RNA id: XM_034300511.1


Basic Information

Item Value
RNA id XM_034300511.1
length 7468
RNA type mRNA
GC content 0.47
exon number 39
gene id arhgef12b
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 14862358 ~ 14916498 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

TACTTCCCAAAAACGAGGGAGTGGTTCGTTTCCAGAGCGCAGGAATCCGTCGATCTAATTTTGCCGAAAGTCTGGGAATATATGgatttttacagatttctttGCTGGTTTTAATTAGACTTTTTTAAACGGAAATTTAACTTGTCTGGCATCATATGCGGGAGCTCATTCTTTGCGTTTCAAGGCGCTAGAATTCCCAAAGAGTGCATTTTCGGCGAAGGAAaaggaacaggaaaaaaaaaaaactactgaatTTCGGAAAAACATGGAGACAAGGAGGGGAAGGAGCGGACTAAAATGACTAAACCCAAGTTTACAGCTTCGGAATACCGCAGAAAAACACGGAATTGTTTTGTGGAGGATGTTTTGgtattaaagtaaaattttaacggtgtcttttttttccatccccCAACAAAGTAATTTTTTGGAGGTGAATTTCTGAATTACTCCAACAAGTCGCCCTGTTTGACATCAGAAGCATTCAGAAGTTGAGTTAAAGCGGAAATTCGGAAATGTCGGAATGTGAAGCCGCTTTAGACGGAATTACAATGAAACCTTCGGCACGGCGGATGTTTTGAACCCGCAAAttatcattcagctacaagggATACGAACCAGACAACATTCTTCCTGAAGGAGAAAAAGTGCCATGCTGTTCAGCTAAACCAAGCAGAGGCCTGAAACACAGCGAGGAAACAACTTTATAACgtgtttttcccccaaaatgagAGTTTTTCCGTGTTAATGCTAATGACACGCTACTTTACACCatactttgttttcttttcccacAGAAGTGAACGTTCACGTTGCCTGGAGGGCGACATtacgggaaaaaaaaacacgctaTTGAGGGCTACAGAGTAACATTTCAGACGGTTTTGTTCAGTGGGATACTTTTTAAAACACGGTTTAATGcgtgaaaacaaacaaattcaaGTTTTCCACATTAACGCTTGGAGTCGACACGAAGTCAGGGAGTCGTGTAATGCTGAGGCATTCGCTTGAGGGGGGAAAAGAGTATGCTCCATTTGCTAAACATTCATAATTCTGTACTATTTCCAACTAATTTAGTGCAGCTAAAGCTTCTCCAGGACTTCTGGATGTTTTTCGGGTCTTATTTCTCATAATTTTGCGATTTAAGTGCAAATGACACACTCCCCTAGCCTACCACTGAGCCGCGGTGAAGTCGCCTCATGTAAACTTACATAGGCTAGCTTAGCATACTTTTTCCGTTCGCCGTTCGTGACagacttttgttttttggatAATAAATAACCTTCAAAGTTCATCTTTTGGAGCACACACGAGTGTTTTACCTTGGTAAAATGCTAGTTGGATAAAAGCTGaaggaaaaaagcaagaaaCGGAAGCCCAATGAGCGGCTCACAGTCCACGATAGCTGACAGGTTTCCCAAAAAACCAACCAGaCCGGGAAGTATTCTCAACAAGGACCACCCCCCAGACAAGAAGCCCAAGAGTGAGAAGGTGTCAGTGCCTCCTACACATGACTTTGACCCCACAGggctTGTTCAGCGGTGTGTGATTATCCAGAAAGATGAGAATGGCTTCGGGTTGACAGTGAGCGGAGATAACCCAGTATTTGTCCAGCTGGTTAAAGAAGATGGAGCTGCTATGCGAGCTGGTGTTCAGACGGGTGATAGAATTATTAAGGTCAACGGGACGTTAGTAACACATTCCAATCATGTAGAAGtcgtgaagttaataaaatCGGGTTCATACGTGGCTCTGACGGTGTTGGGGAGACCCCCGGGCCTGCCGCAGATCCCCTTatcagagggagagggagatggagaccCTCTTTCCTCCCTCAGCTCCCCTCACTCCCCGGGCCCCACTGTAGCCGAGCgctcatcctcttcctccacctctCCCTCCGACCGCATCACCTCCCCACTGCCTGCATGGGAAGACAGCGGTGCAGTGTTTAATCAGAAAGTCGACATCCTGCAGAAGATGCTCATGAAGGAGCAGCAAGACCTGCAGGCTATGAAAGAGGAATACAGCAGAAACCCTACAGCGAGACTACTGAAGGACATCCAGGAAGCCCAGAAGCACATTCCTCTGCTTCAGGGCCAACTCAGTAAAGCCACCACGGCTGGACAGgaTGGTCTGCTTTCTCCGAGACCGGGAGAAGGAGATCCAGAGGAAGGAGGAGGGTTAGGAGACGTGGACGCCTCTCTATCCTGGCAGTATGACTTAGAATCACCCATGAACAGCAACTCGACACCGGTCACGCCCAGTATGATCCCAGAAAGCCCGTACCAAAGAGACACACCATGCCACAGCCCAAAGTCAACGCCGCGCATCAGCCTCAACTCGTGCCCGTCTCCCGACGGCGAGGATGTGGTCGACCTGGACTCGAACTATCAGTGCAGCGTGGGAAGCCCGTCGTCCCGTCTGCCGCCTCCCATCATCGGAGCTGAGGACGATGACTTTGACACCGAACAGGAGCAGATGAACGGCCAGTGTAGCTGTTTTCAGACCATAGAGCTGTTGAAGTCTCGGCCTGCTCACCTCGCAGCCTTCCTGCATCACGTGGTCTCTCAGTTTGACCCTGCACCTCTGCTGTGCTACCTCTACGCCGAGCTCTACAAGCAGAGCAACCCCAAAGAGACACGGCGGATATTCGGGGAGCTCCACTCCACGTTCATGGACCGAACAGCGCAACTGAAAGTAGTGGTGCCAGACTCGATCTCGGCTGACATGGatcgaTGGAAGCCTGACTTAATTCCAGAGGATGTTCAAAGACAGCAtgtgcagcagctacaggacaCACTCCTACCTGACATCCAGAAACACCTGGAAGACTTCAGACAGAAGCGCAGTATGGGCCTGACTCTGGCCGAAGCTGAGCTTAGCCGACTCGATACTGAGCGCGTGCGAGACCGTGTGGCCCTGGAGAGAGAGCGCTCATGCTCAGAGCATATCATCTCCAAGATCAATGAAGTCCTGTTGACGCCATCAGCCACAGAGGAGGAGAAGTGtacTGCCATGCAGTTTGTCATCCAGGCCTATATGAAGCACCTTGGGGTGAAGGTGAAGGAATCTCGGGGGTTTGAGCCCAAACCCAAGCTAATAAACCTTCTCCCTAAGATCAAGAAGACTATAAAACCAGAAAAGGATGGAGGCGTGGAGGAAAAGCTGAAAAAGTCCCGCTTCCAGATAATGCGCAGCCATAACAAGAGGCCCAGCCGAACCGACATCTCCTCAATTACCAAGGCTCTAGAGCAGAATAAGCAGCGGACACAAAAGCAGCTGTCGCAGACCTCTCTAGGGACGACCGatcaggctgaaacaccttcaGCAGGCCGAACACGGAGCAGTCAGTCCAGTGATGGGCCAGACGGCAGCACAGGCTCCATCAACTCCCCTCTTTTCAGCCCTTcccctgcacagagctctgacagCACAGCCAGAGATTTAGAGCCAGGCACTGCTCCCTTGACAGCGTTACCCAGACTTGGAGAGGTTGGTCCTCTGGGTGAAGGACAGGACTCCTCTTCCTCAGGCACGCACTTTGACTTCACCTATCCTCTGGACCATCTCCAAGAGGAGGAGCCTGAAACGGACAGGATGGAGCCGTTGAGCTCAGGAGAGGTGCAGAGTGAGGATGATCAGGCGTTTGAGGTGGAGCCGGAGCAAGACCCTCCTCACTGGCAGACGCTGGTGAGCACAGACGTCCTCGCACTGCTGCCACCGCATGAGATcaagagacaggaagtgatcaATGAGTTGTTCTACACGGAGCGTGCTCACCTGCGCATGCTGAAGGTGCTGGATAACGTGTTCTACCAGAGGATGACCCGAGAGGCCATTCTGCCCCCTGCAGACATCAAAAACATCTTCACCAACCTGGAGGAGATCGTCCAGCTACACGTGTCTATAACAGAGCAAATGACGGCCATTCGGAAGAAGAACGAGACGGCGGTCGTAGACCTCATAGGAGACGATTTGCTGTCCTGGTTCAGTGGAACAGAAGAGGAGAAGATCAAGCGGGCAGTGGGAACCTTCTGCAGTAATCAGCCCTTCGCTCTGGAGCTTATAAAGAGCAGGCAGAAGAAGGATCAGCGATTTGCTGCCTTTGTGCAGGAGGCGGAGAGTAATCGTCAGTGTCGAAGGCTCCAGCTGAAGGACATCATTCCTGTGGAGATGCAGAGACTCACCAAATACCCACTTCTGCTCGAAAACATTGCAAAATACACTGACGACACTGAGGAGAAAAGCAAAGTGAAACGAGCCTGCGAATGCTGCCGTCAGATCCTCAACCACGTCAACCAGGAAGTAAAAGAGGCTGAAAACAAACAGAGGTTAGAGGACTACCAAAGAAGACTGGATCTCTCGTCACTGAAGCAGAGCGAGTACCCCATGATTGCTGAGTTTAAGAACCTCAACTTGACCAAACGGAAAATGGTGCATGAGGGACCATTGTCTTGGAAAGTGAATAAAGACAAGACTATTGAGCTCTACACACTCCTGCTAGAGGACATCTTGGTGCTGCTGCAGAAGCAGGATGAGAAGCTGATCCTGAAGTGCCACAGTAAGAATCTGGCAGGCACGGCCGAGACCAAACATATCTTCAGTCCAATCATCAAGCTCAGCACCGTGCTGGTGCGTTCTGTAGCAACAGACAACAAGTCGTTCTTTGTGGTGTCCATGTCCGATTATGGCGCTCAGATTTATGAGCTGATGGCACAGACCGTGTCTGAGCAGAAAACGTGGCACGATCTCATCGGGCAAAGAGCAGATTGTATGAAGAGCCTGCCTCAGAATGATGGGGAGCGGGAAGCTGATGATGAGATGAACTCTGGAATGccaaaaatgaacaaagatCCGGATCGTATCTCTACTGGGAGCATCCAGTCTCCAGaAAAAGATGCTACTTCCTGCTCAGAGATCATGCAGATTCCTACAGCAGGAAGCAACCCGTTTGACACCAAGTCAGAGGATGAGGGAGAGGCAGAAGGAGAGGGTGAGCACTCACTGCAGGTtcaggatgaagaggaggatgaggagacCTTCCTAGACCCCGAGCTTGCAGAGAGACTTCCGTTCTTGAAGCAGCGCTCGAGGCACGCCATCGCTGTAGAGGAGAAGGACTTGGATACCTTTGACCTGCCTCCACTGATGGCAGACGAGGCGCTTCGAACCTtGGCTGCTCTGAGGCAGCTCCTGATCAATCACATGGATGGTCAAGAGGATGtggacagggacagagagaggggggaggCTGAGTTGAGGGCAGGGTCTCTGCAGGGCTCAGAGGAAAACACTGCCCCTGGTGGCTCAGTGGAGAACGGCGCTGAGAGGACAGAGACCGCACACACCAGGACTGAGAATCGTCACGAGCTGCCCTCAGGAGACACAGGTTTCTTTGAAGGCTCAGAGGACTTTGTAGGCAGTTACATGGTGCTGGAGGGTTACGGTGGTTCAGGTGAGAGCAGCACTGATGACGATGGGCAGGCCTGCAGCACCGAGCCTGCAGCAGCAGGTGACTCGGTCATCGACCTGAAGAAGCTCTTGTCCTCTGCATCCTCTCAGAGCAGAGGACCCAACTTCAGCAGACAGGTCATGACACACTTGCGCCTGCTTCAGGGCAACCTGCAGCAGCTGAAGgatgtaGAATCAAAATATAACCAACTATGCCAAAGGCACTCAGAGCAAGCAGCTACTGAATCAGAAGAAAACAAAGATAAAAGCTAGTGTTTCTGGAGCTGTGGTATCCTGCTGGAAGTAGAAGAGACACAGGAAGGTTGCTGTGGTCCTGCTGCTCCCTGCTCAACTCTTGTGCATCTTAGCTGCAATAACGAAGACCGAGACCCCAAACCAAACCTCACACACGCAGTACAGGAAAACCCAAGTTCTCTGGCTGACTTTCTGAGGAAAGAGCGGGGGAAATTTATGAAGACATTCCATCATCCCTAGTTgcttcagttatttatttgGAATTACCAAGATTTGGATTGAAGCAGCTCTCTACAAAACTCACAGAGTAAAAGAGAACGATGGCAGCATGGCACCAAGGATAATCTAAATCCTGGACTTCATCTCTTCTAGTTTTCACGTGGAATCAACTTATATGTGAAAttgacagtttttaaaaaatgctcgGCTCTGACTGGAAGAAATTGAGTTTGATATCATAACCAATAAAATGATGCCAGATGTAGTTCTATAGGCCTTAGACCTCGACTGCAATCGACTTATGAAATGTCCTTCATAAGGACTAATGCTACATAAAGCCAGATGGATCATTCCTATTCTGTATGGATATGAATGTTATTACTGCCGCACACATCTGCATGAGGGCCTCATGTGGCCTGAAACTACACATCTGACCACTAAACTACAGGAAGAATATGTTACTGATTCTGAGCAAAGCAGCTCGTACTGAAGCTTCAATACACACAATCAGGGTCATCATCAGGATGTTGATTTTCATAAAGCCTATTGTTCAGGTTTCTTTCTGAAATAGCTAAAATATGAGCTTCTCTGGTTTTAAGGGTAAAATGCTGAATCCTTTTAATCTAACATTGATGCGGAGAGAAAAGCTGGAAGAGGCATCGCTCTTTACTGCTGTTACTGTGTGTAGGGGGAAAGCGAGTTGCCTGAAAATCTGAAAAGACGGGATGTTGCTGCTTTCCTGTGTCCTCATCACCAACCTGAAGCCTCTGTCTCATAACTTTAAGCTTTTTTCTCTACCACATTCTGTTGAATGACGCTACTGAAGATCTCTATGGTCCAGTCAGAAGTGACCAAGAGAAAGCAGAACTTTATCACCACAAGGCACTATATTCTTCTATTGTACAAGCCAAACTCGATTGGAAGTCTTACTGGATGGTTATAGCATGGATTTTCCTTTTATCCGGGACATGGGAATGAAGTTGTATGAAGATAGAAATGATTATGAAAGTTACTGCAAGGacttgttataaaaaaaaaaagacccctAAAGGTCTATAAGTGTAAAATTGTACAATTATGACCAACACTGCATCTCTTACAGAGAcctaattcctttttttttctttctgctttctaCATTATATATGAGTCGTGTATTATTTTAACAGAACCTActaaaaaacccaaaaaaggaaaaaaataaatgactacaAGGTATccttaaatattaatgtaatctGTACTTTTTATTTTGGCTAATGTTCATGaggtattatattttattattattgagcaCTATTAATGATCTTTTAGCCTTCTGTGGAAAAAGATATGAATAGCTCTAATAGATTCTATTGCATAAATAAGACTGAACTGTTCAAAATGGAAAGAATTATTGCACACTGtctccgttttttttttttcacccactGCCGAAGAAGGCAATAAGAGTTTCTGGGTTTATTACCAAAAGGACAATATCAGAACCACTTCAGTATGCTGCAGATTTATTCAATAAACTGGAAACACAAATGGTGAA

Function

GO: NA

KEGG:

id description
K07532 ARHGEF12, LARG; Rho guanine nucleotide exchange factor 12

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU458889 lncRNA upstream 146303 14708856 ~ 14716055 (+) True G387160
XR_004577415.1 lncRNA upstream 678307 14152144 ~ 14184051 (+) False LOC117596237
TU458144 lncRNA upstream 686933 14170058 ~ 14175425 (+) True G386495
XR_004577416.1 lncRNA upstream 708216 14152144 ~ 14154142 (+) True LOC117596237
TU458138 lncRNA upstream 731731 14130171 ~ 14130627 (+) True G386490
TU458941 lncRNA downstream 18206 14934704 ~ 14936042 (+) True G387208
TU459148 lncRNA downstream 246886 15163384 ~ 15233645 (+) False c27h11orf88
TU459154 lncRNA downstream 265815 15182313 ~ 15204882 (+) False LOC113531625
TU459156 lncRNA downstream 265815 15182313 ~ 15204587 (+) False LOC113531625
TU459153 lncRNA downstream 286965 15203463 ~ 15204587 (+) True LOC113531625
XM_026921636.2 mRNA upstream 1614 14858557 ~ 14860744 (+) True tlcd5b
XM_034300876.1 mRNA upstream 1614 14858557 ~ 14860744 (+) False tlcd5b
XM_026921630.2 mRNA upstream 6417 14811102 ~ 14855941 (+) False mcama
XM_026921632.2 mRNA upstream 6417 14811104 ~ 14855941 (+) True mcama
XM_026921631.2 mRNA upstream 6417 14811108 ~ 14855941 (+) False mcama
XM_026922535.2 mRNA downstream 180570 15097068 ~ 15138075 (+) True drd2b
XM_026921448.2 mRNA downstream 309847 15226345 ~ 15233692 (+) True c27h11orf88
XM_026921447.2 mRNA downstream 318421 15234919 ~ 15242995 (+) True layna
XM_034300431.1 mRNA downstream 318421 15234919 ~ 15242995 (+) False layna
XM_026922534.2 mRNA downstream 328507 15245005 ~ 15261736 (+) True sik2a
TU457943 other upstream 1034210 13825850 ~ 13828148 (+) True G386325
TU457909 other upstream 1038303 13821788 ~ 13824055 (+) True G386294
XR_003403209.2 other upstream 3551505 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 4482693 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 5094322 9765740 ~ 9768036 (+) True G384178
XR_004577401.1 other downstream 444860 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 1118325 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 1231862 16148360 ~ 16148432 (+) True trnam-cau_49
TU460079 other downstream 1629643 16546141 ~ 16555532 (+) False cdc42ep2
TU460111 other downstream 1739171 16655669 ~ 16657113 (+) True LOC113531241

Expression Profile