RNA id: XM_034300799.1


Basic Information

Item Value
RNA id XM_034300799.1
length 1650
RNA type mRNA
GC content 0.42
exon number 5
gene id surf6
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9380586 ~ 9387508 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCATGCGCGGTATAAACACGTGTCTGTGAGAAAGTTACTGTAGAGACACgctgttttatttaatgtcttatACCCTGTAGTGTTTATGATTTGTTTCACGATTTAAATGTTTGATCTAAAAGGATGAGAAATGTAACCACAGATTTTTCACTCATCCAATAAGATATCGATGTAGAAtttcatCTCCAAAGATGTCCAGCCTCGCTGCTAAATATGACTACCTGCAGAAATTCACCCGAAAAAGCTGCCATTCTGAGGATCAGAAGCCCAAGAAGAGAGGCTATGttccattTCGAGGCAAAGGTGTCGGTGAAGGTGGTCCACTTAAGAAGAAGCAAAAGAACAACCAGGACCCTAGAAAAGGACGTAATATGAACACAAATTACAGGAAGCCAACTCCAAAGAGTATTCATACAGCTGTACAGAATGCTTCTCAGGTCAAAGTTCATCATGGGCAGCAAGTAAAGATGCGGCAGAAGACTGAAGGTACAAAGTCAGAGGAGTATAATGCAGTGGATATTTTAAGGAAAAGACTTCATGAGAAGATTGAGGCGTCTCGGGGACAGggCACTCCAAAAGATCCCTCCTCAGAGGAAGTGCAGAAACGGCGAGCAAAACGAAAACAGGAGAGGGAGCgcaagaagaggaaaagaaaagaattccGGATGAAGAAGTTAGCGGACAGTATTTCAGCAGAGGTCAAAGTAGAAAACGAAACAGAACCAGCACCCGTGCCTCAGAGTGATTCTACAGCAAGCAAACCTGCCAAAAAGGACACAAACTCCATCGTCTTCAACAAGGTAGAAGTAGGGGAGGAGTACGTGGACAAAGGGACCAAGTTAacggagaagaagaaaaggaaggcaAAAGGAACTCTCACTCCCCTCACAGGCAGGAACTACAAACAGCTTTTGTCCCGAGTGGAGGCTAGGAAGGCTCGTCTTGAGGAGCTGAGAGAGAAGGACGAAAAGAAAGCcaagaaggaagaagagaaaatgCGGTGGACTAACGTCCTCTACAAGGCCGAGGGCATGAAGATCAAAGACAACGAGGACCTTCTGCGTGCTTCCTtgaagaggaaggagaaaaTGAAGACACGGAGGAAGAAGAAATGGGCTGAAAGGAGTCAGCACGTGCTGGAGAAGATGCAGCAGAGGCAAGATAAAAGACGCAGAAACATACAGAAATTCAAGCAGAACAAGATGGAGAAGCGTAAACAGAGAGTCAGGAAGAAAGGCAGGGTGCTGCCTGAGGATCTAAAGAAGGCTGCTGtgtagagagaggaaatgagatGAACTTTAGGTAGGTTTAGGTGAAATGTAAGAAAAAGACAAAGTCCAAACTTGGTTTCCAATTCTGTGAAGTTTTAATTCAGTGTAAATATATTAGATACATTAAGCCAGatacttttatttgtaatattggTGTTGATACCTCACTGAATAACTTGATCATTGTCTGTTAAGTagggaaaatacaaaaatatgcaaatatatgcatttttttttttaaacaatgatcGGACTGATTGTATGAATATGTCTTACTGCCTATCTTGATGCTGTCATGGAATTTTCTGTCGAGAAAGAGTTGGTGTTTCAGCCTTCTTTGTATCTTTGTAGTTCAATAAATACAGTTTTGGTGGTTA

Function

GO:

id name namespace
GO:0007507 heart development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455193 lncRNA upstream 37941 9342428 ~ 9342645 (+) True G383965
TU455189 lncRNA upstream 41440 9338933 ~ 9339146 (+) True G383961
TU455186 lncRNA upstream 42680 9337026 ~ 9337906 (+) True G383960
TU455188 lncRNA upstream 43136 9336910 ~ 9337450 (+) False G383960
XR_004577435.1 lncRNA downstream 66537 9454045 ~ 9456252 (+) True LOC117596253
TU455393 lncRNA downstream 98954 9486462 ~ 9486667 (+) True G384106
TU455412 lncRNA downstream 138803 9526311 ~ 9526518 (+) True G384125
TU455422 lncRNA downstream 173627 9561135 ~ 9561374 (+) True G384134
TU455437 lncRNA downstream 294805 9682313 ~ 9686604 (+) True G384144
XM_026922214.2 mRNA upstream 8514 9368344 ~ 9372072 (+) True rpl7a
XM_026922279.2 mRNA upstream 21698 9351540 ~ 9358888 (+) True c27h9orf78
XM_034300896.1 mRNA upstream 96808 9255884 ~ 9283778 (+) False tlcd3a
XM_026922516.2 mRNA upstream 96808 9261530 ~ 9283778 (+) True tlcd3a
XM_026921945.2 mRNA upstream 147944 9221885 ~ 9232642 (+) False usp2b
XM_026922478.2 mRNA downstream 1934 9389442 ~ 9397886 (+) True LOC113531633
XM_026922477.2 mRNA downstream 1934 9389442 ~ 9397886 (+) False LOC113531633
XM_026922375.2 mRNA downstream 14547 9402055 ~ 9413856 (+) True LOC113531568
XM_034300528.1 mRNA downstream 29950 9417458 ~ 9429225 (+) True LOC113531574
XM_026921902.2 mRNA downstream 45020 9432528 ~ 9451287 (+) True prkaa1
XR_003403285.1 other upstream 9056 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 9449 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 11258 9369261 ~ 9369328 (+) True LOC113531687
XR_003403288.1 other upstream 11683 9368831 ~ 9368903 (+) True LOC113531686
XR_003403287.2 other upstream 12022 9368489 ~ 9368564 (+) True LOC113531685
TU455483 other downstream 378232 9765740 ~ 9768036 (+) True G384178
TU455978 other downstream 990705 10378213 ~ 10379665 (+) True G384593
XR_003403209.2 other downstream 1910472 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 4434280 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 4438342 13825850 ~ 13828148 (+) True G386325

Expression Profile