RNA id: XM_026922413.2


Basic Information

Item Value
RNA id XM_026922413.2
length 6704
RNA type mRNA
GC content 0.46
exon number 9
gene id LOC113531592
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 6962210 ~ 7058199 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

cacacacacacacacagtcagtgagCAACAGGTAGACTTGCTCCATGagctccccacacacacactttgtaaacTTCTTTTCACGCACCCCGCAGCCGTGTCCGCACGCCTTCCACGCGCTTTACCACTGAACAGCTTTCCGACCGCGTGTTTACAGAGACTTTCCTCTGCGACACACGGCTTGGAGAAGGAGCTCGGATTTGTGATCAGAACTTCCAACTggtggatttttgttttttttgtttggttttttctGGAGGGGGTGTTAACTGTGAACAGGTTTAATATGACGGCCGGAGGAACGTGCGCAGGACCGACTGGTAGGAATCGCACCTGATTACACACAGCGATtcattcacctttttttttttttttttttaacatcacaacCAGGACTAAACCTTCTCTTCATCAGCGCGAGATCTGCTCCACAGTGTCCACACGAGTGCTCTGCTTCTGCGCTGAGGAACCGGCGGTGTAACGGCGCGCGTGAAGCCCGAGGGGAAGTCACGCGTTCAGGTTCACGTTCTGCGTGTGTTTGCGTGACGCAGCGTGGAGATTTGTCGGCTTCGGATAACCGAGTTATAATCAGGCCACCTGTTGAATTCTAAGGGAATGCATAACCGCTGAAATGTAACACCATCCAATGGAGATCTATGAGTGCATGATTAGGAAGGAGAGATCCAAACCTTTCTGGCTGCCTGAGATCTGGTGCCTGCTTTCCCTGAACTGAGAAGAAGCTTGAAGGCAATTCGGATGACTGGAAAAGCTGCACACGTTCGATGCACACGTTACGAGTCCTGCTTCCAGTCAGTGCCTTCATGCTGTCTTACTCTTACTCTGCAGCTGACACAGGATAGCCAACACTAATTAATTGCCATTTAATTAGCATTCATGTTCCAACATAAAGTGATGTCACATGTTACGCATTTTATTTTCCACCTTAACAATGATCACTGCTTTTCCTGAGCTCTTGCGAGAGCTGTCATTACTTAAGGATTTGCCTTTTCCACGCACATGTCTCCGGTCCGAAGCAGACTTCTAGTGCTGATTGAAATCCTTCAGAAGTTCAAGGAAATAGAGTTGCATCTCAAGTTCGGCCGTGTCGACGCACCCAGACGGACCCTGGAAATTTTCTCAGTGTGCCAGTGGTTCTGAACAGTGCATTATGCGTGCCTGGGCCCCGAAGCTGCAGCTGGGTCAATGAGGCTCGCCGCACAGCGCCTGGCCGGGCTCTGGCCGTGGCTGTTCACGGCCGCCCTGCAGGTGGCGCTGGGCCATGCGGGCCTGGAGGTGGCAGCGACCCGCGCCCTCATCAAGGTCACGCTGCTCAACCCCAAAGCCACGGTCAGGCCCATCACCCTGGAAGGGGTGTTTGCTGGAAGCAGCAGCGGATTCGCTGAGGGTAAActcatgcagtctcATCCGCTGTCTCTGTGTAACACCAGTGAGGATGAGCGGCAAGAAAGCTTCTTCATCAGCATTGTTAAGCTGGAGAGTCCAGAGAGCAAAGTGCCCCAGTGCCTGCCACTTCTGGAGAAGgcTCGGCTGGCTCTAAACAGGGGAGCTCAGGCTGTCATTTTTGACATCACTGATGATGTTAACGCTGCTATTGAGttgAATTCTGGCTTCCTGAAGAAGCcggtggtgatggtgaaggcAGCGGACGCTGAGGAGCTGATGGGACTGGTCAATAAGAACGAGGAGGCCAAGGTTGAGATCAACATCATGATGGAGACACCCAAATGgCCTCATTATGAAGTGGGAATCCTCTTGACAGTCGTCTTGGTTGTGCTGGCAATCATTATGATCTTTGCCTTTCGTTCTCGCTGCAGGTCCAACAGAACTTGGGACTCGGTGCATCAGCAGACCATGCGGGCCATTAGCAGGCTGGAGACGCGTACCTACAGCTCTCAGGGCTGCTCAGGAGGATCCCATCATCCACGTGGTGGCCGAGGGTCAAACAGCAGCTCCAGCTCTGGCCCTATGTGTGCCATCTGTCTTGAGGAGTTCCTGGATGGACAGGACCTGAGGATCATCTCATGTGCACATGAGTTCCATAAGGAGTGTGTGGACCCTTGGCTGCTTCAACACCGGACCTGTCCGCTCTGCATGCACAACATAATGGCAGGTGCAGAGCCGAGTGGCCGTCAGCCTCAGCGAGTTCGTGGACATCCACCGCCAGAGCACAGCCAAGCTTTTCTGCACCCCCACCCACAGCATTACACAGCTTCTCACTCTTTCCCCCAGCACCCCATTCCCTTCTCCCTACGACCCCATTACCCCCGCACCCTCTCGGGACCCTATCCCCAGCTGGGAGCCTATGGCGGCTCCCCTCCCTACCACACTCGCTTATTGAGCACCAGCTGCAGCTATCATCTGGCCCCTGATGGGCACCGTGCCCGACCTCGCCACAGCTGCCGCAACGTTGGGCACCACTACACATCACCGCGTCGTCCGTGCCACCACTGCCATCCCAACCGGATGCGGCATCAAAACCACCACCAAAACCAGCGCCACGGAGGTTCTCAGGGGCGCCAGGATGAGGGTAGCTGCTCAGGGGCCAGCTATGGCACGGAACGCAGTGGCTACTTCCCTGATGGACCTGGCAGTGACTCAAGCTCGGGCCCATGCCACGGCTCATCCAGTGACTCAGTGCTCAACTGCACTGATGTAAGCCTGCAGGGTGTCTACGGCAGCTGCTCCACCTTTCGTAGTTCGCTCAGCAGCGAGTACGACCCATTTGTCTACCACAATGCAGGTTCTGAAGGTCCGACAGGTAGTACCAGGCCCCGATCTCTAGATTCAGGAGTAAATCAGACTAGTGAAGGGCTTGGGTTTGAAGAACCACAGCAGCAACAGGCTGTATTCAGCCATGTGCACTACCATAGACACAGACACCACTATTACGAAGAGGGCGAGCCCAGCCAAGGACCAGGAAGAGGCTCTGATGAAGAGCAAGGGACTTCAGTAGTAGCAGCAGGTAATTCACCCATGAGTAAAGACTCAACTTTGTGTCAGGGGGCACATGTTGCCTGCCATTGCCCCAAAACGGACCCTATAGACAGGTGTATAGACAGGTGTGGACCTCCTGGTGGAGTGGAGGATCGGGACGCAGCTCCTTCATCCCCCACTTCCTCCTTGCCTGGCACCTCAGTGCTGATCCCTACACCAGCCTGCTGCCACCCAGGGCACACGCACTGCCAAAAAACCACCAGCTGCAGTCTGGAATCTTCTGCCCCACCCATGCCAGCTGTGCACTTCCATCAGAGAGTGGACCTACAGGACGATTGCAGCATCCACATCCACTATGGGCAAAGTCCCGCAGGTTACTGCTGCCCCCCTCCTCTGGGTGCAGCATCCACACTGCTGCCCGTACCTGTAATCCTGGACTCAGGTGGGCTGGCAGAATGGCCCTGCTGCAGGGGTGCACGAAGGGGGTGGCAAAAGCAGGTGCAACAGGCTCATTCTGAGCCACAGCTAATGGGGACAGGCACTCTATTGGACACACCTCTGTGCAGAGGACATCACAGTGCCGGGCATGAGCTGCCCACAGAAATCTGTCTCTACTGCCAAAGTGTACACAATAATCAGGGATCAGAGGAAGAGTCTGGTGTTTGAAAACTCTCTCCATCCCCAAACCTCACGCTGCTACACAAGAGCCGAAATGGACAAACGAATCGGccatctctcccactctctgtctctcgctcactcacttTTTTTCACAGTCTTCCAAATAATTCCATATCTCAAGACAGGCAtcatttttcagcatcactCAGTTCCCACAATTGTTCTGTAACTAAAGTCTGAtgctcttagaaaaaaaagggttcctcatgggttctttggatggttaaaggTTTAGTTTTTGAAAGGGATtttattttggatattttttcttctgtaagtttttcttttattggaaCCTTTACACAGAGATTTCTCCAAGAGGCAAATCAAAAAACCCTTTAGGGCACTAGAAGgaacttttttctaagagtataaGGGTATGTCAGTTCAGACTCAATTCCAGCAGGTGATAATTGATGGTTAATGGTACTATTGATGTATTATGTACTTGTAACCCAAGGTTCTGaatctattattttctgtttttatcatGCATCACAGGTTTACCATGCATCACTCGGTGAACTGAGAGATGTTGGCTAGACCTTTACAAAAGGGTGAAAATGATTTAtctcacattattttttttccttttggaaACCGTTCaatatgttcattaaaaaaaacaagtcccAGAATTCCTTAGTTACCTCCATGCATCACCGCAAGCTGGGGTAGCAGAAGCAGGCCCCTGTCTTTATCTTCAAAATTTCCCCTTTTGGGGAGTTCGCGCTTCACAATACACTGTAATGATCCATTTTGGTCATGACAATATTTCATGTTAGTGAAGAAAAAGAATACCCATGTTGATTTTGTATAGCCATTACTGGTAAAATAATACTCTTAACCCCCATATGACTTAATATCCTGTCTGCTACTAGAACTACAAATTAGACCCAGCGGCTCCCTTTTACTCATCTGATCTTATCTTTGCAGAGCACTGAACACACCCCAACGTATGATATCATCAATCAGAGTGGAAGGTGTGCATGGTTGCGGTTAGGATGTCGTCCGAAGTGATGATGTCACTCAGTGTTCGTGCTGCACATGAAATAAGtgcctgcctgtctctctctctctctctctctctctctctctcagcctacCTCAGATAACCAATCAGAAAAGTCCTGTTCACATCACGGTACTTCAAAAGTAAAGCTCTTGCCTGGCACCCTCTCTGTTTACTTCTGATAAGTGAGAGATAGGGTGCTTTACATAATCTGTCCtcgaaaaaaaaagatcactgaCTGTTTGGAGGTCATTTAGGTTTCGGGTCTTGTGCTCGTTAATTTGAGAAAGGCAGCTGTCATTTGTGTCAcggttttttgtttgtcttttatgtcctttttttgttttctcggTTAAAACGAAGCAAACTGACTGAAAATGTTAGGGTTGGCAAGGATTTCAGAACCTACTTTTGGTCATTTTTCAGATTCTTGTCATTTAGCTTGAGCTGAGGAAGCACTAAATTACCCACGAGTACATGCTTTTACCTCTGACCCTTTACCTCGTGTATGACTCGCATATATCCATACGGATATGGATCATTTCAGAAATGGTCGCCAGCCTGCAAGCTTGCCAAAGGTGCCTCTTTTTTAAACTTGCTGCAAGATTTTCAATGTTTTCATTACTTCAAAATGCTGTAATCAGTGTTCCTTCAGAAGTTGGTATGCTTTATCCTtggaaatatattacagtatattctaTTTAGAATATATGAACAGCACACTGCAgtcattttgcattttcataACCAGCAGGTAACGTCTATTGTTTAAagacagcaaagaaaacagccctttaataattatagaataaaataccaACAACTGTCACAAAATCAATttatataatatggatttgcTCTCATAATTTAGCCAAAATTGTTATTATGATTCTAATTTGGCATGATCTAATTGGCATGATTCTAATTTTAGCATCATGTCTTTACTTTTGTTGCTTCTGTAGTTGTGGACCTGTACGTTTTCACATGCGAAGTTTTTAATTTCCTCTTTCAAGGTCAGACTGTTTTAATTTCCTCTTTCAAGGTCCTCTTTCAAGGTCAGACTGgctagaaggaaaaaaatgtcatgttgtTGGTCACCTTTCTAAAAGGTAGTAAATTCACACAAATCAGAGCAAAGGTCAGGTCATCAGAGTAAAATGTTCTATATAGATAAACCATGGAATTAAACCTTAAGGgttggttattttttaaataaataaattaattaaaccaCTATTGATCCTATACATTTCAACTGGTGATACTCATAGAGTGACTTATTTAAACCaaagttaataattaaatggaaaataataaaaaggatATGAGATACCCATCTTTTCAAATGTTAGACAGTCGTTTGATTGTCTCATGCAGTCATGTTGTCAATAAATCTTTGTTTGTGCCTTGAATTACCATGAACCTGCCTTACAGGAAACCTGCTTTGCACTTCTGCGTTGCCTTTATATTCATGTAATGTTGGCCTGAACGTTCTTTCATTACAGGCTTTGTCTTAAATTTACAATTTCACATGCAGCactttggaaaaatgtttaaaaaaaatgtaagagtGAAACCTGAAGCAAAACAAGCTAAGCATTATGTAGCTACTAGTACTGGGAAACATCATAGAAATCAATGAAATGTCAATGAACACTAAGGGTGAATTTATctcctttgtttatttttttactttcatttatttgctCTCTTTTCTGATGGCGAATGAGCTGAAACTGCCTTTTGAATAGAGCAAACTCCCTCCAGAATACCGAAGGGATATGCcagtatattttcaatattttgtgtaaaaaaaagagaaagaaaaaaacattaatgagataaagtgttgtattttatatataatagacattttttatataataaaaaaaaattcaatatggTAATGTcactaatatatttatttactaatataTTTATCCAGTTTGTCCAggtttaagaaaatgaaaaatgtcatttttccctttttttggAATTTTATCTTTATGAAACTTACGACTGCCATCATAGATGTATCAACTTAGCATCATTCCaa

Function

GO: NA

KEGG:

id description
K15694 RNF43; E3 ubiquitin-protein ligase RNF43

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU453360 lncRNA upstream 7282 6951719 ~ 6954928 (+) True G382351
XR_004577428.1 lncRNA upstream 146835 6811118 ~ 6815375 (+) True LOC117596241
TU453300 lncRNA upstream 151643 6810353 ~ 6810567 (+) True G382292
TU453282 lncRNA upstream 152669 6807179 ~ 6809541 (+) True G382274
TU453261 lncRNA upstream 293825 6666639 ~ 6668385 (+) True G382257
TU453390 lncRNA downstream 8614 7066813 ~ 7067761 (+) True G382380
TU453632 lncRNA downstream 50527 7108726 ~ 7109709 (+) True G382606
XR_004577398.1 lncRNA downstream 96395 7154594 ~ 7157229 (+) True LOC117596228
XR_004577397.1 lncRNA downstream 96395 7154594 ~ 7157229 (+) False LOC117596228
TU453653 lncRNA downstream 202054 7260253 ~ 7261090 (+) True LOC113531088
XM_026921613.2 mRNA upstream 30291 6831684 ~ 6931919 (+) True LOC113531112
XM_026921457.2 mRNA upstream 177822 6777992 ~ 6784388 (+) True hspb1
XM_026922170.2 mRNA upstream 188303 6691036 ~ 6773907 (+) True srrm3
XM_026921478.2 mRNA upstream 274234 6668932 ~ 6687976 (+) True LOC113531024
XM_026921929.2 mRNA upstream 299960 6658053 ~ 6662250 (+) True c1qbp
XM_034300569.1 mRNA downstream 21908 7080107 ~ 7149766 (+) False mtmr4
XM_034300570.1 mRNA downstream 29559 7087758 ~ 7149766 (+) False mtmr4
XM_034300568.1 mRNA downstream 31917 7090116 ~ 7149766 (+) False mtmr4
XM_026921459.2 mRNA downstream 42043 7100242 ~ 7149766 (+) True mtmr4
XM_034300567.1 mRNA downstream 55777 7113976 ~ 7149766 (+) False mtmr4
TU452818 other upstream 578550 6380695 ~ 6383660 (+) False ubb
TU452787 other upstream 719513 6223168 ~ 6242697 (+) True G381893
TU452724 other upstream 781297 6177804 ~ 6180913 (+) True G381835
XR_004577455.1 other upstream 910313 5990022 ~ 6051897 (+) False zmp:0000001168
XR_003403276.1 other downstream 218646 7276845 ~ 7276973 (+) True LOC113531674
XR_003403275.1 other downstream 219400 7277599 ~ 7277727 (+) True LOC113531673
TU454294 other downstream 1084412 8142611 ~ 8144880 (+) False spns3
TU454332 other downstream 1124192 8182391 ~ 8213107 (+) True G383217
TU454617 other downstream 1532168 8590367 ~ 8591155 (+) False gig2o

Expression Profile