RNA id: XR_003403244.2


Basic Information

Item Value
RNA id XR_003403244.2
length 958
lncRNA type inter_gene
GC content 0.44
exon number 4
gene id LOC113531306
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 10482134 ~ 10490299 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

agccgggtgcgtcacttacctgagGATGAGATGGCACCAAGATGCAAAGCTGAGGATTTAAGAGTGAAAACTCCTGGTTTCTCATGCTGCAGCTGAGCTCACTTTATGTAATTGGGGAATTTATATGGAGGCCAATAGTGGGCATCCTTTCCAGCCATCCACATAGTGCTTACCACTTCCACCTCTCCCTGTCCCAAGAAATCCACGACATAGGAAAAGGGTGAGGTCCAACATAGTACAACTGAAAAACTGAATCACTGGCCCAGGAAGTTTTCAAAAGGAAATGCAGACACATGATCTAATGGACCAAACCTTCTCCAGATGACACAGACAGTGAACATTGTACAACATCTCCTCAACCCCATACAAGGTCCTGAACTGTTCAAGGAAGTACCAAATCAGATTATCTGTATAATTGCAGTAATGGGCACACAGGGTAGGAGAAAGCATCAAATAGATGCTGATAGACAGTGTAAGGAAGTTAACATAAAGTGGAGTTGGGAGGACTCCTTTCAGTACCACTGGACCAGTGTACAGAAGAAATCGCCTAAACTTGGTAGCTTTCCAGGGGTATAATTCTGAGACAGATCTCGGCCTTCGTGCTGAGGTAAGTACTGTGACATCCCTAAACGTTTTTCTAAGATGGAACTGATCTTAAGGGAGCCCAGTCTGTATTTGTATGATCCAAAATGTGAACAGCTACCTTGTAACACCAAGGCAAACAACATGCATATAGTCTAGCGCAAATTGTGTGACCACAAATGGATCCCTTTCAAAAGGGAATTTACCCAAAATTGGTCAAGGTTGCTTTAGAGAACTTTTGAACAATGGCAGTCCATCTGTGTTCACCTCCAATGTGACTGTATCAGTTTGTGACAGCAGTCCCCCTTTGTTTTGGAGCAAATGTTCCAGTATGCCAAAATGGACATACTCCCCACCATCAATTGCTTTGACCTCA

Function

GO: NA

KEGG:

id description
ko03013 Nucleocytoplasmic transport
ko03030 DNA replication
ko03420 Nucleotide excision repair
ko03430 Mismatch repair

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455977 lncRNA upstream 93863 10380570 ~ 10388271 (+) True G384592
TU456007 lncRNA upstream 120644 10361255 ~ 10361490 (+) True G384608
TU456006 lncRNA upstream 123636 10358270 ~ 10358498 (+) True G384607
TU456005 lncRNA upstream 123871 10357659 ~ 10358263 (+) True G384606
TU455967 lncRNA upstream 175226 10306674 ~ 10306908 (+) True G384583
TU456108 lncRNA downstream 69706 10560005 ~ 10560651 (+) True G384700
TU456113 lncRNA downstream 76005 10566304 ~ 10566511 (+) True G384705
TU456133 lncRNA downstream 101977 10592276 ~ 10592482 (+) True G384725
TU456136 lncRNA downstream 104151 10594450 ~ 10594665 (+) True G384728
TU456148 lncRNA downstream 118653 10608952 ~ 10609617 (+) True G384740
XM_034300544.1 mRNA upstream 103996 10367262 ~ 10378138 (+) False arpc5lb
XM_034300546.1 mRNA upstream 103996 10370497 ~ 10378138 (+) False arpc5lb
XM_034300545.1 mRNA upstream 105665 10367257 ~ 10376469 (+) True arpc5lb
XM_026922385.2 mRNA upstream 140630 10320064 ~ 10341504 (+) True cabp7b
XM_026922013.2 mRNA upstream 197583 10272650 ~ 10284551 (+) True taok3b
XM_026921623.2 mRNA downstream 295258 10785557 ~ 10825976 (+) True ppp1cc
XM_034300946.1 mRNA downstream 535569 11025868 ~ 11096141 (+) False fer
XM_026922376.2 mRNA downstream 535570 11025869 ~ 11096141 (+) False fer
XM_026922377.2 mRNA downstream 536858 11027157 ~ 11096141 (+) True fer
XM_034300944.1 mRNA downstream 536970 11027269 ~ 11096141 (+) False fer
TU455978 other upstream 102469 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 714098 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 1110604 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 1110997 9371060 ~ 9371137 (+) True LOC113531672
XR_003403289.1 other upstream 1112806 9369261 ~ 9369328 (+) True LOC113531687
XR_003403209.2 other downstream 807681 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 3331489 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 3335551 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 4871059 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 5544524 16034823 ~ 16038605 (+) True LOC113531248

Expression Profile