RNA id: XM_034300946.1


Basic Information

Item Value
RNA id XM_034300946.1
length 3964
RNA type mRNA
GC content 0.42
exon number 19
gene id fer
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 11025868 ~ 11096141 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGGCAGAACAGGGGCAGAACGGGGGCTCGGGGTAGTGCTGTAAACGTCATGATCCTAATCCAGAGCGGAAACTCCTCCCGAATCCCAACTCCGGCAACGGAACGAAAGAAAGAGGAATACCGAGGAATCAGGAAACACGGAGAAACAATGCAATAAACGACTTAATACAAGAAATGCAGACTTGAAGGCAGCTTCCTGGTGAGTGAGAGATAACCGTGTTCCTGGTGAGATGGGGTTCGGTCAGGACTTGAGAAACTCCCACGAGGGCCTAATCAAACTGCAGGACTGGGAGCTGAAGCTACTAGAAACAGTGAAGCGCTTCATGACGCTTCGTGTTAAGAGTGACAAGGAGTATGCATCACTCCTCCTCAACATTAGCCAACAGGTGGACAAGCAAGACAACTCCTCGCAGATCCACTACATCAGCACTGTCTCCAAGTCATGGGCTCAGATGGTACAGCAGACAGAACAGCTTAGTAAGATCATGAAGTCTCATGCTGAGGAGCTGAATTCTGGCCCACTGCACCGCCTCACCATGATGATCAAAGACAAGCAGCAGGTGAAGAGAAGCTACCAGAGTATACACCAGCAGATTGAGTTTGAGCTGAACAAGGTTACAAAAAGTGACATTGAAAAGCTGAAGGGTACATACAGACAATTAACTAAAGATGCCCATACTGCCAAAGAGAAATACAAGGAGGCAATTATAAAAGGTAAGGAGCCAGAGAAGGCCCGTGAGCGATACGACAAAGCCACCATGAAGCTGCACAATCTGCACAACCAGTATGTGCTGGCAGTGCGTAGTGCACAGCTGCACCACGAGCACTATCATGAAAACGCACTCCCTCTCCTGCTTGATTCTCTGCAGAAGATGCAAGAGGAGATGGTCAGCGCCTTGAAGGGGATACTTGAGGAGTACAGTGAAATCACCAGTCTCTTAACAGATGAAATAGTGAAGGTCCACAAAGAAATACACACCTCTATTGATCAAATTGATCCTGCATCTGAGTATGACAACTTCATTGAAGCGTACAGGTCACCTGAAACCAACGAACCTAATGTAGAATTTGATGTCTCACTATTAGAGGAAACAGAGAATCTTCAAGCCAATGAGATTCTATGGAATAATTTGACAGCGGACAGTTTACAAGCAATGCTAAAGTCTACAACTGAGGAGCTTGTCTTGACCCAAAAGAGTCTACACAGTAAAGAGGACCTTATGGTAGACCTGCAGAGCAAAATTGAAGAGTACACCAAAAGTTGCGAGAAGAAGTCTGATAAGGTGCTGTTGCTGAGTCAGAAGCAGTCTCTGGAGGAACTAAAACAGATGGTGCAGCTCCTGCGCTGTTCAGAAGCCAAACTGAGCTCCCAGAAGGAGATGCTGGAGCACAAGATGCAGGAGAATGAGGGCAAGGAACCTCCAACTGTGGTCAATTATGAGGAGGATGCACGATCTGTCAACTCAATGGACAAAAGTAAAGACAGAATATCAAAGTTTGACACCCTCCGCCACTCTATTGCTGGCATCATCCGTTCGCCAAAGTCTGTATTGGGCTCATCCTCATTCATTGATGTGATCCCTATCAGTGAAAAACCATTGGGGGATCAGGAGTGGTACCATGGGGCGATTCCACGCACAGAGGCCCAGGAGCTGCTTAAGCAGCAGGGAGACTTCCTGGTTCGCGAGAGCCATGGCAAGCCTGGCGAGTATGTACTCTCTGTATTCTCAGATGCCCAGCGCAGACACTTCATCATTCAGTTTGCAGACAATCAGTATCGATTTGAAGGCACTGGATTTCCCACCATTCCTCAGTTGATTGAGTACCATTACTCTACAAAACAAGTCATTACTAAAAAGTCTGGAGTCACACTTTTAAATCCTGTCTTGAAGGATAAAAAATGGATTCTTAATCATGAGGATGTCATTCTTGGAGAACTTCTAGGAAAGGGCAATTTTGGTGAGGTGTTCAAAGGAATGTTGAGGGACAAGACACCTGTGGCTGTGAAAACTTGTAAAGAGGATCTCCCACAAGACCTCAAGATCAAGTTTCTTTCAGAGGCGAGGATCCTTAAGCAGTACGATCATCCCAACATTGTGAAGCTAATAGGAGTCTGTACACAAAGACAGCCGATTTATATAGTGATGGAGCTTGTGCCAGGTGGTGACTTTCTGTCCTTTttgaggaagaagaaggaagacCTTAAGACAAAGCAGCTACTAAAGTTTGCTCTAGATGCAGCTGCAGGAATGGCCTACCTGGAGCTTAAGAACTGTATCCACAGGGATCTAGCTGCCCGGAACTGCTTGGTGGGGGAGAACAACCTGTTGAAAATCAGTGACTTTGGCATGTCACGTCAGGAAGATGATGGGATTTATTCATCTTCTGGCCTCAAGCAAATTCCTATCAAGTGGACTGCACCAGAGGCACTTAATTATGGGAGATACAGCTCAGAGAGTGATGTGTGGAGCTATGGGATCCTGCTGTGGGAGACATTTAGCCTGGGAGTATGTCCTTACCCAGGCATGACCAACCAGCAAGCCCGTGAGCAGGTTGAAAAAGaggCTATTGCACATCATTTTGATAACTGGACTGCTACTGTTCTGCATGGGCTTCTAAGCAAGTAAGAGATCCAGATGTTacattattatgtgtgtattttactTTAAAGTTCTCTGAATTATCAACCAAAGCCAAATAATCTCAAATAATTTATCTCTATGAACGTTTCagtttgtgattattattttatgacaatgtattttgaaaaatgaactTGGAAAGTAATTGATGCACAATTAGCTTCGGAATAATTACATGAAATCATCCATTGTCTACTGGGAAAAACTGAAATGCCCTTTGCGGTTTAATTCTCTCTTCTGATTGTTAATCTCTGCTACTTGGTTGAACAGTGCCTTACAAATGATTTCCTCTGAACTCctgagtaataaatgaaattattacttttataaGGTGTACTCTGACCACATTCATTTGGTATTTTGTAAATACTGTTGTAGATtctataatgtaataattttgtaGGTGTTTTTTGTGCAAATCATAATGAATTGAAAGTGTCAATGACTTTTTAGTTTCTGTGTGGCCAGGCATCACTGTGTTCtcatataataaaaacatttgcacGTTTGGAATATGTAAAAATCATCCTGGTGTCACCtatattgttttgtttgaaaGTGTTGGCCGTCTTGTGAAATGTCTGTACTGACTGATCCAAGCTCTTGACAGAGTTTATATCATTCAGCACTGATTCATGTACTCATTCAGGTTCCTCCATCACATGATAGAATACTACCAGTGGTTTCTGGTCAGATGTGGTGACCTTACATCATTAAAACTACTGCTGAGTGAGGTCTTATGTTTTCCccttaattttatatttggataccagacattttatttatttcaaataactgtttttctttgtagttttcttatttttatattgttcatCATATCTCTTACTGTCAATGTATGTTACGTGGTATATTGATTTTATCTCACTACACTGACCTGCCTATTTTCTTACCTTGTTGCACCATATGACTTAATATTCCAGCTGTAGAGAAATGCCAGTTGTCACagtgctgtacaaaaacataatgcataataatattACCATAGTGATTCAAGAACTAATTTTTGGCTTGGTTGGGAATTATGTTTGTGATGTGTATTTAATCCTATATTACTGGTGTTGCCATTTATTACCATGTGTAGAAATATTTTCATAGACTTAGCTTGagtattttcccataacagacCTTTTCGAATTTTGATACTTTGATTGCACCTTTGGCCATGTAGGAAAATATTCCATTGCTAAACATTCCTATAAAGCTAATGGTAGGACTGTAGTCAACCCCTACAAATTTTAGATGGAATATGCattgttgttttggtttttaaattatgttaaataaactaaCTACAaaaagca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU456303 lncRNA upstream 88467 10922884 ~ 10937401 (+) True G384887
TU456279 lncRNA upstream 240934 10784701 ~ 10784934 (+) True G384868
TU456278 lncRNA upstream 242069 10783404 ~ 10783799 (+) True G384867
TU456269 lncRNA upstream 335227 10690140 ~ 10690641 (+) True G384859
TU456148 lncRNA upstream 416251 10608952 ~ 10609617 (+) True G384740
TU456323 lncRNA downstream 701 11096842 ~ 11097935 (+) True G384906
TU456400 lncRNA downstream 20237 11116378 ~ 11116582 (+) True G384973
XR_004577443.1 lncRNA downstream 30242 11126383 ~ 11127885 (+) True LOC117596264
XR_003403219.2 lncRNA downstream 34735 11130876 ~ 11131867 (+) True LOC113531091
TU456405 lncRNA downstream 48602 11144743 ~ 11145027 (+) True G384977
XM_026921623.2 mRNA upstream 199892 10785557 ~ 10825976 (+) True ppp1cc
XM_034300544.1 mRNA upstream 647730 10367262 ~ 10378138 (+) False arpc5lb
XM_034300546.1 mRNA upstream 647730 10370497 ~ 10378138 (+) False arpc5lb
XM_034300545.1 mRNA upstream 649399 10367257 ~ 10376469 (+) True arpc5lb
XM_026922385.2 mRNA upstream 684364 10320064 ~ 10341504 (+) True cabp7b
XM_026922116.2 mRNA downstream 122917 11219058 ~ 11274500 (+) False mapkap1
XM_026922115.2 mRNA downstream 123791 11219932 ~ 11276976 (+) False mapkap1
XM_026922117.2 mRNA downstream 140746 11236887 ~ 11276976 (+) True mapkap1
XM_026921450.2 mRNA downstream 201839 11297980 ~ 11326055 (+) True ajm1
XM_026921453.2 mRNA downstream 201839 11297980 ~ 11326055 (+) False ajm1
TU455978 other upstream 646203 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 1257832 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 1654338 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 1654731 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 1656540 9369261 ~ 9369328 (+) True LOC113531687
XR_003403209.2 other downstream 201839 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 2725647 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 2729709 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 4265217 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 4938682 16034823 ~ 16038605 (+) True LOC113531248

Expression Profile