RNA id: XM_026922535.2


Basic Information

Item Value
RNA id XM_026922535.2
length 1929
RNA type mRNA
GC content 0.50
exon number 8
gene id drd2b
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 15097068 ~ 15138075 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GCGCGGCGGTTATTTTCGCGCCACTAGTTTCAGTCAGAAGTTGAGAAGCGGCTCAGGCAGAGTTCATCTCGAGATACAGCTTGTGTTAGCAACAAGATAATGTTTTACCGTCTGTTTTTTTCCAGACGATAACGTTGTGAGTGCTGCAGGAAACAGTTATTACCGCTTGTGAGAATGAGAATGGGCAGACGGTGGGAATTAAGGACCCTGGACGCTGAGAAGCTCCGAATATAAACGACAGGACTGTAAACCCGAGACCCTCGGGGCAGGAACTGGTCACTCCTGCTCAAATCCTATGGCCTGAAGtttcagaCATCTTTCCTGGTAGCAGCTCATGGATTTCCTCGCGGAATATGGCATCAATGAGACCTACCATGACAACACGAGTGAGGCTTTCAATGGCACGGACATTGAAGCCAAGCACCAGTACAACTATTATGCCATGCTCTTGACGCTGCTCATCTTCGTCATCGTCTTCGGCAACGTTTTGGTGTGTATGGCCGTCTCCCGAGAGAAAGCACTGCAGACCACCACTAATTACCTGATTGTAAGCCTTGCTGTGGCAGATCTCCTGGTGGCTACATTGGTTATGCCTTGGGTAGTGTATCTGGAGGTGGTGGGCGAGTGGCGCTTCAGTAAAATTCACTGTGACATTTTTGTCACTCTGGACGTCATGATGTGCACGGCCAGCATTCTTAATCTGTGTGCAATTAGTATTGACAGGTACACAGCTGTTGCCATGCCACTGTTGTACAACACACGGTACAGCTCGAAGCGCCGTGTCACCGTTATGATCTCGGTGGTTTGGGTTCTGTCCTTTGCCATCTCCTGCCCCCTATTGTTTGGGCTAAACAACACAGCAACACGTGACGATGCTGTGTGCGAGATTGCCAACCCAGCCTTTGTGGTGTACTCCTCTATCATGTCCTTCTACGTGCCCTTCATCATCACACTTCTCGTCTACGTGCAGATCTACGTGGTGCTGCGCAAGCGTCGGAAAAGAGTGAACACCAAGCGCAGTTGCCAGAGGACGGATGCTGAGCCTCAGCTTCCTCTCAAGGAAAAGTGCACTCACCCAGAGgatgtgaaactctgcacagtcATTGTAAAGACCAACGGGAGCATGCCtgccaaaaacaagaaaacaCTGGTGATAAAGGAGGTGATGCAGCAGGACAGCAATGTGGAGGTGGGCCTCATGGCCAGCCCCAGTCCTCcagaaaagttaaagctggcacCTGCTGCAGCAGGCTCTATGATGGCTAGTCAGAGTCGCGCTTCACCCTTGCAAGATGAGTGGCAGCCCAGTAGTGACGAGAAGAACGGCCATGCCAAGGACTCCCAGATGCCAGCGGGGGCCAAAGCTTTTGAAACACAGACCCTGTCCAATGGCAAGACACGCACCAATGTCACCAAGCCCATGAGCAAGAGAAAGATGTCACAGCACAAGGAGAAGAAGGCCACACAGATGCTTGCCATTGTTCTGGGCGTTTTCATTATATGCTGGCTGCCCTTCTTCATTACTCACATCCTGAAGACCCACTGTGCTAGCTGCTATGTGCCTCTGGAAATGTACAATGCCTTCACGTGGCTGGGATATGTGAACAGTGCCGTGAACCCCATCATATATACCACTTTCAACGTGGAGTTCCGCAAGGCTTTCATGAAGATCCTGCACTGTTGAGTACGCCTTTGTGTGGGCGTAAGGTTAGTGCCATCATTTTCTCTGGCTGAGgtagaagactttttttttaaggacagAATAAACATCACAGACACAGGGGCTTATCAGCTTGACTCATATGAATGTAAATCCAGAAGTTTTATTTGGAGGTTTGAAGCTTTGTAGTTTTTAAAAGCCTCTGAAAAAAGCATCTGGCTAAAAAAGCCAGGGGGGCAGGGgatttggagagagagagagggagagag

Function

GO:

id name namespace
GO:0007195 adenylate cyclase-inhibiting dopamine receptor signaling pathway biological_process
GO:0071875 adrenergic receptor signaling pathway biological_process
GO:0007268 chemical synaptic transmission biological_process
GO:0005887 integral component of plasma membrane cellular_component
GO:0004935 adrenergic receptor activity molecular_function
GO:0001591 dopamine neurotransmitter receptor activity, coupled via Gi/Go molecular_function

KEGG:

id description
K04145 DRD2; dopamine receptor D2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458941 lncRNA upstream 161026 14934704 ~ 14936042 (+) True G387208
TU458926 lncRNA upstream 172203 14834919 ~ 14924865 (+) True G387196
TU458927 lncRNA upstream 228367 14856268 ~ 14868701 (+) True G387197
TU458889 lncRNA upstream 381013 14708856 ~ 14716055 (+) True G387160
XR_004577415.1 lncRNA upstream 913017 14152144 ~ 14184051 (+) False LOC117596237
TU459148 lncRNA downstream 25309 15163384 ~ 15233645 (+) False c27h11orf88
TU459154 lncRNA downstream 44238 15182313 ~ 15204882 (+) False LOC113531625
TU459156 lncRNA downstream 44238 15182313 ~ 15204587 (+) False LOC113531625
TU459153 lncRNA downstream 65388 15203463 ~ 15204587 (+) True LOC113531625
XR_003403270.2 lncRNA downstream 65426 15203501 ~ 15204268 (+) False LOC113531625
XM_034300511.1 mRNA upstream 180570 14862358 ~ 14916498 (+) True arhgef12b
XM_026921636.2 mRNA upstream 236324 14858557 ~ 14860744 (+) True tlcd5b
XM_034300876.1 mRNA upstream 236324 14858557 ~ 14860744 (+) False tlcd5b
XM_026921632.2 mRNA upstream 241127 14811104 ~ 14855941 (+) True mcama
XM_026921448.2 mRNA downstream 88270 15226345 ~ 15233692 (+) True c27h11orf88
XM_026921447.2 mRNA downstream 96844 15234919 ~ 15242995 (+) True layna
XM_034300431.1 mRNA downstream 96844 15234919 ~ 15242995 (+) False layna
XM_026922534.2 mRNA downstream 106930 15245005 ~ 15261736 (+) True sik2a
XM_034300939.1 mRNA downstream 109307 15247382 ~ 15261736 (+) False sik2a
TU457943 other upstream 1268920 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 1273013 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 3786215 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 4717403 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 5329032 9765740 ~ 9768036 (+) True G384178
XR_004577401.1 other downstream 223283 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 896748 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 1010285 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 1408066 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 1517594 16655669 ~ 16657113 (+) True LOC113531241

Expression Profile