RNA id: XM_026922405.2


Basic Information

Item Value
RNA id XM_026922405.2
length 2873
RNA type mRNA
GC content 0.39
exon number 8
gene id im:7138535
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 13744586 ~ 13751823 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

gGTGCAGGTAATTTCTGTTTGCATGATCTTtggaatagaaaaaaataaaaataaaaataatttcctgATCATAGAATAAAAGTCACGTTAAAAGTCCAAATCGAATCCAAAGCATGTTGATTAGTTTACCTTAGGCTTGGTAGGCGGCTCGTGTGTTTATAATCTGCTGGAAAGTCTGGATCAGGAAGTAACTCGGACAATTCTGTGGAAATATAATTCAGTTTccaaggcttttttttattttgggaaTGGAGCGAGAGTTTGGGACAATAGAGGCTCTTAAAGCCCTTGGATATGACAGTGATCTCTGTAGGACTCGGTGTGAATGTGATGAACTGCCATGTCCACTGCTTTCCTGGCTGATGCTGGAGCTGAGAAAAAACTGTCCAGAACTTGGAGGACACAGTGGGACCATACTGGCTGGGGAACTGAAAGAGATCCTGAAAGTCATGTTGTATCCTTATGACCCGTTCAACTCAGAGACTCTGACCCCCACTCATCTCAAAAGAATAACAGAGTTCCTGGTGTCCGAGTTACAAGCAGCACGTATGCTGAAGTACAGAGAGTGCAATCCGGAAGATATTCAGCCTCTGAGCGAGACGGGCAAAGAGCAGAGACGGACAGAATCTAACCCAGATACTGAGAATGAGACTCAGTTAGATGACAAAGAGGTAATGAAGGAATTGTCAGGGTTGTTTCAGGCCCTGGATATGGATCCAGCCTCGCAGCTCAGTGATGTCTACTCGCAGGTGGAGGCACGACTAGCGGTGTTCCCAGAGGGTGAAGTGCAAGAGCCGTTGCTAAAGACTAATCTAAATTCTACACAATGGAAAGCGCTGTATCAGATTAACCGAACCCTCTGCAAGGACTACGAGTGCCGTCGGGAGATGATGATCAAACGCTTCCACGTCACGCTCCAGTCATTTGCATGGGGAGAGCGAGGAAAGGAGCGCAGCGCTATGATGTCCACCGCACCCCCGTTTACATCGCCGCTTGAGTCGTCCGTTTCCGTTCCGCTGTTACTAGCAGCTAGAGAGGATCAGTCTTGCATTCTGCCTGTGACTGCAGGACCATCAACAGCCATTCACAAGGTGCTGATGGGTAGCGTGCCAGATAGAGGAGGTCGACCTGGAGAGATTGAACCTCCTATGCCAATTTTCACTCGACGTAGCGAAGGAGGCGACGGTCAGAAGCgtcagaaaaataaattcaagaAACGGGAGTActctgggaaaaagaaaaacaagaatagATAGTAGCCTGAATAGATACTCGCATGAACCTGAATGCTAATCTTAATCAGAATAACTTCAGGCTGTTATGTTGCATACAGGGTATAatgttatgtatataatattctACCTGTTTGATTCTCATTAGCATTAATTATCATCTACAATCATATAGAGGGAGACGTTTGgctttaatgatttaatgactACATGTGCACTATGgagattataattttatattttgatgttATATTATGTTGGTATATAAATTTAAAGACTACAAATTATGCATGATTATGGTAAAAGCTTGCACTAGTCATCTGCGTTCCTGGTCATTTGGGTGATACCCTTAAGgctacatcttttgtacctttagtatatTGTGTGGATATTTTTGTGTAGTATATTACTCAAAGTTAATTAAAGGTACATGAGAGGTTCTCGAAGTCCAATTTTGTACCttcaatcatttttttattcccatataaaagatacacactaaaggtacaaaagatggtATCAGCCTAGTGACAAGCGAAGGTAGAGAttagttctttttttctgagagtgtaataTACAGAAGAGTGAAATCTACAGAAATCTTTGCACATAGATCTATAAACAGATTCGAAGGcaacatattacatttaaacatgtgACTGTTTGGACAGTTCACTTCTTTGTAATGCTTTAATTTGAGTTCATTACTGACAGCTTGTCTACACCCCTGGAAGGGATTGAAACTTGAAAATccttatttattcttttacttaATCATGCTGTGTTGATTCAGCAATAGGCCACTGATAGGTAAGAGTtgattcagtttattatttcatttcaatctTGCTATGAGAAAGGGGGATAAGCAAGTGGAAACAGACTATAGTagcaagtcttttttttttttcctagattttttttttttgtttatttatttaatttttattataaggGCAATGTTTCATTCAGCTGTAGACCTGTTTTATTTCAAGTCCAATATCTAGATTTCTTGCTTTTCTGTTATTAAACATGGTTAAATAGAAGTATCTGTAGTCGTGGTCCTGAGATGGTTAAGGGGAATGTTTCTTTCAGCTGTAAACCTGTTTCATTTCAAGTCCAGTTTCTAaatttcttgcttttcttttgttaaagagGAGTTTCTATAGTGGTGATGGTGCTGAAATGGTTAAGGGGAATGTTTCATTCAGCTGTAAACCTGTCTTATTTGAAGTCAAATATCTAGATTTCTTGCTTTTCTCTTATTAAACCTGGTTAAAGAGGAGTTTCTGTAGTGGTGATGGTGCTGAAATGGTTAAGGGGAATGTTTCTTTCAGCTGTAAACCTGTCTTATTTGAAGTCCTGTTTCTAGATTTCTTGCTTTTCTGTTATTAAACCTGGTTAAAGAGGGATTTCTGTGGTGATGTTGCTGAAATGGTTATGGAGAATGATTCTTTCAGCTGTAAACCTGTTTTATTTGAAGTCCTGTTTCTAGATTTCTTGCTTTTCTGTTGTTAAACCTGGTTAAGGAGGAGTGTCTGTGGTGGTGGTGCTGAAATGGTTAAGGGGAATGTTTGGTCTGGTCACCAAGGGCAACATGGctagctccaaaataaaaccagcagAAACTTTGCAATCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU457894 lncRNA upstream 6901 13728187 ~ 13737685 (+) True G386284
TU457843 lncRNA upstream 86498 13655008 ~ 13658088 (+) True G386246
TU457741 lncRNA upstream 236581 13507398 ~ 13508005 (+) True G386147
TU457730 lncRNA upstream 266808 13477414 ~ 13477778 (+) True G386136
TU457662 lncRNA upstream 380998 13361565 ~ 13363588 (+) True LOC117596226
TU457948 lncRNA downstream 90520 13842343 ~ 13842646 (+) True G386330
TU457960 lncRNA downstream 103035 13854858 ~ 13855094 (+) True G386342
TU457975 lncRNA downstream 124115 13875938 ~ 13876193 (+) True G386348
TU457977 lncRNA downstream 139180 13891003 ~ 13892625 (+) True G386350
XR_004577400.1 lncRNA downstream 150161 13901984 ~ 13903993 (+) True LOC117596231
XM_026921502.2 mRNA upstream 31355 13707657 ~ 13713231 (+) True napaa
XM_026922144.2 mRNA upstream 41181 13695502 ~ 13703405 (+) False LOC113531401
XM_026922404.2 mRNA downstream 87 13751910 ~ 13764085 (+) True LOC113531586
XM_026922443.2 mRNA downstream 55064 13806887 ~ 13810554 (+) True pex12
XM_026922444.2 mRNA downstream 55684 13807507 ~ 13810554 (+) False pex12
XM_034300462.1 mRNA downstream 118828 13870651 ~ 13874909 (+) False ncf1
XM_034300461.1 mRNA downstream 118828 13870651 ~ 13874907 (+) True ncf1
XR_003403209.2 other upstream 2433733 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 3364921 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 3976550 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 4373056 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 4373449 9371060 ~ 9371137 (+) True LOC113531672
TU457909 other downstream 69965 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 74027 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 1609535 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 2283000 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 2396537 16148360 ~ 16148432 (+) True trnam-cau_49

Expression Profile