RNA id: XM_026922308.2


Basic Information

Item Value
RNA id XM_026922308.2
length 2262
RNA type mRNA
GC content 0.45
exon number 13
gene id LOC113531529
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 8841497 ~ 8866506 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cagtaatctgaggctatagtgggcacaggctcaacaAAACTCAACAGCTGAAGAGTGGaaaaacatcgcctggtctttCCAATCTAAATCCGGATATGCTCCAGATCcactatgaccctgaccaggataaagtggctactgaaaatgaCCCAACGCATCAACTTCCACTTTTTCCGTGCTGCCATCAGCAGCACATCATCTTTCACCATGTCTCATGGAAAGCCTCATCCAGCAGTTTTGAACAACAAGCAAAAAAATACCTTCAGGGAGCGTCATGGTCTTCAAGACATTGCCCCACTGTTGCGGAGTATGGAGGAGACTCCAGAACCTATCCCTACCACCGTCAAAGGCACAATCCCTACATGGATCCGCGGAAATCTTCTTCGCAATGGCCCTGGAAAGTTTGATTTTGGAAATCAACACTTTAATCACTGGTTTGATGGAATGGCCTTGATGCACCGCTTTCAGATTgctgatggtcaggtgacctACAGGAGTCGCTTCCTGCGCAGTGACTCCTACAAGCAGAACAGTGAGATGAATCGAATCGTGGTGTCTGAGTTTGGCACTCTTGCTCTCCCCGACCCATGCAAGAATATCTTTCAGCGCTTCCTATCCCGCTTTGATAGGTTGAAGCCCACAGACAACGCTAACGTGAGCTTTGTCAAATACAAAGGTGACTTCTATGTCAGCACAGAGACAAACTTTATGTACAAAATTGATACGGACACTCTAGAAACAAAAGATAAGGTGGACTGGAGCAAGTTCATTGCTGTTAATGGTGCAACTGCCCACCCCCATATTGACCAAGATGGTACAGTCTACAACATGGGCAACTCCTATAATAGCAAAGGTGCTTTCTACAACATTATCAGAGTGCCCTCAAAGAAAGAAGACCTTGATGATACACTGCAGGGGGCAAAGGTGCTGTGTTCCATTTCTCCTGCTGATAAAAGCAAGCCTTCCTATTACCACAGCTTTGcCATGTCTGAGAACTATGTGGTGTTCATCGAACAGCCCATAAAGTTGGACCTGGCTAAGATAGTGACATCTAGAATGAGGGGGAAAGGCATAAGTGACTGTATCTACTGGGACCCAAAACAAGAGACTGTCTTCCATGTTGTAAACAAACATACTGGAAAGGTGAATCCAGTGAAGTACCACACCAAGGCTCTATCCACCTTCCACCAGATCAATGCATTTGAGGAGGATGGCTTCCTCATAGTGGATATGTGCTGCTCAGATGATGGCCAGGCCCTCAATATCTACTTTCTTCAGAATTTGCGCAAGTCTGGAGAAGCACTGGATGAGGTATACAACAGCATAGACAATTATTTTCCTCGCCGCTTTGTTCTGCCTCTGCGCATTACCAATGATACTCCACTGAACCAGAACCTCAACACACGGCCCAACAGCACTGCTTCTGCGGTCTGCCTCAATAAAGACAAAGTGTTCTGCATGTCTGAGGATCTCCATGACAATGAACTTCTCAATTACGGTGGTTTGGAGTTCCCACACATTCACTATGACCGATGCAACACCAAACCATACCGCTACTTCTATGGCTGTGGCTTTGGTCACCTGGTGGCAGACTCACTGCTCAAAATAGACCTGGAGAGTAAAAAGCTCAAGGCATGGTGTCAGCCAGGCCTCTATCCATCTGAACCTGTGTTTGTCCCCTCACCTAATGCAAAGGAAGAGGATGATGGGGTCATCCTATCTGTTGTCCTCACACCCATTGAGGATAAGGGTACTTTCCTGCTGGTTCTGGATGCTAAGACATTTGAGGAAATGGGAAGAGCTAAAGTGCCTGTTAACATTCCCTCTGGCTTCCACGGAACCTTTCTAGTGACATAAGAGTTCTCAACTCTTGCCATGTTTATGACTTCACCAACAAATTTTTGCCCCTTGCAAACAGAAATCAGCTGCTGCCACTTTACACTAGGTGTTCCCCGGGTATCAGTACTTGGCCCGCCCCTTTTCATTATTCATCTGCTTCCAATGTCTTAGTTTTCACCACTGTGCTGATAATCcttgcacatatacacatatgcaACTTTCCTCTTCTCACAACACTTATAGTTAgggttttatgtgttttattgtttcactttgtaattatttgttttaatgctgTACAAATTCTGTCACTGTTATGCGACTTGGCTTAGGTGCCATACAAATTAAACTTGTCAATTAGTATTACCAACACAGTGAAACATGCAAGCATAGAGACAATAAAGGCACAGTTAAAGATATCAA

Function

GO: NA

KEGG:

id description
K10252 BCDO2; beta,beta-carotene 9',10'-dioxygenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU454787 lncRNA upstream 103423 8737873 ~ 8738074 (+) True G383609
XR_004577387.1 lncRNA upstream 226142 8614303 ~ 8615355 (+) True LOC117596219
TU454599 lncRNA upstream 276240 8563592 ~ 8565257 (+) False atf5a
TU454598 lncRNA upstream 284654 8554596 ~ 8556843 (+) True G383448
TU454593 lncRNA upstream 333115 8507216 ~ 8508382 (+) True G383443
XR_003403243.2 lncRNA downstream 84286 8950792 ~ 8953176 (+) True LOC113531289
XR_003403240.2 lncRNA downstream 87641 8954147 ~ 8964092 (+) False LOC113531287
TU454867 lncRNA downstream 87665 8954171 ~ 8964359 (+) True LOC113531287
TU455060 lncRNA downstream 257917 9124423 ~ 9124758 (+) True G383849
TU455128 lncRNA downstream 325959 9192465 ~ 9192780 (+) True G383911
XM_026921837.2 mRNA upstream 32614 8794087 ~ 8808883 (+) True zbtb44
XM_026921838.2 mRNA upstream 32614 8794089 ~ 8808883 (+) False zbtb44
XM_026921839.2 mRNA upstream 34256 8794084 ~ 8807241 (+) False zbtb44
XM_026921836.2 mRNA upstream 47662 8778274 ~ 8793835 (+) True adamts8a
XM_026922082.2 mRNA upstream 249116 8590310 ~ 8592381 (+) True gig2o
XM_026922514.2 mRNA downstream 1791 8868297 ~ 8885127 (+) True LOC113531654
XM_026922366.2 mRNA downstream 265383 9131889 ~ 9154326 (+) True tbcelb
XM_026921943.2 mRNA downstream 292522 9159028 ~ 9185282 (+) True tecta
XM_026921944.2 mRNA downstream 320154 9186660 ~ 9232642 (+) True usp2b
XM_026921945.2 mRNA downstream 355379 9221885 ~ 9232642 (+) False usp2b
TU454806 other upstream 66363 8764902 ~ 8775134 (+) True G383625
TU454617 other upstream 250342 8590367 ~ 8591155 (+) False gig2o
TU454332 other upstream 628390 8182391 ~ 8213107 (+) True G383217
TU454294 other upstream 696617 8142611 ~ 8144880 (+) False spns3
XR_003403275.1 other upstream 1563770 7277599 ~ 7277727 (+) True LOC113531673
XR_003403287.2 other downstream 501983 9368489 ~ 9368564 (+) True LOC113531685
XR_003403288.1 other downstream 502325 9368831 ~ 9368903 (+) True LOC113531686
XR_003403289.1 other downstream 502755 9369261 ~ 9369328 (+) True LOC113531687
XR_003403274.1 other downstream 504554 9371060 ~ 9371137 (+) True LOC113531672
XR_003403285.1 other downstream 504953 9371459 ~ 9371530 (+) True LOC113531683

Expression Profile