RNA id: XM_026922478.2


Basic Information

Item Value
RNA id XM_026922478.2
length 2017
RNA type mRNA
GC content 0.45
exon number 15
gene id LOC113531633
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9389442 ~ 9397886 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TTCGTGTGAATGTCTAAACGCCTTCTGGATGCTTATTAGTCCCGTACTGCACTACACGGCGTGAAAACAGCATTTACCAGGTGTAGTGCCCTCAATGTAGGGAGAAAGGAGGCGTTTGGGATTGAGCCAGTATGTGACGTTCCAGCACCTGACTGAAGCGACTGAAAAAGTGAAAGTCAGCAGTTTAAAAATGCGGAAAAAGGATTAACATCTTCGGTGTGACTTGCATCCTGGAATGTTTAGGAGAGTGGTGGTGCTAAATGGTGCTGCAGTTTGGAAATCAGCactaattcccacccactggCAGGACAAGACCGGTTCAGCTGCACTTGATTTTGCTGAAGAAATCAAATATTTTGacaaatATGTCGCGGCAGTTACATGCACGAAGGCTTGAGAAAGTGGAAGAGAATGTGTGGCTGGAATTTACGAAGCTAGCTGCTGAGTATAAGGTAGTGAACTTGGGTCAGGGGTTTCCCGACTTTTCTCCTCCCTGTTTCCTCTTGGAGTCTCTCTGCAATGCTATCAAAGGAGGACCCTCCATGCACCAGTACACACGTGCCTTTGGCCATCCACGCCTTGTCAAGATCCTCGCCAAATTCTTTGGGAGGATTTTGGCGCGTGAAATAGACCCCATGCAGGAAATCCTGGTTTCTGTGGGAGCCTATGGAGCCCTTTTCTGTGCCTTTCAGGCTCTGGTTGATGAGGGTGATGAAGTGATCATTGTGGAGCCTTTCTTTGACTGCTATGAATCCATGGCGTTAATGGCAGGAGGAAAACCTGTCTACGTCTCCCTGAAGCCTCGAAAGGTCACTGGTCCAACTTTGTCCAGTGCTGATTGGGTGTTGTGTCCTGAAGAGCTGGCCAGTAAATTTAACTCTCGTACAAAGGCTATCGTCATCAACAATCCCAATAATCCATTAGGCAAGGTCTTTCAGAGGGAAGAGTTGCAGATGATAGCTGACCTGTGTATAAAGCATGATGTTATTTGCTTCAGTGATGAGGTGTATGAGTGGCTAACATATGATGGAgcaaaacatattaaaacagCAAGTCTTCCGGGCATGTGGGAGCGTACCATCAGTGTTGGCAGTGCAGGCAAGAGCTTCAGTGCTACAGGATGGAAGGTGGGCTGGGCAATAGGGCCAGGACACCTACTGAAACACCTGCAAAATGTCCATCAGAACTCCTTATATCACTGTCCCACTCTCAATCAGGAGGCTGTTGCTGTGGCTTTTGAAAGGGAGTCTGAATTGTTTGGCACAGACGAAAGCTACTTCAAACAGCTACCCACACAGCTCCAGGTCAAACGGCTCAAGCTAGCTGAGAGTCTGAGGAGCGTAGGGCTACAGCCCTTCCTGCCCGAGGGTGGCTACTTCATGATCACAGACATTTCCTCCCTGAAGGTTGACCTGAATGACCCAAGCTCCAAGAACGAACCCTACGACTACAGATTTGTCAAGTGGCTTATTAAAGAGAAGCGTTTGGGTACTATCCCTGTATCTGCATTTTACAGCCATGAAAGCAGAGCAGATTTTCAGAACTACATTAGATTCTGCTTTGTCAAGgATGACTCCACCCTCAAAGCTGCTGAAGATATTCTGAGACAATGGAAAGACCAAAAATAGATGGAATAATATGATCATCTCCAAAATGAGCTTTGCAAGTCAAATTGCTCACATATACCAGTATAGAAgaatcttgttttattttaactgtgTATAAATTAAACAGAGTTGTTTAAAATCATGAAGGtaaatttttgcacattttcttctcctctgtCTGTAGCTATATTTTACTCTGACAAACTGTTAGTCATCTTTGTAAAAACCCTGCTAAGTTGGTTACAAGTAAACCTCAGGGCATGTGCTCACGCAAGTCACTCACCAGTTGTAGCTGGTGTTACAATCATGCAATACATTGTCTTGCTGTTTTGTCACTTTTAGGTACAATGATTCCAGGTACATATGTTGTATCTTGTTCATAAATAAACCTGTCCTTTCCTTTGCATATA

Function

GO:

id name namespace
GO:0009058 biosynthetic process biological_process
GO:0030170 pyridoxal phosphate binding molecular_function
GO:0008483 transaminase activity molecular_function
GO:0016829 lyase activity molecular_function

KEGG:

id description
K00816 CCBL; kynurenine---oxoglutarate transaminase / cysteine-S-conjugate beta-lyase / glutamine---phenylpyruvate transaminase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455193 lncRNA upstream 46797 9342428 ~ 9342645 (+) True G383965
TU455189 lncRNA upstream 50296 9338933 ~ 9339146 (+) True G383961
TU455186 lncRNA upstream 51536 9337026 ~ 9337906 (+) True G383960
TU455188 lncRNA upstream 51992 9336910 ~ 9337450 (+) False G383960
XR_004577435.1 lncRNA downstream 56159 9454045 ~ 9456252 (+) True LOC117596253
TU455393 lncRNA downstream 88576 9486462 ~ 9486667 (+) True G384106
TU455412 lncRNA downstream 128425 9526311 ~ 9526518 (+) True G384125
TU455422 lncRNA downstream 163249 9561135 ~ 9561374 (+) True G384134
TU455437 lncRNA downstream 284427 9682313 ~ 9686604 (+) True G384144
XM_034300797.1 mRNA upstream 1934 9380586 ~ 9387508 (+) True surf6
XM_026922284.2 mRNA upstream 1934 9380586 ~ 9387508 (+) False surf6
XM_034300799.1 mRNA upstream 1934 9380586 ~ 9387508 (+) False surf6
XM_026922214.2 mRNA upstream 17370 9368344 ~ 9372072 (+) True rpl7a
XM_026922279.2 mRNA upstream 30554 9351540 ~ 9358888 (+) True c27h9orf78
XM_026922375.2 mRNA downstream 4169 9402055 ~ 9413856 (+) True LOC113531568
XM_034300528.1 mRNA downstream 19572 9417458 ~ 9429225 (+) True LOC113531574
XM_026921902.2 mRNA downstream 34642 9432528 ~ 9451287 (+) True prkaa1
XM_034300609.1 mRNA downstream 34682 9432568 ~ 9448612 (+) False prkaa1
XM_026922215.2 mRNA downstream 63731 9461617 ~ 9473291 (+) True kank1b
XR_003403285.1 other upstream 17912 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 18305 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 20114 9369261 ~ 9369328 (+) True LOC113531687
XR_003403288.1 other upstream 20539 9368831 ~ 9368903 (+) True LOC113531686
XR_003403287.2 other upstream 20878 9368489 ~ 9368564 (+) True LOC113531685
TU455483 other downstream 367854 9765740 ~ 9768036 (+) True G384178
TU455978 other downstream 980327 10378213 ~ 10379665 (+) True G384593
XR_003403209.2 other downstream 1900094 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 4423902 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 4427964 13825850 ~ 13828148 (+) True G386325

Expression Profile