RNA id: XM_034300523.1


Basic Information

Item Value
RNA id XM_034300523.1
length 4949
RNA type mRNA
GC content 0.44
exon number 25
gene id lrsam1
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9687039 ~ 9707115 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

ATTTACCGTCAGCGCCGTCGGTAGAAATATTATGGTTAGTGATGTCAGGAAATGTCATGTGGCTAGTTCAGTTACTTTTCAGTAATATCTACAACACTAAATTGACAGTCTGAAGAGATAATCATCGGAAAGCttgacagaaacacagcttcGTATGGAATAAGCAGCTGAACTCAGAAGGGAGCTGAAGAAAGAGTGGCTTCAGGATGCCTCTGTTCTACAGGAAGAAGAAACCAAGTGAGGAGTCCAAGAAGCGCCTGGAGTATCAGTTGTGCCTGTCTAAAGAAGCCGGAGCAGATGACATCCTGGACATTTCAAACTGTGAGCTTTCAGAGGTTCCATCCAGTGTCTTCTCCATGTGCAAGGTGCTCCAGAAAAAgGTGCTCATCCTCTGTGGAAATGAGCTCAAGTCGCTGGTGCCCAAAAGCTGTGTCATAAGCACTCTTGCAACTATAAAGGTGTTGGACCTGCATGAAAACAAGCTCACTTCGCTCCCAGACGATATTGGACAGCTGTCCTCCCTGCAGGTGTTGAATGCAGAAAATAACCAGATCAAGGCTCTTCCAGCGTCTATAGGGGATCTTCGGAATCTACAGACGCTTAACATGAAAGGGAACTGCCTCCGTGAGCTGCCCTCGTCTGTGGGACGCTTGTGCAGTCTGCGCACACTGGACCTGAGTGAGAACAGCATCAGAGAGCTGCCCAAAGAATTGGCCAACGTTCGAACCCTGGAGagCTTGACTCTTGATGCATGCGTTATGAGCTACCCGCCTGCCTCAGTCTGCACAGCAGGCACAGAAGAAATCCAGCGCTTTCTCTGCTCAGAGTTGGGGCTGGAGTACTGTCCTCCTTCACAGTACCTGCTGCCCGTGTTGGAAAACGATAGCAGCAAGCCGAGCCTGGACTGTGTGGATGGGGAGGATATCGCCTGGCAGAGCAAATTTATGGACTACGAGAAGAGAAAGGAGCAGAAGCAGCTTGAGAAGCTGAACTTTGAAAAGAAGCtggaagagaaacagagagagcaagCACAGCTCCTTATTCTCAACAACACTCGCAAAGAGGACATGCTGCTGTCTGTCAAACTGGAGCAGGAGCGTGTAGAGCAGGGTGTCAGTCAGCAGCAAAAGTTCCAGGAGGCTGAGAGGCAGAAGCTGCTGGAGAAAGTTCGGCAGGCTGAAGCCAGCATCTCCACCCGTATCTCTAATCTGCTGCTGGACAACAAACGCCAAGAAAAAAGTGCTGAATTTCTGCAGGCTTTAGAGGAAGATCGAATCCGTATGGAGCATCTTACAGCCATCACGCAGGAAGAAGCCAGCTCTCTAAGAAAGAGAGACGTTGCAGtTGCTATGCAGACCATGTTATCAGAGAGCTATGCAGTGAGGTTACTGCAGGAGGCCAGTGAGACCAGGAGACAGAATATGATGTCTGAAGCCTGCAAGAGTATGAAGACCTTGGACAGGAAGTTTGAGCAGGTTTTGGCCCTGCAGCAGCTTGATAAAAGCAAAGCCATCAGCCAGATCCTTCAGGAGGAGGAGATGCAGAAGGCAGCATTTGAGGCCTTGCAGCTCCAAAGGGACAGTGTACATGGCTACATTCGCAACCAGATAAGGCTAATTGAGGCAGAGTTAATGCAGCTGACAAAGCTGGAGGTTAAAAGGAGGAATCTGGATGCAGAAACCTTGCAGGAGGCATTGGCAGAGCAGAGGACAGCTCTGTCAGATATGCTCCAGCAGCTGCTGAAACAGAAGGACCAGAGGGAGATGGAACTCAAACAGATCTTGATGGAGATGGAGCTGAAGAGTGACTCTACTCAGCAAAACTACTGGATGATCCAGTATCAAAGACTGCTGGATGCCAAGCCACTGTCTCTGCGCATGCAGGAAGCTGGTGTGGATAATGACCTGGTGAACTTGCTGTGTAAGCTCTCTGCTCAGCATTACCTGCCAATCATAGCTCATCACCGAATCACTGCAGAGGCTCTGCGTCACATGACCACCAAAGACCTCGGCAAGTTGGGGATCAGTGAAGTGGGAGTACAGAAATCTCTCCTCCACTGGGCCAGAGAACAACCGAATTCTCCTAAGAAGTTCCAGGAGGAACAAGAACCTGGACCGTCCACGCCCAGCGCTCCCCTGCAACAGCAGCTGACCCCGCCTCTGACCCCCAGCACTCCCCTGACCCCTACAGCCCCCAGCCCACTGGACACACCCAGCACGAACGAGTGTGTGGTGTGCATGGAGGATAGGTCCCTGGTGGTCTTCTTGCCATGTGGTCATATATGCTGCTGCCAGGTCTGCAGTGACGCTCTGCAGTCATGCCCGCTGTGCCGCAGCAACATCTCTCAGCGCATCCGCCTTTACCACGGCTGAACCCGTCCAGGACCTGGTCTGACCACTCATGCACTTTCACACGCTTACAAAATACCTGCAACTCAGTTACTCTCTTTCGTCATGCATGATGTCCTAGGCTATGATTCCCAACAGTAAACCAGGAGCCAATAAATCAGGAGTATTTCAAATGGGAAAAGAGGCTTGCTACGAGATAGGTCATTTAACTTTATGCGTTTCACTTAGTGAGAAAGATTCAAAGATTTTACTCTCCTGAATTTCAGCAGATAATCTACAGCTCTGGTTGTCATGTTATATATTTGCACTATTTTAATACTTGTGCCTTTTTGTGTCTGATGTGTGCTTTCCCAAATCCTGACTGTTATTACATACAATTCATCCTCATGATCTTAAACTACATCAATTACTAAACTTCTTCCCTATTAATCATGCTTGTGACTTATGAGTTAAAGCCCGTGTCACCTTATTTCCTTAATTAGCTTCTTACTGTTAGCTATAGTTTCTCTGGTGAATGGAtcagtgaatataaaataagaagTTTTTTCTCCAGTTAAGAGATatcagaatttcttttttttttttctttccagtttTCTTCTGGGCAGTTTGATTTGGGTGGGACTAGATTTGATCATGGGAATGTCAGACCTACCAAAAGGCATGCCAATCAGAAATAGCCATCTGCTTACTCCAGCGCCACTGTTACCCCAACCACAGTTACTAAAGTAACTTCTTTCCTGCTGGATCGCCTCATTGTACCTGAGCGTGAGCAAAACTGCAACTAGCAGCATCTTtgtcattttatacacactATTTTAGTGTAGAAGTTTTGTGTGTGGCACTGGTGAGTAATTCTACCTCTCCTTTTTAACGGTTAAAGGAATGAGAATTAGCAGAGTGGCTTCGCTACGATTTGAGATACTCATGATCTATACCTAGTGCTGTAAAAAGGTAGGCAagcagtgtttttgtttaatccTCAGTACTTACATGGGAGCACATTGAAAAGATTACAATTTCAGAAAatgctttgtgtttgtatgaGACAATCTCACAAAGTTTCAAATGGAAATGTGAAAAGTTAATCTGATCTTGCTGAGCTTCACAGCCAAAACTTATGACCCTAAACAGTTAATAAGCTGTTCGCCATCTGATAATAGGCAGTTAAATAAGAGGACAGTAAAGCTCATTTTAATCTCCTTTATTAAGCCAGTTGTGATATTGTGATGTGGGCTGCTTTTTCACGTTGCAGTGCGatgctctgttcatcagtgtaGCTAGGTGGAAAGAGGAATGTATTTACACAAACTACAGTCTTGTAGTTGTAGTCTTGCACCATGCTGGTagaaatatacacaaacatgtcACAGCTCTAATCAGGCTTTTTGTTCCTTGTAGTTATAACTAAATTGTAGTTTGGCATTTATACGCTCaacagccactttattagaaacacctgtataTTCATGCAATCAGCCGATGAgcgcataaaatcatgctgatacaggtcaagagcttcaggtaatgttcacatcaaacatcagactgggggaaaaatgtgatctgccactgctgggcccttgagcaaggcccttaaccctcaactgctcagttgtataaaatgagataattgtaagtcgttgtaaagagtggctaatTGAGTTACtttagacttcctgtcagctcaaaccagggGTATAactgttcctattaaagtggctggtaaGTGTATATTTCTTGATTCTACCATTGGAGCTTTTTAACATTTGAAATAGTGTTGCCAGGGGCTTTAACACCAAaggggtttttttccccagtctgTGGGAAGATTCTATCCCCTTCGCTTCCATTAGCTTTTTCTGAAAGGGGAAATACCTATAAATGTGTACTTAGATTGTATAGCCCATAAACAAGTTGAAGCTGTATTTAAATCACTTCCTCAACCTTATTAAACACTGCCTCCCTCCAACGCTATGGTTAGGCACATCAAATAtctacattttcaacattttgcAGTGTTAATGTCTCAGTTATTGTGGCATATTCTGACCAACAGCAGTTAGGTAGGTCATGTTTAGCAGTCATGTTAGGTCTGTAGGtcatgtttgttgttgttttagttGGCCAGCCACCATCTAGGCACCTCCAGGGTGTTTTTCGTTGCTGAGGTGATTTGTATTTCTGTAAGAAACTGTTAATTGATCAATATTCTGCACTGGTGGTGTTTGCCAAAAATCTTTGGAAAACACAATATTCTTGCCACTGCCTTCAGTTTGCTGTTGATGAAAGTTTGGTAAAGGGGTGAActtatttaatatatagataCTCCAAGTTTTTACCCTCATATTCACTGAAGTGCTCTTATAATCAAGCATGCTTTCATCTAGAAATCTGTCATTTAGCATGtcataacatatatatatatatatatataaacaaaagtgTGCAAAAGTCTAGGTCCTGCAATATTTAGGGCTATTTAAATGGGCAGTGTTTGTAAAATACTTTAAAGTGTTAGAATAAATGTAACTTAACACTGATACAATAAAAGTAACAAGAAATTTTGGTGTGCTTGTGGTGGAACttttaccaaaaaaa

Function

GO:

id name namespace
GO:0048666 neuron development biological_process
GO:0008270 zinc ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455437 lncRNA upstream 1186 9682313 ~ 9686604 (+) True G384144
TU455438 lncRNA upstream 1186 9682313 ~ 9686604 (+) False G384144
TU455439 lncRNA upstream 1186 9682313 ~ 9686604 (+) False G384144
TU455422 lncRNA upstream 126416 9561135 ~ 9561374 (+) True G384134
TU455412 lncRNA upstream 161272 9526311 ~ 9526518 (+) True G384125
TU455489 lncRNA downstream 84029 9791144 ~ 9791911 (+) True G384182
TU455490 lncRNA downstream 86968 9794083 ~ 9794859 (+) True G384183
TU455496 lncRNA downstream 97467 9804582 ~ 9805004 (+) True G384189
TU455504 lncRNA downstream 106370 9813485 ~ 9813691 (+) True G384197
TU455519 lncRNA downstream 128589 9835704 ~ 9835912 (+) True G384212
XM_026921577.2 mRNA upstream 6354 9677303 ~ 9681436 (+) True pole3
XM_026922139.2 mRNA upstream 113120 9571957 ~ 9574670 (+) True zgc:55461
XM_034300877.1 mRNA upstream 129895 9540561 ~ 9557895 (+) True glipr2
XM_034300878.1 mRNA upstream 129895 9556046 ~ 9557895 (+) False glipr2
XM_034300457.1 mRNA upstream 186801 9487842 ~ 9500989 (+) True LOC113531033
XM_026921891.2 mRNA downstream 36294 9743409 ~ 9761838 (+) False ptpa
XM_026921893.2 mRNA downstream 36294 9743409 ~ 9761838 (+) False ptpa
XM_026921894.2 mRNA downstream 36341 9743456 ~ 9761838 (+) False ptpa
XM_034300599.1 mRNA downstream 36643 9743758 ~ 9761838 (+) True ptpa
XM_026921569.2 mRNA downstream 273185 9980300 ~ 9987624 (+) True ntmt1
XR_003403285.1 other upstream 316260 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 316653 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 318462 9369261 ~ 9369328 (+) True LOC113531687
XR_003403288.1 other upstream 318887 9368831 ~ 9368903 (+) True LOC113531686
XR_003403287.2 other upstream 319226 9368489 ~ 9368564 (+) True LOC113531685
TU455483 other downstream 58625 9765740 ~ 9768036 (+) True G384178
TU455978 other downstream 671098 10378213 ~ 10379665 (+) True G384593
XR_003403209.2 other downstream 1590865 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 4114673 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 4118735 13825850 ~ 13828148 (+) True G386325

Expression Profile