RNA id: XM_026922288.2


Basic Information

Item Value
RNA id XM_026922288.2
length 2304
RNA type mRNA
GC content 0.44
exon number 7
gene id shpk
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6408024 ~ 6414180 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

AACTGTACAGAGGTTCAAGTCGAATCTCTCCTTTACTTCCTACATTAGTGCTTTACATGAAGTTACAGCTGCTACACGCTATTAAGTGCactatatatttcattattaaacatCATATAAAACACCATGGCTGCACTGCCTGGCTCATCAGCTAAGTATGTTTTGGGCATTGATTTGGGAACCACCTCGATCAAAGTTGTGTTGTTTGACACCAGATCAAAGACTGTGACAGACAGCTGCAGTTTACAGACCAACTCTGACGTCATCGACGACACGCATGAACACATCAAGGAGCAGGACCCTGTGCGGATCATTGCTACTCTTGACCAGTGCATGTGTGCCCTCCCTAAGGAAAAGCTGCATGACGTCATATGCATTGGGGTGTCAGGACAGATGCATGGTGTTTTGTTCTGGAAATCTAACACAGGTTGTGAATGGTACAGTAGTCATGGAGGTCACAAATTCAGACCTCGGGATGCCAGTCGTCTGATCACATGGCAGGATGCACGCTGCACTAGAGATTTCCTGTCAACGCTACCCAAACCTGAGTCACACCTGAATGTGGCTACTGGCTTTGGCTGCGCCTCCATCTTCTGGTACACCAAGCACAGCCCTGAATTTCTTTCAAAGTTCAGTGTCTCAGGAACCATCCAGGACTATGTGGTGTCCATGCTGTGTGGTTTGGAGGTTTGCCTCATGAGTGCGCAGAATGCTGCTAGCTGGGGTTACttcaacaccaccaacaaccaGTGGAATACAGAGATTCTGAATGCTGCAGGATTCCCGGTGCACTTGTTGCCCGTGCTGGTGGATTCTGGGTCTATAGCTGGTGAGACCTGCTCTGATTGGCACGGGATTCCTGCTAACACACCTGTAGGAGCAGCTCTGGGAGACTTCCAGTGCAGCGTTTACTCCTGTATGACGGATAAGACAGACGCAGTATTAAACATGAGCACTTCGGCACAGTTGACATTCTCCATGCCTGCTGATTTCACCCCTGCGAGTGTTCCAGACGCCCTCTCTCCCATCGCTTACTTCCCTTATTTCCACAACACGTACCTAGCCGTGGCCGCCGCACTCAATGGAGGCAACGTTCTGGCAACGTTTGTAGGAATGTTGACTTCTTGGATGAAGGAATTTGGAGTGGAGGTCACTGACTCTGAAGTGTACTCCAAGCTGATCGAGTGTGCCCTTACCCAACCCAGCACTGACCTCCGTGTGACCCCGACCCTGCTAGGAGAACGGCACGACCCCAGCAGCCACGCTGTCGTGTCCCACATCTCCCCAACCAACCTCTCACTGGCTCACGTGACTCGTGCCATTTGTGCAGGGATCGTTGCAAACCTAGCCGCCATGATGCCCCATCACGTGCTGTTGGCTGCAGGAGTGAAACGGATTATGGGTAGCGGGAGCGCTCTGTCTCGGAACGAAGCCTTGAGACAGGAAGTAGAGCGAGCATTCCCTTTCCCTGTGGTCTATGGGAAAGACGTGGACTCAGCAGTCGGAGTGGCAATGGTTTTTAATGACATGCTGTTAGGACACGACTGACTTTAGAGTTAGCCACACTACTTAGCGTGCACTATAGACACTCTGCGCCTTTAAAGATATTATTATGTGCAATTTACAGCCTTGTTGGCTGCTGATGcatttcttaaattaaaaaaagataattctATGTGACcttaaaatacatacaaaatacagtTAGTACATTCCTTATATTATGGATCCACAATAAAATCCCTGATGCTCATGTCAGTCCATTTGGGTTGCATTAATACATCGAGTATTAATTTAATGGAGGGGATTTTACAGATTTGTACATCTACTAGATGTTATTGAAGTTTTGGAACTGTAATTATTACAGTGCTAagttattattgatttattattaatttttgttaatttattacaattttttttaggtCAGATCCCTAATGGCATTGTTTGTGCTTGTAGAGCAGATCATATTgctatttctttgtttcttttcttcttttttctgtaacacATATAGAGGACATATTTTGTAATTGTACTGTAACAttaataatttgtaaattaagtTTTCAagctgaaagaaaacaaaatgtcttgTATATGTCTTGCAAATGTCTTGTACTTGTGTTTCATGAAAAAAAGGGCCAAATCAATCCTAAATGAGCCTGAGATGGACCTGGTAgtcacacattctctctctctctctctctctctctctctctctctcgctctctcataTTACTGTAATCGTTTAAGGTTGTTTAATACAGCTgaacaatgaaataaatgtgatcATTACCTAAA

Function

GO: NA

KEGG:

id description
K11214 SHPK; sedoheptulokinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU452766 lncRNA upstream 127978 6275707 ~ 6280046 (+) True G381875
TU452790 lncRNA upstream 156951 6226565 ~ 6251073 (+) True G381895
TU452759 lncRNA upstream 173458 6209445 ~ 6234566 (+) True G381868
TU452725 lncRNA upstream 224551 6136273 ~ 6183473 (+) True G381836
TU452715 lncRNA upstream 272999 6124195 ~ 6135025 (+) True G381832
TU453091 lncRNA downstream 38183 6452363 ~ 6452575 (+) True G382122
TU453109 lncRNA downstream 87835 6502015 ~ 6513170 (+) True G382138
TU453117 lncRNA downstream 122851 6537031 ~ 6537231 (+) True G382146
TU453119 lncRNA downstream 135622 6549802 ~ 6550804 (+) True G382148
TU453180 lncRNA downstream 161799 6575979 ~ 6576182 (+) True G382205
XM_026922493.2 mRNA upstream 2403 6388977 ~ 6405621 (+) True p2rx5
XM_026922479.2 mRNA upstream 24339 6380662 ~ 6383685 (+) True ubb
XM_026922401.2 mRNA upstream 37608 6343314 ~ 6370416 (+) True pigl
XM_026922138.2 mRNA upstream 294575 6063809 ~ 6113449 (+) True LOC113531397
XM_026922120.2 mRNA upstream 355668 6019071 ~ 6052356 (+) False zmp:0000001168
XM_026922287.2 mRNA downstream 1223 6415403 ~ 6432002 (+) True LOC113531512
XM_034300947.1 mRNA downstream 22620 6436800 ~ 6451433 (+) True LOC113531597
XM_026921474.2 mRNA downstream 107984 6522164 ~ 6532894 (+) True eral1
XM_034300454.1 mRNA downstream 123598 6537778 ~ 6545735 (+) True tbx16l
XM_026921928.2 mRNA downstream 219790 6633970 ~ 6653902 (+) True LOC113531298
TU452818 other upstream 24364 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 165327 6223168 ~ 6242697 (+) True G381893
TU452724 other upstream 227111 6177804 ~ 6180913 (+) True G381835
XR_004577455.1 other upstream 356127 5990022 ~ 6051897 (+) False zmp:0000001168
XR_004577432.1 other downstream 548030 6962210 ~ 7058199 (+) False LOC113531592
XR_003403276.1 other downstream 862665 7276845 ~ 7276973 (+) True LOC113531674
XR_003403275.1 other downstream 863419 7277599 ~ 7277727 (+) True LOC113531673
TU454294 other downstream 1728431 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 1768211 8182391 ~ 8213107 (+) True G383217

Expression Profile