RNA id: XM_026922115.2


Basic Information

Item Value
RNA id XM_026922115.2
length 4370
RNA type mRNA
GC content 0.41
exon number 12
gene id mapkap1
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11219058 ~ 11276976 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AAACCGGAAGTAAGAGGATCTCATTTGATTGTTCAACGTCAGAGGCTTTATcacaaaagaattttgattgtGACATTTCAGAAGCGCTGATTAACTTGCATTTTACTCGCGTGATTGTCCGTATGGTGTTGGGCAACGACAATATATTCAGCCATCGAGGCAACCACAAATGCTCCACTGCTGAGTGGACACAACAAATGATAACTGGTGAAGAACCATCAGACCTTTTTTGAGTGCCAGAACCTGATGaaagtgaatgaaagaaagtgGAGGGTTGGATGGTTTAAGAAAGCTGTAGCAGAAGGCGCCACTGAGGATGGCTTTCCTTGACAATCCCACCATCATACTGGCCCACATCAGACAGTCCCATGTGACTAGTGATGACTCAGGAATGTGTGAGATGGTGCTGATTGACCATGATGTTGACTTAGAGAAGTGTTATTTAGGTGCCATGTCTTGTGGTAGTGGATTGATAGGTTTGTTAGGGGATGGCATTGTTAGTGGAGATGTGCAGCCCTGTGACCTTTCTCAGTCTGTGGACATCACTTCCAGTTGGGACTTTGGTATCCGTCGTCGCTCCAACACAGCTCAAAGGCTGGAAAGGCTAAGAAAGGAAAGACAGAACCAGATCAAGTGTAAAAACATTCCATGGAAGGAGAGGACATCATCCCAGTCAGCGGAAGACTTGAGCTTCCTTTTTGAAAAGAAGGACTTTAAGGACAGGCCTCGAAGCACAGGGACCAAATCCACCCTCTCTCTGCGCCTAGAGCAGTGTCCTCAACAGCTCAACAACCCCTTTAATGAGTACTCCAAATTTGATGGCAAGggcCATGTAGGTACAACAGCAACCAAAAAAATAGATGTCTACCTCTCAATGCAGTCTACCCAAGAGAAGTTGCATCCTATGATGGTAGTGACAATGGCCAATGCTCGAGTCCATGATCTTATTGGCCTTATTTGCTGGCAATACACCAGTGAGGGCCGTGAACCAAAACTAAATGAGAATGTCAACACATACTGCCTCCACATAGCTGAGGATGATGGGGAGGTGGATACAGATTTCCCCCCTCTAGATTCCAATGAGCCCATCCACAAGTTTGGTTTCAGCACACTTGCCCTGGTGGAGAAGTACTCATCTCCAGGTCTAGGCCCCAAGCAGTCACTTTTTGTCAGAATAAATGCAGCTCATGGTTTCTCGTTGATTCCAGTGGACAGTTTGAAGGTAACCATGAAAGAGATTCTACAGAAGGCcctcaagaaaagaaaaggctcACAAAAGGGTTCAGGCCCCATGTATCGTTTGGAAAAGCAGATGGAGCCAAATGTGGCAGTGGAGCTGGACAGTACACTGGAGAGTCAGAGCACACTGGAGTTCTGTCTAGTCCGAGAGAACAGCTccagaggagaggagagctCAGAAGAGGACCCGCCCATAGACATCAATACAGTACAAGATATGTTGAGCAGTCACCACTACAAATCCTTTAAGATAAGCATGATCCACAAGCTCCGCTTCACTACTGATGTTCAGCTAGGTATATCAGGTGAGAAGGTGGAGATTGATCCTGTCGCCAATCAGAAAACAAGCACTAAGTTCTGGATACGACAGAAGCCCATCTCCATTGACTCAGACCTGCTTTGCGCATGTGACCTGGTAGAGGAGAAGAGTCCGAGTCATGCAATATTTAAGCTCACATATCTTAGCAACCATGACTACAAGGTCCTTTACTTTGAATGTGATGCTGCTACAGTCAACGAGATCGTGCTAAAGGTGAACTACATCCTTGAGTCTCGAGCCAGCACCTCAAGAGCTGACTATTTTGCACAGAAGCAACGCAAACTCAGCCGACGTACCAGCTTTAGCTTTCAGAAAGACAAGAAATCAAGCCAGTAGGACATAGTCAGACCTCTGATGAGTGTCTCTCAAccaagcagagagaaaaaaaattgaaggaaAAAATCATTGTTAAACAGAAGCCTTTAAATAGAAATAGGGTGAAATACAGTAGCTACAACAAGAGAGAAGTGAAAACAATAATCATAACAATGACAGAAGATGAAATAATATTGAGGGGAGGAAAGGAGGAAACAAGAATGCAAATTAATATAAGCTGAGGAAATTAAGGTTCTGAGGTTAAGATTAAGAGCGGGAGACTCTTAATAGTAGTGTAGTTGAATCAACTCCTCAGGGTCTATCTCTATATTGGACTTAGCCATTATCTGCACTGATACTCTCTACTGTCAttcaaaaatgtgaaaagaaaaaataaaacacaattttagCTGATACCATCCAGTCTTTGCCATTATAGCATAAGGCCAGGGAAGCTGCGTGTTGTGCCAGGgttagtgtttttctttttgtattatGTCCACTGCATACAAGTATAACAAATGAATGCAAGTGGACTCCTGATGgagtaaagatttaaaaaacataattgcAAATAACATATATTTTCCCAAAGTATAAATAGTAACCATATTCAGgatcagtaaaaaaaagaaacccttCTTACtcataatgttaaattaaagaCATAGCACTCTGgggacttaaaaaaaaaaaaataggcattTTTGCTTGTgacttttaacaataaaactGAACCAgacttattttaaataatgcatgtGGCTGTTAGGTTCCAGAAATTACAAACGTGATCAGATAAAttattacatgtattttttattttttatttttttgctgtgatctgtgttctatttcacccctcctaGCCACCAAGAGTGATGAGAGTCACCTTGTTGAGTGTATGCACAGATGCCGAGAGCTTCTTACAAAGTCACATATTGACGTGTGTCACTATAATATATACTGCTTTCATACAGCTTttgttcctcttttttcttctcgCCTCATACACATCGGACCATGTGTACACAATATGGAGATAGGAGAGATATGAGAGTGCAGGTTTCACACACGCAACACTCGTGTTGGTGCCCAGATAACTCTGGGGTGACCTTTTGTTTGATTACTTCTTTTCCACTCAGTTTTGTGAATCAGTCAATTGACAAATGCAGCATTTCTTGAAACTGGGGATGCAGGGCATGTTTCTTGCTGTGCTGGGTGCATGCCCTGCAGTACTATTTATATCAGGTGATGGGCATCCGATCCTCAGACCACCTGTTCATCTGACATGTCTAAGCAGAGGCTGGCTCACCATGGCCTATAGACGGACTGCACACCCAGCCCATGCCACGGTGAACACTGTGACATGCATCTCCTCCTCATATCCTCTCCTCTGTCCTTTTCCTCATAAAATTGTAAGCATCCAGGTAATTCTCACCGCCCCTGGCAGTTAGAAGGGGTAAAATACacagtgtcccaaaagtctccctacacaggggaaattaacacttttagcaaaatgtaactttatttataaaacattctctacatgattgccatttctttgtaaacacacatcgAGTCATCTCTCCCATCTTTGGCTcccagtgtagtgtgtgaggtGCTTGCCATGTTTGCTGTTAAAGTCAattgcaaccttgcgacagcttcccgatctggccatgagaatgatttcaatacattcttcttttgtcaaaggcattcttaaaggctatctgtaaatatatatatatatgcacacacacacacacacaaagtatgaaaatttttggaagacattttgctaaaaagtgttagtgTTCTCCTATGTATGACTTAGGACACCCTATAGAATGCTTCTGAATAGAATGGTTTTGTGAATCCAAGATAACCAATTACTGCACCAGATGTCACTACCAGACTTTGTTAGAAAATTTTGTCATGTGTCAAGAATGTACGTGATTACCACTGCCCTTAGCGGTTAATGGGGGTTGActgttgttttgatttttttttttttgaaaattgagGATGTATAACATGCTCTTTTTGtacaacattatacattatatattttaggtTTGTTAAATGTACATGTTACTTTCTTTGCTTAgcccttttctttatttcaaatATGGGAACAAACTTGCAAAATGTAACTTAACCccaaaagctgtgtttttttcaatttgtttaACTGgatcctttttttgtttgttttgttttgttttgttttttgttcaaaTACAAAACTCATGTTTCACCTCAGGTTTCTGACTGCCATTTTGTGTTGACTGCTCAAGGCTATTCCCCCTTCATTTGTGATCTGTGAAGTTGCAGCTAATAAATGCCCTTCCTGTCCTGGGAGAAAGTGCTGCATAATTgcatttcaaatgaaaaaatttTAATAGGTCTTATGGCATTAACAATATTTGCTAGATTATGCAGATACTGTATTTAGGTAGATTTTCCCAATAAAGTCTGGTATAAATAC

Function

GO:

id name namespace
GO:0016310 phosphorylation biological_process
GO:0016301 kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456405 lncRNA upstream 74905 11144743 ~ 11145027 (+) True G384977
XR_003403219.2 lncRNA upstream 88065 11130876 ~ 11131867 (+) True LOC113531091
XR_004577443.1 lncRNA upstream 92047 11126383 ~ 11127885 (+) True LOC117596264
TU456400 lncRNA upstream 103350 11116378 ~ 11116582 (+) True G384973
TU456323 lncRNA upstream 121997 11096842 ~ 11097935 (+) True G384906
TU456419 lncRNA downstream 8350 11285326 ~ 11285765 (+) True G384989
TU456412 lncRNA downstream 20998 11297974 ~ 11311011 (+) False ajm1
XR_004577453.1 lncRNA downstream 53757 11330733 ~ 11344595 (+) True LOC117596271
TU456445 lncRNA downstream 70626 11347602 ~ 11347816 (+) True G385014
TU456456 lncRNA downstream 108532 11385508 ~ 11389515 (+) True G385025
XM_034300946.1 mRNA upstream 123791 11025868 ~ 11096141 (+) False fer
XM_026921450.2 mRNA downstream 21004 11297980 ~ 11326055 (+) True ajm1
XM_026921453.2 mRNA downstream 21004 11297980 ~ 11326055 (+) False ajm1
XM_034300913.1 mRNA downstream 21004 11297980 ~ 11326055 (+) False ajm1
XM_026921451.2 mRNA downstream 21004 11297980 ~ 11326055 (+) False ajm1
XM_034300914.1 mRNA downstream 21004 11297980 ~ 11326055 (+) False ajm1
TU455978 other upstream 840267 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 1451896 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 1848402 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 1848795 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 1850604 9369261 ~ 9369328 (+) True LOC113531687
XR_003403209.2 other downstream 21004 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 2544812 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 2548874 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 4084382 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 4757847 16034823 ~ 16038605 (+) True LOC113531248

Expression Profile