RNA id: XM_026922287.2


Basic Information

Item Value
RNA id XM_026922287.2
length 2614
RNA type mRNA
GC content 0.45
exon number 17
gene id LOC113531512
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6415403 ~ 6432002 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TCCTCTTATGCTGCTTTAATAAGTTTAGCAAGTGGAAGACTGAGCTTCAGTTCCACTTAAACGATGCTGTTAGATAGTGAAAGGTGCTAAAACAGTTGGCGATCAAATTAAATTAGGATACTTTTGTGAATGATTGAGCTGTGACACTGAAAAGGAACGACAAGGAACAAGTTGAAAAGTATGGAATTTTCTTTGGAGATAGATGACAGGACAGAtaaggagagggaggaggaagcAAAGAGAAGAAGTCGTCAAGCAACTGGAAAGGCTAAAACACCAATGGACACTGAGCTCCAAGAGGACCTTGGTTATGCCTGTCCCCAAATCCGAATCGACCCGAACTTTGCTAGGAAAATACAAGAGGCAGAAGGCATACCAGAGCAGCAGGCGACGTCTGACTCTCAGAGCAAAATACAGGGGATAAAACCCGAACCAGATCAGCACAAGAAGTTTGACTTTGAGAGGCTTTTTGATGCCGTGTCCAGCGGTGATATCACTAGGCTGGAGGGCCTGGAGGAGTATctgaatgacaaaaaaaagaagctgacAAGCGCTGATTATGTGCAGAATGGGAAGACAGTCCTGATGAAGGCTCTGCTAAACCTGAAAAATGGAGATAACGAAACAGTGGAGTACTTGCTGGGTATCGCAGAGAGAATGGGACATCTGGATAAGTTAGTGAACGCAGCATATACAGATGCCTACTATGAAGGACAGACAGCTCTTCATATAGCCATTGAGAGGAGAAACAAGCGCTTTGCTGAGCTGCTCATTCAGAAAGGGGCTAATGTCCATGCAAAGGCTAATGGGAAATTCTTCCAGCCACTTAATGAAACATGTTTCTACTTTGGGGAGCTTCCACTTTCTCTGGCAGCATGTACTAATCAGAAAGTTATAGTGGACCTGCTGATGGTTAAAGCAGACGTGAGGTGTAAGGACACTCTGGGCAACACGGTTCTCCATGCTCTTGTGATGGTGGCTGATAACAGCCCTGAAAATACAGACTTTGTTGTTTCCATGTATGACTACATTCTTACTAAAGACGCTGCTAAGAATCAAAAACAGGAGAAGCTGGAAGACATTAAGAACAATCAGGGACTTACTTCCATCAAGCTGGCTGCGAAGCTAGGAAAGATTGGGCTGCTTGAACACATTCTGCATCGCGAGTTCCAGCAGGAAGAGTGTAGGCATCTGTCCCGAATGTTCAGAGAGTGGGCATATGGCCCGGTGCGCGGTTCACTGTACGACCTGGACTCTATCGACACCTACGAGCCAAACTCTGTCCTGGAGATAGTTGTTTATGGCCCAGAGATACCTAATCGTCTCGAGATGCTCCAGATTGAGCCACTTAATAAACTGCTGGAAGACAAATGGAACAGATTTGCCAAATGGATATTCCTCTTCaagtttatcatttatttcatatatctCATCATCTTCACAGCTGTTTCTTATCACCGTGAAGAAGGAACACCCCCATTTCCAATGAGGAAAAATACTGCCGGCTACCTGCTGCTTGCTGGTCATGTCATCATGGCTGTTGGATCACTCTACTTCTTAGTTATTGTGCTGATGGATATATGTAAAAAGCGGCCAAGTCTGCAAACACTGCTGGTAGATGGCTATTCTGACCTGCTTTTTTTATTACAGGCTGGGTTGTTTATAATCTGTGCTTGGCTGTATTTCATCGGGATGCAGGAGTATCTTGCCTTTCTGGTGGTCAGTGTGGCTCTGTGCTGGGTTAATCTCCTCTACTTCTCCAGAGGAACTCAACACATGGGCATCTACAACATCATGATTCAGAGGATATTCCTTGGTGACATCTTGCGCTTCCTTTTTGTCTACATTGTCTTCCTCATTGGATTTTCAGCAGCTATGGTGACTCTACTCCATGAACCCAAGAAAGGAAGCTCTTTGTACACAGACAATGAAAATGTGACAGAAGGCTGCACAAAACCCACCTTTAAAACCATCTCATTCACCACTCTGGAGCTATTTAAGTTCACTATAGGCATGGGCGACCTGGAGTTCACAGAGGAGTAtgagtataaaaatgtattttatgtgcTCCTCATATCCTACATTGTGCTCACCTGCATTCTCCTGCTGAACATGTTGATTGCTCTGATGAGCAAAACTGTAGACAGCATGTCTGAGGAGAGCACCAGCATCTGGAAACTACAGCGTGCCATCATCATCTTGGATCTGGAGAGATATGCATGCTGTCTGAAGACGAAGTTGCGTTCAGGAGTGAGGAGGAACCTGGGCAAAAAAGAGGAGGACTGGCGCTGGTGTTTcagAGTGGAAGAAGTCAACTGGAAAAATTGGAACCACAACCTGGGCATCATCAGTGAGGATCCTGGAGAATGCAACACAGTAATGCGAACTGAACGTTTTCAAGAGCTCAGCCAGTGTGATGTCAGTCGACAGAGATGTAAACGGCAAACAGTCCAGGCAGAAGACGAGACACAACCCCTGGCCTCCAGCCCAGTGTAATGGaactgagaaaaaataaatatatttgaccACTGACTGTACCGAGTTGTAATTTGTCTTATGTCTTATCCAGTTggcttttaaattgtttaaaaaataaaggagGCTTTGAAAGACA

Function

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0006811 ion transport biological_process
GO:0016020 membrane cellular_component

KEGG:

id description
K05222 TRPV1; transient receptor potential cation channel subfamily V member 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU452766 lncRNA upstream 135357 6275707 ~ 6280046 (+) True G381875
TU452790 lncRNA upstream 164330 6226565 ~ 6251073 (+) True G381895
TU452759 lncRNA upstream 180837 6209445 ~ 6234566 (+) True G381868
TU452725 lncRNA upstream 231930 6136273 ~ 6183473 (+) True G381836
TU452715 lncRNA upstream 280378 6124195 ~ 6135025 (+) True G381832
TU453091 lncRNA downstream 20361 6452363 ~ 6452575 (+) True G382122
TU453109 lncRNA downstream 70013 6502015 ~ 6513170 (+) True G382138
TU453117 lncRNA downstream 105029 6537031 ~ 6537231 (+) True G382146
TU453119 lncRNA downstream 117800 6549802 ~ 6550804 (+) True G382148
TU453180 lncRNA downstream 143977 6575979 ~ 6576182 (+) True G382205
XM_026922288.2 mRNA upstream 1223 6408024 ~ 6414180 (+) True shpk
XM_026922493.2 mRNA upstream 9782 6388977 ~ 6405621 (+) True p2rx5
XM_026922479.2 mRNA upstream 31718 6380662 ~ 6383685 (+) True ubb
XM_026922401.2 mRNA upstream 44987 6343314 ~ 6370416 (+) True pigl
XM_026922138.2 mRNA upstream 301954 6063809 ~ 6113449 (+) True LOC113531397
XM_034300947.1 mRNA downstream 4798 6436800 ~ 6451433 (+) True LOC113531597
XM_026921474.2 mRNA downstream 90162 6522164 ~ 6532894 (+) True eral1
XM_034300454.1 mRNA downstream 105776 6537778 ~ 6545735 (+) True tbx16l
XM_026921928.2 mRNA downstream 201968 6633970 ~ 6653902 (+) True LOC113531298
XM_026921929.2 mRNA downstream 226051 6658053 ~ 6662250 (+) True c1qbp
TU452818 other upstream 31743 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 172706 6223168 ~ 6242697 (+) True G381893
TU452724 other upstream 234490 6177804 ~ 6180913 (+) True G381835
XR_004577455.1 other upstream 363506 5990022 ~ 6051897 (+) False zmp:0000001168
XR_004577432.1 other downstream 530208 6962210 ~ 7058199 (+) False LOC113531592
XR_003403276.1 other downstream 844843 7276845 ~ 7276973 (+) True LOC113531674
XR_003403275.1 other downstream 845597 7277599 ~ 7277727 (+) True LOC113531673
TU454294 other downstream 1710609 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 1750389 8182391 ~ 8213107 (+) True G383217

Expression Profile