RNA id: XM_026922366.2


Basic Information

Item Value
RNA id XM_026922366.2
length 3709
RNA type mRNA
GC content 0.44
exon number 9
gene id tbcelb
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9131889 ~ 9154326 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CGTCACTTCCGGGTTAAGCCTCCCATCTGATTCGCTACTGTCCTCTgatcagcaacaaaaacaagcagGGCGACCTGGAGAGCGCTGGGTGTCGGGAAGAAGAATGGCTGTTCTGTGACCGTTAGTGTCCATGTGACCATTACTCCAGCAACTGGAGGCTGAAACATAACGTTGCAGTTGTGGAGGTGTTTGGCGTCCAGAGCTGGACAGCACTAGGACCTTCAACTGTGAGGTGAAGAGACGAAAGGAAAGATGGAGATGGACATGGAGGATGAAATGGGACGCACTCTAGTTCAGGTCATCAGTGAGAAGTACAACCCAGACAACTTCCCGTACTGCCGTGGGCCTGGTGCCGGTGTGGTGATCCGCACCAGTCCTCAGGGTTCTCCTGTCAAAGATCGTCTAAATCTGCCCAGTGTGCTGGTTCTGGATAGCTGTGGAATAAGTCAGGCTGGAGATGAGGAGGAAGTGGCGACATTCTGCGCTCATGTGGTGGAGTTGGATCTGTCTCACAACCAGTTCAGAGATTGGGGAGAGATCAGTAAGATTCTGTCTAACATCCCTCATTTGGACTTTCTCAATCTGAGCATGAATCCTCTGAAGGGCTCCAGCCTGGAGCCTGGGGCCGCCGAAGCCTTCTCAGGCCTCCGCCGCCTCGTCCTCAACAACACACACGTCTCCTGGGACATGGTGCATATGCTCACGCAAGAGATCCCTGAACTGGAGGAGCTCTTCCTGTGCCTGAATGACTacgagtgtgtgaatttgtcaCGGGTGCCCTGCCCATCGCTGCACCTGCTGCACATCACCGATAATCTGCTGCAGGACTGGAGCGAGGTGCGTAAACTGGGCCTCCTGTACCCACGTCTGACATCGCTCATCCTCGCTAATaactctctctcctccatccaCGAGCCTGAGGACTCACTGCAGTGCCTGTTCCCTAACCTGCACAGTATCAACCTGCACAACTCAGgtCTGAATCACTGGGAGGACATTGAGAAGCTCAATTTCTTTCCAAAGCTTCGGGAGGTTCGTCTAATGGGCATCCCCTTACTGCAGCCTTACACTGACCAAGAGAGACGATACCTTACAATAGCACATTTGCCTTCTGTGACTGTTCTGAATGGAAGTGTGGTGACAGACGGAGAAAGAGAGGATGCTGAACGCTTCTACATCCGCTATCACCTGGACTGTCCTGAGGATGAGTTACCACAGagGTTTCACAATCTTGTGGCCCGTTATGGGCGCTTGGCACCACTGGCAGACGTGGATTTGCGTCCACTGAGCTGTGCCCAGGTTGAGCTGCACTTTGGGGACAACATCGAGCAGCTGGAGCTCCGGCTGGACCAGACTGTGGCCGACCTCAAGAAGCAGCTCAGGCCTGTGGTCCAGCTCCCGGTCAACAAAATGCGCGTCTACTACATTGACAGGCAGCTGGGTTACGCATTAGCACCTCAAGAGCTCAAGTATGGAGCCCGAGCCCTCCATTCCTACAGCATACGGGATGGAGATGAGATCCTGGTAGTGCCAAAGAGTCAGTGAATAAAGCGATATGATCACAGAGACAGTGGTTAAAAAAGGGACCAGTTGGTATGGAAGATGGAAATAAAGATCTCCCAGTAAAGCCAGTGTAAACAATGAGTTCCAAATCAATTTATAAATCAGTGAATCACTCTGTCTTGTGGGAAGTCAGAGAGAGAAGGGCTGCGTGCCCTAAAAGCTGACCATTTACTTTGTTGAACCTGAGAGATCTAATGCTGTCCAGCAGAAATAATCATTTCCAAAAAGACTATTGGGATTGGGATATAACATCTTCTGTTGTTGCTACATTATTACTTTTGAAGAGAAAGGTCattggtgtatttttttgtcaaaGATAACCAAGGTTTCAAAGGTTCGAACTCATCCCATTGAGAGTTTCTTGCGTTACACATACAATATGCATATGTGCATGAGACTGCTTCTCAGGAACAACTAATCCCATGCATTTCCAAGTATTTTTACCACTTACGGTCTACAATACACATTATTGTTAAGACACAATCCTATATTACAAGTATTACAGtctcacacataaacacatatctCAGTgtataaagaatttaaaaatctCTAATTTTAATCATACTCAATTTTAAATTCAGATCAAGCTAATAAAAGCTTGCATAGTGATATTGACTTAGTGAGTCTGATCTGGCCTCATGCTATGAGCTACAGTATTCCCTTAACATTCATTCTGGTAGGGCTCCCTGCTACAAGGGTGGTTAGAGAAAGAAATGTTGCCTTAGCTTTTCCTAGGGGCTAGCACCGTATGATGAATGGATCAGGACTGGCCTAGTCAACGGCAGGTTTGTGTTTGATTGATGCAGAACACACTGATCCCTGGCTGTGGTAACACCATCTCAGTCACACAGCCAGGACGGCTTTCTCCCTGCTTAGATTACAATAGGGTCACCCACCACACTGAAACCTCTCTGGGTTCATGTGTCTCTTCACATGCAGTTCACATCCTCATGCCTAGCTTCCCTTATTAAGACCACTTAATGTTTCCAATGGGGTGGAACTCAGCTTCACATCACATGAGAATCTAGTCATTTGATATACATTTGCCTGAGCAACCTTCCTTTTATTCCATTTATGCAGAAATGCCTTTGAGGCTTTCTGGCAATTGTTGGTCCTCTTGGTCAGTTTCCTGTCTCATATTGGTGCACAAGTAAGACTTGATATGTCCAGTTAGTGTTTGTCAAAGTTGGCTCACACTAAAAAATGGGCCAGCATGAATAAAACTGCTGTAATTTGGCATGCAATCCTTCAGCAGTTGTATTTATTGTGCTTTTCAGGTAGATTATTTATTAAGGTTTTTAACATAATTACAATATCCACAGTATATTTAGGCTGCGGGCTCAGTAATGTAAGTCACatattgagaaaaaaagagtttatCAAAAAAGCGCTTCTTATTGGTTTGGTATAATTTTATGTGTAACAGATTTTAAAgaactgaatataaaaaaaaagaaaaagaaaaaacctttttaactttttcatattcgttttattaatatatagttTTGGTTGTGATACATAAAGAAAATTCAGGCTTTATATTATCTTGCATGTGTTCAAGAAGGCTAGACACATGCATTTGAGCCAAGTCATGTGATGATACTTATTTTTGTTATGTACTTGCTTTTGTCATATAATGTACAACTGcatgaacatttatgaacatgTATGAGTGGACAGTACATCATTACTGACAACTGAGTCATCTGCAAAGTCGGTTTTAAAATGGTCAATTCATGCCAGTCTTTACATTTTAGGTTTTGAATTACCATGCCTCGACCCTCAATTCCCAGCAAAGTGGCTCTAATCCTGAACTGGCTGAACTAGTGATGCTATATGGACAGACTATGTATGCTATCCCTTAGTGCATAAATTTAGTGTGGACATTGTTACATGCTTTGGTCTTAGTGTAGCATCTTTTGTCTCACGGATAAATCATTATTGCTATATCACATCCCATGTGTTGCAATTGTTTTTCTGATGTAAGCAGATCATTAGTGTTGCATCTTAATCCATGTTTGAGTCATATCCTACCACTGCTGTTTGAGTTCCATCTGAAATAATGTTCCCCTAATCCTttgattatgcaaatcaccCTTGTCTTGCAGTTTGGCAGCTCATTAGATCAGTTCTAATTCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455060 lncRNA upstream 7131 9124423 ~ 9124758 (+) True G383849
TU454867 lncRNA upstream 167530 8954171 ~ 8964359 (+) True LOC113531287
XR_003403240.2 lncRNA upstream 167797 8954147 ~ 8964092 (+) False LOC113531287
XR_003403243.2 lncRNA upstream 178713 8950792 ~ 8953176 (+) True LOC113531289
TU454787 lncRNA upstream 393815 8737873 ~ 8738074 (+) True G383609
TU455128 lncRNA downstream 38139 9192465 ~ 9192780 (+) True G383911
TU455165 lncRNA downstream 158039 9312365 ~ 9314081 (+) True G383947
TU455171 lncRNA downstream 166345 9320671 ~ 9323752 (+) True G383951
TU455173 lncRNA downstream 166345 9320671 ~ 9322507 (+) False G383951
TU455172 lncRNA downstream 166553 9320879 ~ 9322507 (+) False G383951
XM_026922514.2 mRNA upstream 246762 8868297 ~ 8885127 (+) True LOC113531654
XM_026922308.2 mRNA upstream 265383 8841497 ~ 8866506 (+) True LOC113531529
XM_026922309.2 mRNA upstream 265383 8844214 ~ 8866506 (+) False LOC113531529
XM_026921837.2 mRNA upstream 323006 8794087 ~ 8808883 (+) True zbtb44
XM_026921838.2 mRNA upstream 323006 8794089 ~ 8808883 (+) False zbtb44
XM_026921943.2 mRNA downstream 4702 9159028 ~ 9185282 (+) True tecta
XM_026921944.2 mRNA downstream 32334 9186660 ~ 9232642 (+) True usp2b
XM_026921945.2 mRNA downstream 67559 9221885 ~ 9232642 (+) False usp2b
XM_034300896.1 mRNA downstream 101558 9255884 ~ 9283778 (+) False tlcd3a
XM_026922516.2 mRNA downstream 107204 9261530 ~ 9283778 (+) True tlcd3a
TU454806 other upstream 356755 8764902 ~ 8775134 (+) True G383625
TU454617 other upstream 540734 8590367 ~ 8591155 (+) False gig2o
TU454332 other upstream 918782 8182391 ~ 8213107 (+) True G383217
TU454294 other upstream 987009 8142611 ~ 8144880 (+) False spns3
XR_003403275.1 other upstream 1854162 7277599 ~ 7277727 (+) True LOC113531673
XR_003403287.2 other downstream 214163 9368489 ~ 9368564 (+) True LOC113531685
XR_003403288.1 other downstream 214505 9368831 ~ 9368903 (+) True LOC113531686
XR_003403289.1 other downstream 214935 9369261 ~ 9369328 (+) True LOC113531687
XR_003403274.1 other downstream 216734 9371060 ~ 9371137 (+) True LOC113531672
XR_003403285.1 other downstream 217133 9371459 ~ 9371530 (+) True LOC113531683

Expression Profile