RNA id: XR_003403274.1


Basic Information

Item Value
RNA id XR_003403274.1
length 78
RNA type ncRNA
GC content 0.40
exon number 1
gene id LOC113531672
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 9371060 ~ 9371137 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

CTGCAATGATGTCTTGAATTTCTTCACCTGAATGCACTGTGAAGATCAAAATAGACGAGCTTTTTAACCCTGAGCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU455193 lncRNA upstream 28415 9342428 ~ 9342645 (+) True G383965
TU455189 lncRNA upstream 31914 9338933 ~ 9339146 (+) True G383961
TU455186 lncRNA upstream 33154 9337026 ~ 9337906 (+) True G383960
TU455188 lncRNA upstream 33610 9336910 ~ 9337450 (+) False G383960
TU455199 lncRNA downstream 1029 9372166 ~ 9454589 (+) True G383971
XR_004577435.1 lncRNA downstream 82908 9454045 ~ 9456252 (+) True LOC117596253
TU455393 lncRNA downstream 115325 9486462 ~ 9486667 (+) True G384106
TU455412 lncRNA downstream 155174 9526311 ~ 9526518 (+) True G384125
TU455422 lncRNA downstream 189998 9561135 ~ 9561374 (+) True G384134
XM_026922279.2 mRNA upstream 12172 9351540 ~ 9358888 (+) True c27h9orf78
XM_034300896.1 mRNA upstream 87282 9255884 ~ 9283778 (+) False tlcd3a
XM_026922516.2 mRNA upstream 87282 9261530 ~ 9283778 (+) True tlcd3a
XM_026921944.2 mRNA upstream 138418 9186660 ~ 9232642 (+) True usp2b
XM_034300797.1 mRNA downstream 9449 9380586 ~ 9387508 (+) True surf6
XM_026922284.2 mRNA downstream 9449 9380586 ~ 9387508 (+) False surf6
XM_034300799.1 mRNA downstream 9449 9380586 ~ 9387508 (+) False surf6
XM_026922478.2 mRNA downstream 18305 9389442 ~ 9397886 (+) True LOC113531633
XM_026922477.2 mRNA downstream 18305 9389442 ~ 9397886 (+) False LOC113531633
XR_003403289.1 other upstream 1732 9369261 ~ 9369328 (+) True LOC113531687
XR_003403288.1 other upstream 2157 9368831 ~ 9368903 (+) True LOC113531686
XR_003403287.2 other upstream 2496 9368489 ~ 9368564 (+) True LOC113531685
TU454806 other upstream 595926 8764902 ~ 8775134 (+) True G383625
TU454617 other upstream 779905 8590367 ~ 8591155 (+) False gig2o
XR_003403285.1 other downstream 322 9371459 ~ 9371530 (+) True LOC113531683
TU455483 other downstream 394603 9765740 ~ 9768036 (+) True G384178
TU455978 other downstream 1007076 10378213 ~ 10379665 (+) True G384593
XR_003403209.2 other downstream 1926843 11297980 ~ 11310853 (+) False ajm1
TU457909 other downstream 4450651 13821788 ~ 13824055 (+) True G386294