RNA id: XR_004577380.1


Basic Information

Item Value
RNA id XR_004577380.1
length 519
lncRNA type sense_over
GC content 0.40
exon number 3
gene id LOC117596213
representative True

Chromosome Information

Item Value
chromosome id NC_047621.1
NCBI id CM018567.1
chromosome length 18889892
location 12626492 ~ 12627278 (+)
genome version GENO_Phyp_1.0_2019_striped_catfish_Genome
species striped catfish
(Pangasianodon hypophthalmus)

Sequence

tgtgtttttgtggaTAGAGTCTTTGTGTTTGACCTTGCCTTACCTTGTTTTTGCCTTTTGACTTTCTAGCAAAAGTCATACAAACTAACAAATTTGTCACAGCAAATTcaacagatcctttctttccATTATAGAGCATGAAAACACCATTTTCAAACTTGGCCAGCCCTGAAGAGTGTTTTCAAAAAACTTGTGTTTTTGGCAGTGGaaaacccattttttttttaagtatggGAGGAGAAACAAAATGGAGAcaatgtacacattttaaatgtattctgGACAAGGCCATGTTATGTGTAAAACAGCATTAATGCACCATTGCGTCAGGGCAGTTTGAAGAACACCGAAACATGAGAGACAGTTTAGGGCAGGACATGTTAATGTGGAGCAAGATGGCAGAGAAATGAATTGTGGATGTCTAGAGAGGCATATCGCTGTTTCCTGTTGTGAATCGTTATATCCAACGTGTTTTGCCTTGAGGCCTGTTGCACGAAGCCGGTTTCGGTGGCTATCCAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU457132 lncRNA upstream 78376 12547837 ~ 12548116 (+) True G385594
TU457126 lncRNA upstream 156328 12469723 ~ 12470164 (+) True G385588
XR_004577433.1 lncRNA upstream 223073 12360613 ~ 12403419 (+) True LOC117596248
TU456953 lncRNA upstream 303691 12280589 ~ 12322801 (+) True G385429
XR_004577441.1 lncRNA upstream 436024 12182459 ~ 12190468 (+) True LOC117596260
TU457162 lncRNA downstream 91407 12718685 ~ 12719442 (+) True G385624
TU457237 lncRNA downstream 163653 12790931 ~ 12800917 (+) False zgc:63972
TU457239 lncRNA downstream 174081 12801359 ~ 12802002 (+) True G385698
TU457238 lncRNA downstream 177750 12805028 ~ 12805853 (+) True G385697
TU457236 lncRNA downstream 180045 12807323 ~ 12809012 (+) True G385695
XM_026921842.2 mRNA upstream 340368 12269176 ~ 12286124 (+) True hexb
XM_034300578.1 mRNA upstream 340368 12269177 ~ 12286124 (+) False hexb
XM_026921619.2 mRNA upstream 362408 12253990 ~ 12264084 (+) False LOC113531115
XM_034300429.1 mRNA downstream 163623 12790901 ~ 12800735 (+) True zgc:63972
XM_026922499.2 mRNA downstream 163623 12790901 ~ 12800735 (+) False zgc:63972
XM_034300956.1 mRNA downstream 368980 12996258 ~ 13020139 (+) True ttll11
XM_026921946.2 mRNA downstream 574526 13201804 ~ 13272662 (+) True specc1
XM_026922454.2 mRNA downstream 646607 13273885 ~ 13285031 (+) True adora2b
XR_003403209.2 other upstream 1315639 11297980 ~ 11310853 (+) False ajm1
TU455978 other upstream 2246827 10378213 ~ 10379665 (+) True G384593
TU455483 other upstream 2858456 9765740 ~ 9768036 (+) True G384178
XR_003403285.1 other upstream 3254962 9371459 ~ 9371530 (+) True LOC113531683
XR_003403274.1 other upstream 3255355 9371060 ~ 9371137 (+) True LOC113531672
TU457909 other downstream 1194510 13821788 ~ 13824055 (+) True G386294
TU457943 other downstream 1198572 13825850 ~ 13828148 (+) True G386325
XR_004577401.1 other downstream 2734080 15361358 ~ 15367247 (+) True fkbp6
TU459555 other downstream 3407545 16034823 ~ 16038605 (+) True LOC113531248
trnam-cau_49 other downstream 3521082 16148360 ~ 16148432 (+) True trnam-cau_49

Expression Profile