RNA id: XM_034300855.1


Basic Information

Item Value
RNA id XM_034300855.1
length 2907
RNA type mRNA
GC content 0.46
exon number 7
gene id fbxw2
representative False

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10102353 ~ 10113155 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

GGGTGGGAAAATAAGGCGTGAGCTCCAAACTTCCTTCCGCTGGTGTTCAGCCCGCTCTGAGCCTGCTAGCGGACTCTTCAGTGCTTATAGATTAGCGGGGTAGCTCATGTAGCGCTGCGGAGTCGGGgGTAGTCGCCCTCATGTGGCCATGGAGAAGGAGGCCTTCGAGGGATGGCTGGAGTCGGTCTCCACCTCCTTCTTGGCACTGAATGACCTGCAGCGCAATCAGCTGCTGGACCACCTGATCTCTCTGAGTGGCGCTGTTCAACTCCGGCACCTTTCCAATGGACTGGAGGCACTGCTGAAGCGTGACTTCCTGCGCCTCCTACCCCTGGAGCTGGCCTTCTACCTGCTGCGCTGGCTTGACCCTCAGACGCTGCTCACTTGCTGCCTGGTGTGCAAGCAGTGGAACAAAGTAGTCAACGCCTGCACCGAAGTGTGGCAAGGTGTGTGCAGAGACCTGGGCTGGCGAATCGATGACTCCATCCAGGATGCTGGCCACTGGAAACGCGTCTACCTTAAGGCCAAGCGTCGCATGAAACAGCTGCAAGAGGAGGACGCATTTGAGACAAGCTCCTTGATTGGGCACAGCGCTCGGGTGTATGCCTTATACTACAAGGATGGCCTCCTCTGCACAGGCTCTGATGACCTGTCAGCCAAGCTGTGGGATGTCCGCACTGGTCAGTGTATCTATGGCATccagacacacacctgtgctaCTGTGAAGTTTGATGAGCAAAAACTAGTGACCGGGTCTTTTGACAACACCATTGCATGCTGGGAGTGGAGTACAGGCGCCAAAATCCAGCAGTTCCGTGGACACACTGGTGCAGtgTTCAGCGTAGACTACAATGATGAGCTGGACACGCTGGTCAGTGGTTCTGCAGACTTTACTGTCAAAGTGTGGGCTCTGTCAGCCGGAGCATGTCTCAACACACTCACCGGGCACACGGAGTGGGTCACTAAGGTACTCCTTCAGAAAAGCCAAGTGGAGTCCATGATGCACAGTCCTGGCGACTACATCTTACTGAGTGCTGATAAATATGTAATCAAGGTGTGGCCTATAGGGCGAGAGATCAACTGTAAGTGCTTAAAGACTCTGTCCGTGTCTGAGGATCgcagtgtgtgtctgcagcCCCGTCTACAGTTCGATGGCCGCTACATTGTCTGCAGCTCGGACCTGGGCGTCTACCAGTGGGACTTTGCCAGCTTTGATGTGCTAAGAATTATCAAACCACAGCAAGACCCAGCTAGTCCCTCCCTTCTCAGCTTTGGTGAGGTGTTCGCTCTACTGTTTGACAACCACCACTTGTATGTAATGGACCTGAGGACTGAAGCCATCACAGGCCGCTGGCCGCTGCCAGCCTACCGCAAATCCAAAAGAggctccagtttccttccaggCATCACCTCATGGCTCAACGGCTTTGACGGCAAGAACGATGCAGGCCTGGTGTTCGCCACCAGCATGCCGGACCATAGCATTCATTTGGTTCTGTGGAAGGAGAACGGCTAAAGAGAGAAATGAGCATGCGCCACCTTTAGTTGACAACAGGGACGctaaacaaaaaagacaaaaatgggTGCTCTTGATTTCAAAAACCTGCAGATTAGACATTGCATGGACCAaagtctgtctttctttatttcttcttttcagtTTCTGCTGTTTGCTTTTAGGTTTAAGAACAAACTGGCTCTTTCTTTTGGTCAAGCAAAAACCATTCTTGCACATTCTGACATGTattttgtgcagtgtgtggatACAATATGGGTAGCAGGTGAAACCTTGAAGAAGGTGCTTGCTGGCTTGAACCTCTTTTTGTTCTGATCGTTTCATAAACGTGAAAGCAACTGTGAATCGAGCACTTAACTGAACAGTAACGTCCTGTTGCAGCACAATCATCCAGattcatgaaaacatgaaattataacataatttgtctgtgtaatgtttaaaaaaaaaaaaaaaaacccaaagtatTTCGTTGATAGATCTAAATTTGTGTTAAGAATACAGGATAAGAAGATTGCCTTAATTTCTTGATTTCCTTTTAAGAAGGAAGAGTTTTGCAGATGGCCACGCCCATGCACTCTGCCATGTCACATGTGTGGTATACACTTTCTTGTGTGATAAACTGCAGACTGTACGGTTTGTTTGTATGACAGCCATTAGGTTTTACTAATATTGACCCTTCAACTTTCACTTGAAATTAGTCATGTGCCTTTTTCCTTTTAACACTTAAATGCCTGCAGGTATGTTGTGAAAGATCTTGAAATTCATTAGTACAATCCTTATTGGAACAAATTCCAGTATGAaaggtatatttattttttacagtttcattatttttaaccCGATATAATCAGCACCACAGTATGTACTCTTACCGTTCTGCAGAGGCTAATTCACTTAACAGTGCTTCATGTGAATCTCAGTGAATGTTcaattttttaaacttcattttTAAAGACTAATCAACTTCACTAGAAggttaacattattttaaacatagtCCTTTAGCGCTACAGGACCCATACATGTACAGAAGAATTCTCACTTTTTTAACTTGCATCGAAGTACATGGACAAACTTTaacctaaaacatttctgtcttttgcTAGCCGTTCTTTAGTCAGGCTTGATAGTTGGTTTCAGTAGTGCTAGTCTTCTTAGAACATCAGGGGAAGCCTTTTGCTTTTAGGGCATTACCAGTGGAACCTGGGCTATAACCTCCACATTGCATGGTTTATCACTTCACTTCTTTAAAATATAGACCTCACTGTAACATTCACTCATGCCACTGTAGACCATAATGCCATCAATTCACAATTAGCAAATTTCCGGTTTGTTGGTTGTATATAATGATATGCTGTcttttgaataaatgaaaatagcTAAGAGAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455519 lncRNA upstream 266583 9835704 ~ 9835912 (+) True G384212
TU455504 lncRNA upstream 288804 9813485 ~ 9813691 (+) True G384197
TU455496 lncRNA upstream 297491 9804582 ~ 9805004 (+) True G384189
TU455490 lncRNA upstream 307636 9794083 ~ 9794859 (+) True G384183
TU455489 lncRNA upstream 310584 9791144 ~ 9791911 (+) True G384182
TU455790 lncRNA downstream 9378 10122533 ~ 10122886 (+) True G384459
TU455792 lncRNA downstream 14616 10127771 ~ 10127971 (+) True G384461
TU455799 lncRNA downstream 16088 10129243 ~ 10129531 (+) True G384466
TU455967 lncRNA downstream 193519 10306674 ~ 10306908 (+) True G384583
TU456005 lncRNA downstream 244504 10357659 ~ 10358263 (+) True G384606
XM_026922103.2 mRNA upstream 7688 10053795 ~ 10094807 (+) True ncs1a
XM_034300715.1 mRNA upstream 9598 10053793 ~ 10092897 (+) False ncs1a
XM_026922347.2 mRNA upstream 59521 10004996 ~ 10042974 (+) True gpr107
XM_026921570.2 mRNA upstream 114867 9980311 ~ 9987628 (+) False ntmt1
XM_026921547.2 mRNA downstream 19123 10132278 ~ 10135643 (+) True gas1b
XM_034300646.1 mRNA downstream 56966 10170121 ~ 10183321 (+) True dab2
XM_034300648.1 mRNA downstream 56967 10170122 ~ 10183321 (+) False dab2
XM_034300649.1 mRNA downstream 56969 10170124 ~ 10183321 (+) False dab2
XM_034300650.1 mRNA downstream 56969 10170124 ~ 10183321 (+) False dab2
TU455483 other upstream 334459 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 730965 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 731358 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 733167 9369261 ~ 9369328 (+) True LOC113531687
XR_003403288.1 other upstream 733592 9368831 ~ 9368903 (+) True LOC113531686
TU455978 other downstream 265058 10378213 ~ 10379665 (+) True G384593
XR_003403209.2 other downstream 1184825 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 3708633 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 3712695 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 5248203 15361358 ~ 15367247 (+) True fkbp6

Expression Profile