTGATGATCCGGCAAGATGAGTCCACACAGGACCTGGAGCGACGGCAGTTGGAGTGTCTGCACAGGCTTCGCATGGAGCTGATCCGTTTGCAGCATCACACTGAActggagaaccaggaggaatACAACAACCGACGCCAGAGAGAGCTGCACAGGAAACACGCACTAGAGCGCCGGCAGCAGCCCAGGAACCTCAAGGCATTGGAGATGCAGATCAAAAAGCAATTCCAGGACACTTGTAAGGTCCAGAATAAGCAGTACAAAGCTCTGAGGAACCATCAGCTAGAGGTCTCCCCCAAGAGTGACCACAAAGCCCTGCTGAAGACTCTGAAGGAAGAGCAGACACGCAAGCTTGCTGTGCTGGCTGAACAGTATGAGCAGAGCATTAACGATATGATGGCCTCGCAAGCGCTACGTCTGGAAGCTGAGCAGGAGGCCGAGTGCCAGGCCTTGAAGCGGCAGTTGCAGCAGGAGATGGAGCTTCTGGATGCCTACCAAAGCAAGACGAAGGAGCAGGCTGAGGCCCAGCATGAGCGAGACATGCAGAAGTTGGAGCAGAAAGCATCCTTGCGCAGGGCTCACCTGGAACAGAAAATTGAAGAGGAACTGGCTGCACTTCAGAAAGAGCGGACCGAAAAAGTCAAAAATTTATTTGAGCGCCAAGAGCGAGAGCTGGAGACCTTTGATGTGGAGAGCTCCCGATTGGGTTTTGGAAGCTTGGCCTCATTTGACTTTCCCAAGGAAGATGACAGATGATCAAACCTAGGCTGGCAGGGCCATTTGATGCTGATGTCTCTGGATATGTTGTGCCTGTACTGTCACTAACTACTGGATTTACCAAGATCACCTTTACAGTGACCATGCTGGATCTGTCTTTTAAAATCTTAATTACTGGCTGGGGGAACTTCTGAAATTGGAACATAATCTGCAGCCGACACAAGTGACTTAATGGAGCTCAGAAAGCAACAGAGCTAAATCTAGAAGAACAGAACTTTTCTCCATGCCGTCGACCCACTTTTGGTATTAAAATCAGTAATTCAGGATATTTTAGTACAAGTAAGCACTTTGATATGTTTAAGTATGAACCCAACATGTAAAGTGAACATATTGTGTGAAAATGCCTTTGGTGTTATCAAAGGACATTGTGACTGTAGAATGTGTCCTCCGTCTTCACCGTGGCTATTagctgtttttgtctttgtttctcaCAGCAAATGTGAATACTGTTGGCGAAAGCTGTAAGCAAAGGCAGGTTTTGAAACAGtgtcagattttaaaatatagtgACTATATTGAGAGCATTCAGTTACTTTCATATTGTGGTAGAACACACACCTCTtttttaaaagggaaaaaaataggcACTATAATTTAATCATTGTTCAGTATCCTAAATTAATtggcatcattttttttaattactacaACAAATCAATGCAGTCAAGATTCCTTCCTGGTATTATTGCATGCACTTTAAAAGACAAATTCAGGTTGTGAAGTGGAGCATGGATCTGTCAGAGATTTTAGCTGTCTGTAAATAAAAGTGGTCCATAGCAGTTTTGTTTCATGGCTATTGATACTGAACATAAGCTTTATCTTTGATATGAAAGATTGCCAAATTGCCAAATGCCTTTAAGTTATGTTATGAATGTTTTagtttcctttcttttgcccAGGTGACATCATAGTTTGTTGAATTGTGACTCATTCAGTGTGGCGTTATCAATGCTCTTGtacaggcaaaaaaaatggtgcaATTTGTGTtgtaaaaattttatataaatatttgtatatgatAATCTAAATAGGGGTTTACACGTGTATTGGTCAGTCTTTGCCAAAATAAATATGGGAATCTTATTCAGTGGTGACAATGGAAGGCAAACTATTTTTGTAAGCAAAACGGAGAATTACCAGTTTCACTTGTAATGTAACAACAAAATCTATTATGGTTCTTTTTGGCAAGATTCCTGTCTAGTTGGTGttgagaaacaacaaaaaaaaagttaatcagCTTTTTAAGAAGTAAATCTTACTAAGTAATTCTTAAGAAGTTGATTAAGAATTTAAGTAATTCTTACAAAGTAATTCTTAAgaagtggtaatttgcaagcAAATACTTTAGAAAGCATTATGTGGGGCCAGGGCAATTAATATCTTTTTAAGCCCTAAAGATtcatatcttttttaaaaaaaaaaaaacacttgtgtcACACTATGCATACCTGGCACATAACATTGTGGAACTCAAGCTAAGGGATGCCATTCAGTTTCATATTTTGTGACTGTCATTACAGGCCTGTTTTCAAACAAAGCCATTGTTGAAACTGCCATTGCACAAGTGAAGTGatgttttaatgaataaacTGAATGAAGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455799 lncRNA upstream 143119 10129243 ~ 10129531 (+) True G384466
TU455792 lncRNA upstream 144679 10127771 ~ 10127971 (+) True G384461
TU455790 lncRNA upstream 149764 10122533 ~ 10122886 (+) True G384459
TU455519 lncRNA upstream 436738 9835704 ~ 9835912 (+) True G384212
TU455504 lncRNA upstream 458959 9813485 ~ 9813691 (+) True G384197
TU455967 lncRNA downstream 22123 10306674 ~ 10306908 (+) True G384583
TU456005 lncRNA downstream 73108 10357659 ~ 10358263 (+) True G384606
TU456006 lncRNA downstream 73719 10358270 ~ 10358498 (+) True G384607
TU456007 lncRNA downstream 76704 10361255 ~ 10361490 (+) True G384608
TU455977 lncRNA downstream 96019 10380570 ~ 10388271 (+) True G384592
XM_026922015.2 mRNA upstream 10905 10252587 ~ 10261745 (+) True tescb
XM_026921463.2 mRNA upstream 49618 10211942 ~ 10223032 (+) True LOC113531012
XM_026922386.2 mRNA upstream 86489 10184088 ~ 10186161 (+) True hspb15
XM_034300649.1 mRNA upstream 89329 10170124 ~ 10183321 (+) False dab2
XM_026922385.2 mRNA downstream 35513 10320064 ~ 10341504 (+) True cabp7b
XM_034300545.1 mRNA downstream 82706 10367257 ~ 10376469 (+) True arpc5lb
XM_034300544.1 mRNA downstream 82711 10367262 ~ 10378138 (+) False arpc5lb
XM_034300546.1 mRNA downstream 85946 10370497 ~ 10378138 (+) False arpc5lb
XM_026921623.2 mRNA downstream 501006 10785557 ~ 10825976 (+) True ppp1cc
TU455483 other upstream 504614 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 901120 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 901513 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 903322 9369261 ~ 9369328 (+) True LOC113531687
XR_003403288.1 other upstream 903747 9368831 ~ 9368903 (+) True LOC113531686
TU455978 other downstream 93662 10378213 ~ 10379665 (+) True G384593
XR_003403209.2 other downstream 1013429 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 3537237 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 3541299 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 5076807 15361358 ~ 15367247 (+) True fkbp6

Expression Profile